The DOI matches its Crossref record; 63 of the 63 references it cites were found in a registry or an index.
Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses
Open accessAbstract
Richard O'Connell and colleagues report the genomes and transcriptomes of two Colletotrichum plant fungal pathogens. C. higginsianum infects Arabidopsis thaliana, and C. graminicola infects maize (Zea mays); comparative genomics in both species lead to molecular insights into the transition from biotrophic to necrotrophic life stages. Colletotrichum species are fungal pathogens that devastate crop plants worldwide. Host infection involves the differentiation of specialized cell types that are associated with penetration, growth inside living host cells (biotrophy) and tissue destruction (necrotrophy). We report here genome and transcriptome analyses of Colletotrichum higginsianum infecting Arabidopsis thaliana and Colletotrichum graminicola infecting maize. Comparative genomics showed that both fungi have large sets of pathogenicity-related genes, but families of genes encoding secreted effectors, pectin-degrading enzymes, secondary metabolism enzymes, transporters and peptidases are expanded in C. higginsianum. Genome-wide expression profiling revealed that these genes are transcribed in successive waves that are linked to pathogenic transitions: effectors and secondary metabolism enzymes are induced before penetration and during biotrophy, whereas most hydrolases and transporters are upregulated later, at the switch to necrotrophy. Our findings show that preinvasion perception of plant-derived signals substantially reprograms fungal gene expression and indicate previously unknown functions for particular fungal cell types.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The source backs part of the claim, not all of it — or backs it for a different population, condition or comparison.
In the citing paper
“Colletotrichum species adopt either intracellular hemibiotrophy or subcuticular, intramural necrotrophy (Wharton & Diéguez-Uribeondo 2004, Münch et al. 2008, O'Connell et al. 2012, de Silva et al. 2017).”
From Colletotrichum: lifestyles, biology, morpho-species, species complexes and accepted species (2021) · cites this paper as O'Connell et al. 2012
Experimental — accuracy not yet measuredThe cited source says what the claim attributes to it.
In the citing paper
“Comparative analyses of these genomes have revealed that Colletotrichum species may tailor their plant cell wall degrading enzymes and proteinases according to their lifestyle (O'Connell et al. 2012, Baroncelli et al. 2016, Hacquard et al. 2016).”
From Colletotrichum: lifestyles, biology, morpho-species, species complexes and accepted species (2021) · cites this paper as O'Connell et al. 2012
The cited source says what the claim attributes to it.
In the citing paper
“Species of Colletotrichum undergo major transformations in cell morphology and infection mode when switching lifestyles (O'Connell et al. 2012).”
From Colletotrichum: lifestyles, biology, morpho-species, species complexes and accepted species (2021) · cites this paper as O'Connell et al. 2012
The cited source says what the claim attributes to it.
In the citing paper
“Being a complex genus, Colletotrichum has different lifestyles that vary between groups of species, many of which can switch between lifestyles (Promputtha et al. 2007, O'Connell et al. 2012).”
From Colletotrichum: lifestyles, biology, morpho-species, species complexes and accepted species (2021) · cites this paper as O'Connell et al. 2012
The cited source says what the claim attributes to it.
In the citing paper
“Most of the species of Colletotrichum develop a necrotrophic stage in their life cycles (Cannon et al. 2012, O'Connell et al. 2012, de Silva et al. 2017).”
From Colletotrichum: lifestyles, biology, morpho-species, species complexes and accepted species (2021) · cites this paper as O'Connell et al. 2012
The check wasn’t confident either way, so it gives no verdict — never disputed.
In the citing paper
“O'Connell et al. (2012) showed that the destructivum species complex is monophyletic and distinct from other Colletotrichum species complexes.”
From Colletotrichum: lifestyles, biology, morpho-species, species complexes and accepted species (2021) · cites this paper as O'Connell et al. 2012
Experimental — accuracy not yet measured
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Robinson, M. D., McCarthy, D. J., & Smyth, G. K. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btp616 · Cited by 41,364
MrBayes 3: Bayesian phylogenetic inference under mixed models
Ronquist, F., & Huelsenbeck, J. P. (2003) · Bioinformatics · doi:10.1093/bioinformatics/btg180 · Cited by 29,194
BEDTools: a flexible suite of utilities for comparing genomic features
Quinlan, A. R., & Hall, I. M. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btq033 · Cited by 27,437
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.
Langmead, B., Trapnell, C., Pop, M., & Salzberg, S. L. (2009) · Genome Biology · doi:10.1186/gb-2009-10-3-r25 · Cited by 21,849
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
Katoh, K. (2002) · Nucleic Acids Research · doi:10.1093/nar/gkf436 · Cited by 17,027
TopHat: discovering splice junctions with RNA-Seq
Trapnell, C., Pachter, L. S., & Salzberg, S. L. (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp120 · Cited by 11,682
The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics
Cantarel, B. L., Coutinho, P. M., Rancurel, C., Bernard, T., Lombard, V., & Henrissat, B. (2008) · Nucleic Acids Research · doi:10.1093/nar/gkn663 · Cited by 6,108
Self-citationVersatile and open software for comparing large genomes
Kurtz, S., Phillippy, A., Delcher, A. L., Smoot, M., Shumway, M., Antonescu, C., & Salzberg, S. L. (2004) · Genome Biology · doi:10.1186/gb-2004-5-2-r12 · Cited by 5,254
Shaner, N. C., Campbell, R. E., Steinbach, P. A., Giepmans, B. N. G., Palmer, A. E., & Tsien, R. Y. (2004) · Nature Biotechnology · doi:10.1038/nbt1037 · Cited by 4,619
WoLF PSORT: protein localization predictor
Horton, P., Park, K., Obayashi, T., Fujita, N., Harada, H., Adams-Collier, C. J., & Nakai, K. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm259 · Cited by 4,154
Flagged first, then by citations
Research works printed but not linked: 1
- Frank, B. Ueber einige neue und weniger bekannte Pflanzenkrankheiten. Ber. Deutsch. Bot. Gesell. 1, 29–34 (1883).
Cited by
Sorted by citations
Items 501–600 of 1,000
Sharma, R., Xia, X., Riess, K., Bauer, R., & Thines, M. (2015) · Genome Biology and Evolution · doi:10.1093/gbe/evv162 · Cited by 16
Zhang, R., Isozumi, N., Mori, M., Okuta, R., Singkaravanit‐Ogawa, S., Imamura, T., Kurita, J.-I., Gan, P., Shirasu, K., Ohki, S., et al. (2021) · Journal of Biological Chemistry · doi:10.1016/j.jbc.2021.101370 · Cited by 16
Self-citationSong, Z., Pang, Q., Lu, S., Yu, L., Pervaiz, T., Fu, W., Jia, H., & Fang, J. (2022) · Scientia Horticulturae · doi:10.1016/j.scienta.2022.110901 · Cited by 16
Mitochondrial prohibitin complex regulates fungal virulence via ATG24-assisted mitophagy
Yan, Y., Tang, J., Yuan, Q., Liu, C., Chen, X., Liu, H., Huang, J., Bao, C., Hsiang, T., & Zheng, L. (2022) · Communications Biology · doi:10.1038/s42003-022-03666-5 · Cited by 16
Meijueiro, M. L., Santoyo, F., Ramı́rez, L., & Pisabarro, A. G. (2014) · Briefings in Functional Genomics · doi:10.1093/bfgp/elu033 · Cited by 16
Diversity of Pathogenic Fungi in Agricultural Crops
MAHADEVAKUMAR, S., & Sridhar, K. R. (2021) · Rhizosphere biology · doi:10.1007/978-981-16-3364-5_6 · Cited by 15
Genomic analysis of Colletotrichum camelliae responsible for tea brown blight disease
Kong, L., Chen, J., Dong, K., Shafik, K., & Xu, W. (2023) · BMC Genomics · doi:10.1186/s12864-023-09598-6 · Cited by 15
Huang, Z., Zhou, Y., Li, H., Bao, Y., Duan, Z., Wang, C., Powell, C. A., Wang, K., Hu, Q., Chen, B., et al. (2023) · Microbiology Spectrum · doi:10.1128/spectrum.01452-23 · Cited by 15
Self-citationHyaloperonospora arabidopsidis: A Model Pathogen of Arabidopsis
McDowell, J. M. (2014) · Springer eBooks · doi:10.1007/978-3-662-44056-8_10 · Cited by 15
Mansfıeld, J. W., Brown, I. R., & Rupar, M. (2019) · Plant Pathology · doi:10.1111/ppa.13014 · Cited by 15
Yan, Y., Tang, J., Yuan, Q., Gu, Q., Liu, H., Huang, J., Hsiang, T., & Zheng, L. (2020) · Frontiers in Microbiology · doi:10.3389/fmicb.2020.00763 · Cited by 15
Nagel, J. H., Wingfield, M. J., & Slippers, B. (2021) · Fungal Biology Reviews · doi:10.1016/j.fbr.2021.09.002 · Cited by 15
Prasanth, C. N., Viswanathan, R., Malathi, P., & Sundar, A. R. (2022) · 3 Biotech · doi:10.1007/s13205-022-03113-6 · Cited by 15
Schlößer, R., Bien, S., Langer, G. J., & Langer, E. J. (2023) · Mycological Progress · doi:10.1007/s11557-022-01861-6 · Cited by 15
Ma, W., Yang, J., Ding, J., Duan, C., Zhao, W., Peng, Y., & Bhadauria, V. (2023) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2023.125462 · Cited by 15
Extracellular peptidases as possible markers of fungal ecology
Semenova, T. A., Dunaevsky, Y. E., Beljakova, G. A., Борисов, Б. А., Shamraichuk, I. L., & Belozersky, M. A. (2017) · Applied Soil Ecology · doi:10.1016/j.apsoil.2017.01.002 · Cited by 15
Identification of Colletotrichum isolates from Capsicum chinense in Amazon
de Oliveira, C. V. S., Matos, K. D. S., de Albuquerque, D. M. C., Hanada, R. E., & da Silva, G. F. (2017) · Genetics and Molecular Research · doi:10.4238/gmr16029601 · Cited by 15
He, C., Duan, K., Zhang, L., Zhang, L., Song, L., Yang, J., Zou, X., Wang, Y., & Gao, Q. (2018) · Phytopathology · doi:10.1094/phyto-02-18-0043-r · Cited by 15
Resistance-Gene-Mediated Defense Responses against Biotic Stresses in the Crop Model Plant Tomato
Chaudhary, R., & Hs, A. (2017) · Journal of Plant Pathology & Microbiology · doi:10.4172/2157-7471.1000404 · Cited by 15
Biotrophic Fungi (Powdery Mildews, Rusts, and Smuts)
Duplessis, S., Spanu, P. D., & Schirawski, J. (2013) · Wiley eBooks · doi:10.1002/9781118735893.ch7 · Cited by 15
Wang, M., Ji, Z., Yan, H., Xu, J., Zhao, X., & Zhou, Z. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms23126379 · Cited by 14
Yamada, K., Yamamoto, T., Uwasa, K., Osakabe, K., & Takano, Y. (2021) · Fungal Genetics and Biology · doi:10.1016/j.fgb.2023.103777 · Cited by 14
Self-citationHan, C., Su, Z., Zhao, Y., Li, C., Guo, B., Wang, Q., Liu, F., & Zhang, S. (2024) · Phytopathology Research · doi:10.1186/s42483-023-00220-x · Cited by 14
Denton‐Giles, M., Bradshaw, R. E., & Dijkwel, P. P. (2013) · Phytopathology · doi:10.1094/phyto-11-12-0289-r · Cited by 14
An, B., Wang, W., Guo, Y., Wang, Q., Luo, H., & He, C. (2018) · International Journal of Molecular Sciences · doi:10.3390/ijms19071860 · Cited by 14
Eisermann, I., Weihmann, F., Krijger, J., Kröling, C., Hause, G., Menzel, M., Pienkny, S., Kiesow, A., Deising, H. B., & Wirsel, S. G. R. (2019) · Environmental Microbiology · doi:10.1111/1462-2920.14819 · Cited by 14
The Many Questions about Mini Chromosomes in Colletotrichum spp.
Plaumann, P.-L., & Koch, C. (2020) · Plants · doi:10.3390/plants9050641 · Cited by 14
Self-citationAchari, S. R., Edwards, J., Mann, R. C., Kaur, J. K., Sawbridge, T., & Summerell, B. A. (2021) · BMC Genomics · doi:10.1186/s12864-021-08033-y · Cited by 14
Ata, J. P., Caballero, J. R. I., Abdo, Z., Mondo, S. J., & Stewart, J. E. (2022) · Scientific Reports · doi:10.1038/s41598-022-11907-0 · Cited by 14
Gui, S., Martínez-Rivas, F. J., Wen, W., Meng, M., Yan, J., Usadel, B., & Fernie, A. R. (2022) · The Plant Journal · doi:10.1111/tpj.16070 · Cited by 14
Ohtsu, M., Jennings, J., Johnston, M. G., Breakspear, A., Liu, X., Stark, K., Morris, R. J., de Keijzer, J., & Faulkner, C. R. (2023) · Molecular Plant-Microbe Interactions · doi:10.1094/mpmi-05-23-0052-ta · Cited by 14
Gene Family Expansion during the Adaptation of Colletotrichum gloeosporioides to Woody Plants
Meng, F., & Tian, C. (2023) · Journal of Fungi · doi:10.3390/jof9121185 · Cited by 14
Lange, M., Weihmann, F., Schliebner, I., Horbach, R., Deising, H. B., Wirsel, S. G. R., & Peiter, E. (2016) · PLoS ONE · doi:10.1371/journal.pone.0158561 · Cited by 14
Kumakura, N., Ueno, A. M., & Shirasu, K. (2018) · Molecular Plant Pathology · doi:10.1111/mpp.12766 · Cited by 14
Self-citationChen, K., Liao, H., Bellenger, J., & Lutzoni, F. M. (2019) · Environmental Microbiology · doi:10.1111/1462-2920.14605 · Cited by 14
Baba, V. Y., Powell, A. F., Ivamoto, S. T., Pereira, L. F. P., Vanzela, A. L. L., Giacomin, R. M., Strickler, S. R., Mueller, L. A., Rodrigues, R., & Gonçalves, L. S. A. (2020) · Scientific Reports · doi:10.1038/s41598-020-68949-5 · Cited by 14
Mukherjee, S., Mathu Malar, C., Panda, A., Khowala, S., & Tripathy, S. (2016) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.00596 · Cited by 14
The dark side of avocados: a review of anthracnose and stem-end rot in postharvest fruit
Bernal, V. V., Boeckman, N. J., Aćimović, S. G., & Khodadadi, F. (2025) · Frontiers in Microbiology · doi:10.3389/fmicb.2025.1644061 · Cited by 15
Ziv, C., Kumar, D., Sela, N., Itkin, M., Malitsky, S., Schaffer, A. A., & Prusky, D. (2020) · Environmental Microbiology · doi:10.1111/1462-2920.15031 · Cited by 13
Self-citationMolecular basis of cycloheximide resistance in the Ophiostomatales revealed
Wingfield, B. D., Wingfield, M. J., & Duong, T. A. (2022) · Current Genetics · doi:10.1007/s00294-022-01235-1 · Cited by 13
Optical mapping and nanocoding approaches to whole-genome analysis
Gupta, A. K., Kounovsky‐Shafer, K. L., Ravindran, P., & Schwartz, D. C. (2016) · Microfluidics and Nanofluidics · doi:10.1007/s10404-015-1685-y · Cited by 13
Self-citationAmby, D. B., Manczak, T., Petersen, M. A., Sundelin, T., Weitzel, C., Grajewski, M., Simonsen, H. T., & Jensen, B. (2016) · Microbiology · doi:10.1099/mic.0.000361 · Cited by 14
Meyer, M., Bourras, S., Gervais, J., Labadie, K., Cruaud, C., Balesdent, M., & Rouxel, T. (2016) · Fungal Genetics and Biology · doi:10.1016/j.fgb.2016.12.008 · Cited by 13
Seo, H.-H., Park, A. R., Lee, H.-H., Park, S., Han, Y., Hoang, Q. T. N., Choi, G. J., Kim, J., Kim, Y. S., & Kim, J. (2017) · Molecular Plant-Microbe Interactions · doi:10.1094/mpmi-11-17-0266-r · Cited by 13
Zhu, W., Xu, X., Peng, F., Yan, D., Zhang, S., Xu, R., Wu, J., Li, X., Wei, W., & Chen, W. (2019) · Plant Science · doi:10.1016/j.plantsci.2019.02.012 · Cited by 13
Zhang, W., Liu, D., Yu, Z., Hou, B., Fan, Y., Li, Z., Shang, S., Qiao, Y., Fu, J., Niu, J., et al. (2019) · Biological Control · doi:10.1016/j.biocontrol.2019.104159 · Cited by 13
Zhao, J. Z., Duan, W., Xu, Y., Zhang, C., Wang, L., Wang, J., Tian, S., Pei, G., Zhan, G., Zhuang, H., et al. (2020) · Molecular Plant-Microbe Interactions · doi:10.1094/mpmi-08-20-0244-r · Cited by 13
Genome Sequence Resource for Colletotrichum viniferum, the Cause of Grapevine Ripe Rot in China
Dou, M., Hao, Y., Yang, J., Yuan, X., Yin, X., Jiao, Y., Zhao, J., Chen, T., Wang, Y., & Xu, Y. F. (2021) · Molecular Plant-Microbe Interactions · doi:10.1094/mpmi-04-21-0077-a · Cited by 13
Fu, M., Bai, Q., Zhang, H., Guo, Y., YuHong, P., Zhang, P., Shen, L., Hóng, N., Xú, W., & Wang, G. (2022) · Frontiers in Plant Science · doi:10.3389/fpls.2022.761133 · Cited by 13
Duo, H., Yu, H., Sun, E., Zhao, D., & Zuo, C.-W. (2022) · Scientia Horticulturae · doi:10.1016/j.scienta.2022.111422 · Cited by 13
Zhu, J., Zhong, S., Guan, J., Chen, W., Yang, H., Yang, H. F., Chen, C., Tan, F., Ren, T., Li, Z., et al. (2022) · Genes · doi:10.3390/genes13091540 · Cited by 13
Investigating plant–microbe interactions within the root
Utami, Y. D., Nguyen, T. A. N., & Hiruma, K. (2022) · Archives of Microbiology · doi:10.1007/s00203-022-03257-2 · Cited by 13
Liu, X., Ren, X., Tang, S., Zhang, Z., Huang, Y., Sun, Y., Gao, Z., & Ma, Z. (2023) · Agronomy · doi:10.3390/agronomy13082066 · Cited by 13
Fungal Genomics for Energy and Environment
Grigoriev, I. V. (2013) · Soil biology · doi:10.1007/978-3-642-39339-6_2 · Cited by 13
Verticillium alfalfae and V . dahliae, Agents of Verticillium Wilt Diseases
Inderbitzin, P., Thomma, B. P. H. J., Klosterman, S. J., & Subbarao, K. V. (2014) · Springer eBooks · doi:10.1007/978-3-662-44056-8_4 · Cited by 15
Dussart, F., Douglas, R., Sjökvist, E., Hoebe, P. N., Spoel, S. H., & MCGRANN, G. R. D. (2018) · Molecular Plant-Microbe Interactions · doi:10.1094/mpmi-12-17-0299-r · Cited by 13
Liu, B., Wang, H., Ma, Z., Gai, X., Sun, Y., He, S., Liu, X., Wang, Y., Xuan, Y., & Gao, Z. (2018) · PeerJ · doi:10.7717/peerj.5103 · Cited by 13
Phượng, L. T., Fitrianti, A. N., Mai, T. L., Matsui, H., Noutoshi, Y., Yamamoto, M., Ichinose, Y., Shiraishi, T., & Toyoda, K. (2019) · Journal of General Plant Pathology · doi:10.1007/s10327-019-00899-x · Cited by 13
Lu, Y., Sun, J., Gao, Y., Liu, K., Yuan, M., Gao, W., Wang, F., Fu, D., Chen, N., Xiao, S., et al. (2020) · Environmental Microbiology · doi:10.1111/1462-2920.15101 · Cited by 13
Li, Y., Dai, J., Dong, Z., Luo, X., Shao, W., Cui, Y., Xu, X., Yang, T., Ma, X., Kong, L., et al. (2026) · Nature Plants · doi:10.1038/s41477-025-02181-9 · Cited by 12
First genome-scale insights into the virulence of the snow mold causal fungus Microdochium nivale
Tsers, I., Marenina, E., Meshcherov, A., Petrova, O. E., Gogoleva, O. A., Tkachenko, A. A., Gogoleva, N. E., Gogolev, Y. V., Potapenko, E. V., Muraeva, O., et al. (2023) · IMA Fungus · doi:10.1186/s43008-022-00107-0 · Cited by 12
Zhou, S., Liu, S., Guo, C., Wei, H., He, Z., Liu, Z., & Li, X. (2024) · Journal of Fungi · doi:10.3390/jof10070495 · Cited by 12
Self-citationDual-RNA-sequencing to elucidate the interactions between sorghum and Colletotrichum sublineola
Vela, S., Wolf, E. S. A., Rollins, J. A., Cuevas, H. E., & Vermerris, W. (2024) · Frontiers in Fungal Biology · doi:10.3389/ffunb.2024.1437344 · Cited by 12
Self-citationBoeckman, N. J., Borba, M. C., Bernal, V. V., Khodadadi, F., Jurick, W. M., & Aćimović, S. G. (2025) · Molecular Plant Pathology · doi:10.1111/mpp.70050 · Cited by 12
He, F., Zhang, X., Li, B., Safdar, A., Ai, G., Kange, A. M., Zhao, Y., Cao, H., Dou, D., & Liu, F. (2018) · Microbial Pathogenesis · doi:10.1016/j.micpath.2018.08.013 · Cited by 13
Real-time PCR assay for Colletotrichum acutatum sensu stricto quantification in olive fruit samples
Azevedo‐Nogueira, F., Gomes, S., Lino, A., Carvalho, T., & Martins‐Lopes, P. (2020) · Food Chemistry · doi:10.1016/j.foodchem.2020.127858 · Cited by 13
Yuan, Q., Yan, Y., Sohail, M. A., Liu, H., Huang, J., Hsiang, T., & Zheng, L. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms22115963 · Cited by 12
Mangwende, E., Truter, M., Aveling, T. A. S., & Chirwa, P. W. (2021) · Australasian Plant Pathology · doi:10.1007/s13313-021-00807-y · Cited by 12
O’Keeffe, K. R., Simha, A., & Mitchell, C. E. (2021) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2021.1313 · Cited by 12
New species of Colletotrichum from wild Poaceae and Cyperaceae plants in Iran
Alizadeh, A., Javan-Nikkhah, M., Nazarian, R. N., Liu, F., Zare, R., Fotouhifar, K., Stukenbrock, E. H., & Damm, U. (2022) · Mycologia · doi:10.1080/00275514.2021.2008765 · Cited by 12
Self-citationColletotrichum species associated with sugarcane red rot in Brazil
Marins, É. F. C., da Silva, M. J. D. S., da Silva, J. L., Silva-Cabral, J. R. A., Costa, J. F. D. O., Feijó, F. M., Assunção, I. P., & Lima, G. S. D. A. (2022) · Fungal Biology · doi:10.1016/j.funbio.2022.02.002 · Cited by 12
Cao, L., Sun, X., Dong, W., Ma, L., & Li, H. (2022) · Plant Disease · doi:10.1094/pdis-04-22-0901-re · Cited by 12
Self-citationGenomic resources of Colletotrichum fungi: development and application
Tsushima, A., & Shirasu, K. (2022) · Journal of General Plant Pathology · doi:10.1007/s10327-022-01097-y · Cited by 12
Self-citationShi, M., Xue, S., Zhang, M., Li, S.-P., Huang, B., Huang, Q., Liu, Q.-B., Liao, X.-L., & Li, Y. (2022) · Pathogens · doi:10.3390/pathogens11121463 · Cited by 12
Hypothetical Protein VDAG_07742 Is Required for Verticillium dahliae Pathogenicity in Potato
Wang, D., Wen, S., Zhao, Z., Long, Y., & Fan, R. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms24043630 · Cited by 12
Elucidating the Obligate Nature and Biological Capacity of an Invasive Fungal Corn Pathogen
MacCready, J. S., Roggenkamp, E. M., Gdanetz, K., & Chilvers, M. I. (2023) · Molecular Plant-Microbe Interactions · doi:10.1094/mpmi-10-22-0213-r · Cited by 12
Kodama, S., Nishiuchi, T., & Kubo, Y. (2018) · Molecular Plant-Microbe Interactions · doi:10.1094/mpmi-05-18-0118-r · Cited by 12
Self-citationJiménez, M. F. T., Cuadros, D. F., & Vaillancourt, L. J. (2013) · Molecular Plant Pathology · doi:10.1111/mpp.12069 · Cited by 12
Self-citationYuan, Q., Chen, M., Yan, Y., Gu, Q., Huang, J., & Zheng, L. (2016) · BioMed Research International · doi:10.1155/2016/7496569 · Cited by 12
Cyclocarya paliurus Reprograms the Flavonoid Biosynthesis Pathway Against Colletotrichum fructicola
Zheng, X.-R., Zhang, M.-J., Qiao, Y.-H., Li, R., Alkan, N., Chen, J., & Chen, F. (2022) · Frontiers in Plant Science · doi:10.3389/fpls.2022.933484 · Cited by 11
Self-citationHan, M., Wang, C., Zhu, W., Pan, Y., Huang, L., & Nie, J. (2024) · Horticulture Research · doi:10.1093/hr/uhae078 · Cited by 11
Kaliapan, K., Mazlin, S. N. A., Chua, K.-O., Rejab, N. A., & Mohd‐Yusuf, Y. (2024) · Archives of Microbiology · doi:10.1007/s00203-024-03996-4 · Cited by 11
Baetsen-Young, A. M., Chen, H., Shiu, S., & Day, B. (2020) · The Plant Cell · doi:10.1093/plcell/koaa021 · Cited by 11
Wang, Y., Yao, J., Li, Z., Huo, J., Zhou, S., Liu, W., & Wu, H. (2021) · Molecular Plant-Microbe Interactions · doi:10.1094/mpmi-11-20-0311-a · Cited by 11
Self-citationZhou, N., Mu, M., Xie, H., Wu, Y. C., Zhou, Y., & Li, W. (2021) · Horticulturae · doi:10.3390/horticulturae7120560 · Cited by 11
Transcriptome analysis of asparagus in response to postharvest treatment with Yarrowia lipolytica
Godana, E. A., Zhang, X., Hu, W., Zhao, L., Gu, X., & Zhang, H. (2022) · Biological Control · doi:10.1016/j.biocontrol.2022.104906 · Cited by 11
Jiang, B., Cai, T., Yang, X., Dai, Y., Yu, K., Zhang, P., Li, P., Wang, C., Liu, N., Li, B., et al. (2022) · BMC Genomics · doi:10.1186/s12864-022-08493-w · Cited by 11
Nordzieke, D. E. (2022) · Microorganisms · doi:10.3390/microorganisms10061146 · Cited by 11
Sarkar, D., Majumder, S., Giri, K., & Sabnam, N. (2022) · Journal of Biomolecular Structure and Dynamics · doi:10.1080/07391102.2022.2139763 · Cited by 11
Chen, C., Chen, S., & Wang, B. (2023) · Frontiers in Microbiology · doi:10.3389/fmicb.2023.1035944 · Cited by 11
Colletotrichum species associated with fig (Ficus carica L.) in Malaysia
Nur‐Shakirah, A. O., Khadijah, M. S., Kee, Y. J., Chew, B. L., Zakaria, L., Nor, N. M. I. M., Subramanıam, S., Leong, Y., & Mohd, M. H. (2023) · Crop Protection · doi:10.1016/j.cropro.2023.106256 · Cited by 11
Beyond observation: genomic traits and machine learning algorithms for predicting fungal lifestyles
Chen, Y., Su, P., Stadler, M., Xiang, R., Hyde, K., Tian, W., & Maharachchikumbura, S. S. N. (2023) · Mycosphere · doi:10.5943/mycosphere/14/1/17 · Cited by 14
Prusky, D., Barad, S., Luria, N., & Ment, D. (2014) · Springer eBooks · doi:10.1007/978-3-319-07701-7_2 · Cited by 11
Self-citationMin, B., Park, J.-H., Park, H., Shin, H., & Choi, I. (2017) · Scientific Reports · doi:10.1038/srep40432 · Cited by 11
Nogueira, G. B., dos Santos, L. V., de Queiroz, C. B., Côrrea, T. L. R., Menicucci, R. P., Bazzolli, D. M. S., de Araújo, E. F., & de Queiroz, M. V. (2018) · Microbiological Research · doi:10.1016/j.micres.2018.10.005 · Cited by 11
Transcriptional Network in Colletotrichum gloeosporioides Mutants Lacking Msb2 or Msb2 and Sho1
Liu, N., Meng, F., & Tian, C. (2022) · Journal of Fungi · doi:10.3390/jof8020207 · Cited by 11
Taga, M., Tanaka, K., Kato, S., & Kubo, Y. (2015) · Fungal Genetics and Biology · doi:10.1016/j.fgb.2015.07.013 · Cited by 11
Self-citationHistological characterization of the early‐stage infection events of Setosphaeria turcica in maize
Fang, Y., Zhou, Y., Li, X., Gao, Y., Wang, D., Liu, M., & Zhang, Z. (2021) · Plant Pathology · doi:10.1111/ppa.13486 · Cited by 10
Wang, M., Du, Y., Jiao, W., & Fu, M. (2022) · Journal of Food Processing and Preservation · doi:10.1111/jfpp.16881 · Cited by 10
Tan, Q., Pu, J., Zhang, M., Chen, Z., Li, X., Zhu, Z., & Zhang, H. (2024) · Postharvest Biology and Technology · doi:10.1016/j.postharvbio.2024.113319 · Cited by 10
Self-citation
Metadata
- Authors
- O'Connell, R. J., Thon, M. R., Hacquard, S., Amyotte, S. G., Kleemann, J., Torres, M. F., Damm, U., Buiate, E. A., Epstein, L., Alkan, N., Altmüller, J., Alvarado-Balderrama, L., Bauser, C. A., Becker, C., Birren, B. W., Chen, Z., Choi, J., Crouch, J. A., Duvick, J. P., Farman, M. A., Gan, P., Heiman, D., Henrissat, B., Howard, R. J., Kabbage, M., Koch, C., Kracher, B., Kubo, Y., Law, A. D., Lebrun, M.-H., Lee, Y.-H., Miyara, I., Moore, N., Neumann, U., Nordström, K., Panaccione, D. G., Panstruga, R., Place, M., Proctor, R. H., Prusky, D., Rech, G., Reinhardt, R., Rollins, J. A., Rounsley, S., Schardl, C. L., Schwartz, D. C., Shenoy, N., Shirasu, K., Sikhakolli, U. R., Stüber, K., Sukno, S. A., Sweigard, J. A., Takano, Y., Takahara, H., Trail, F., van der Does, H. C., Voll, L. M., Will, I., Young, S., Zeng, Q., Zhang, J., Zhou, S., Dickman, M. B., Schulze-Lefert, P., Ver Loren van Themaat, E., Ma, L.-J., & Vaillancourt, L. J.
- Affiliations
- Universidad de Salamanca (ES)
- Max Planck Institute for Plant Breeding Research (DE)
- University of Kentucky (US)
- Royal Netherlands Academy of Arts and Sciences (NL)
- University of California, Davis (US)
- Agricultural Research Organization (IL)
- University of Cologne (DE)
- Broad Institute (US)
- GATC Biotech (Germany) (DE)
- Seoul National University (KR)
- Agricultural Research Service (US)
- DuPont (United States) (US)
- RIKEN (JP)
- Centre National de la Recherche Scientifique (FR)
- Texas A&M University (US)
- Friedrich-Alexander-Universität Erlangen-Nürnberg (DE)
- Kyoto Prefectural University (JP)
- Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement (FR)
- West Virginia University (US)
- University of Wisconsin–Madison (US)
- Max Planck Society (DE)
- University of Florida (US)
- Michigan State University (US)
- Kyoto University (JP)
- Corresponding author
- Vaillancourt, Lisa J
- ORCID
- Thon, Michael R
- Hacquard, Stéphane
- Damm, Ulrike
- Epstein, Lynn
- Alkan, Noam
- Altmüller, Janine
- Bauser, Christopher A
- Becker, Christian
- Birren, Bruce W
- Chen, Zehua
- Choi, Jaeyoung
- Crouch, Jo Anne
- Gan, Pamela
- Heiman, David
- Henrissat, Bernard
- Howard, Richard J
- Kabbage, Mehdi
- Kracher, Barbara
- Kubo, Yasuyuki
- Lebrun, Marc-Henri
- Lee, Yong-Hwan
- Moore, Neil
- Neumann, Ulla
- Nordström, Karl
- Panaccione, Daniel G
- Panstruga, Ralph
- Place, Michael
- Proctor, Robert H
- Prusky, Dov
- Rech, Gabriel
- Reinhardt, Richard
- Rollins, Jeffrey A
- Rounsley, Steve
- Schardl, Christopher L
- Schwartz, David C
- Shirasu, Ken
- Sukno, Serenella A
- Takano, Yoshitaka
- Takahara, Hiroyuki
- Trail, Frances
- Voll, Lars M
- Young, Sarah
- Zeng, Qiandong
- Zhang, Jingze
- Zhou, Shiguo
- Dickman, Martin B
- Ma, Li-Jun
- Vaillancourt, Lisa J
- Venue
- Nature Genetics
- Published
- 2012-08-12
- Volume
- 44
- Issue
- 9
- Pages
- 1060-1065
- ISSN
- 1061-4036 (ISSN-L)
- 1546-1718
- PMC
- PMC9754331
- OpenAlex
- W2003266704
- Cited by
- 1,047
- References
- 63
- Citations by year
- 2026: 61 · 2025: 79 · 2024: 77 · 2023: 85 · 2022: 97 · 2021: 107 · 2020: 67 · 2019: 65 · 2018: 77 · 2017: 73 · 2016: 82 · 2015: 67 · 2014: 61 · 2013: 43 · 2012: 6
- FWCI
- 26.83
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Nature Genetics (publishedVersion, cc-by-nc-sa)
- PubMed Central (publishedVersion, cc-by-nc-sa)
- PubMed (publishedVersion)
- MDC Repository (Max-Delbrueck-Center for Molecular Medicine) (acceptedVersion)
- HAL AMU (submittedVersion, other-oa)
- Data Archiving and Networked Services (DANS) (submittedVersion)
- RWTH Publications (RWTH Aachen) (submittedVersion)
- KNAW Research Portal (The Royal Netherlands Academy of Arts and Sciences) (submittedVersion)
- MPG.PuRe (Max Planck Society) (submittedVersion)
- Funders
- U.S. Department of Agriculture
- University of Kentucky
- Deutsche Forschungsgemeinschaft (SPP1212)
- Max-Planck-Gesellschaft
- Ministerio de Ciencia e Innovación
- Cooperative State Research, Education, and Extension Service (20093445720125, 2007-35600-17829)
- Topics
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Pathogens and Fungal Diseases
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Disease Resistance and Genetics
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant-Microbe Interactions and Immunity
- Keywords
- Colletotrichum higginsianum, Colletotrichum graminicola, plant pathogenic fungi, secreted effectors, pectin-degrading enzymes, hydrolytic enzymes, gene expression profiling, host-pathogen interaction, Arabidopsis thaliana, maize, comparative genomics
- MeSH terms
- Mitosporic Fungi, Models, Biological, Phylogeny, Plant Diseases, Gene Expression Regulation, Fungal, Cluster Analysis, Genome, Fungal, Arabidopsis, Sequence Analysis, DNA, Gene Expression Regulation, Developmental, Colletotrichum, Gene Expression Profiling, Host-Pathogen Interactions, Transcriptome
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review