Advantages and pitfalls in the application of mixed-model association methods

Yang, Jian, Zaitlen, Noah A, Goddard, Michael E, Visscher, Peter M, Price, Alkes L·2014·Nature Genetics

Cited by (1,001)

Items 401–500 of 1,001

  1. Mixed Model Association with Family-Biased Case-Control Ascertainment
    Tristan J. Hayeck, Po‐Ru Loh, Samuela J Pollack, Alexander Gusev, Nick J. Patterson, Noah Zaitlen, Alkes L. Price · 2016 · The American Journal of Human Genetics
  2. Subtle stratification confounds estimates of heritability from rare variants
    Gaurav Bhatia, Alexander Gusev, Po‐Ru Loh, Hilary K. Finucane, Bjarni Jóhann Vilhjálmsson, Stephan Ripke, Shaun Purcell, Eli A. Stahl, Mark J. Daly, Teresa R de Candia et al. · 2016 · bioRxiv (Cold Spring Harbor Laboratory)
  3. The shared genetic architecture of modifiable risk for Alzheimer's disease: a genomic structural equation modelling study
    Isabelle Francesca Foote, Benjamin M. Jacobs, Georgina Mathlin, Cameron James Watson, Phazha LK Bothongo, Sheena Waters, Ruth Dobson, Alastair John Noyce, Kamaldeep Singh Bhui, Ania Korszun et al. · 2022 · Neurobiology of Aging
  4. Leveraging the local genetic structure for trans-ancestry association mapping
    Jiashun Xiao, Mingxuan Cai, Xinyi Yu, Xianghong Hu, Gang Chen, Xiang Wan, Can Yang · 2022 · The American Journal of Human Genetics
  5. Multi-Trait Genomic Prediction Models Enhance the Predictive Ability of Grain Trace Elements in Rice
    Blaise Pascal Muvunyi, Wenli Zou, Junhui Zhan, Sang He, Guoyou Ye · 2022 · Frontiers in Genetics
  6. Polygenic Indices (aka Polygenic Scores) in Social Science: A Guide for Interpretation and Evaluation
    CALLIE HARBIN BURT · 2024 · Sociological Methodology
  7. Retrospective Association Analysis of Binary Traits: Overcoming Some Limitations of the Additive Polygenic Model
    Duo Jiang, Joelle S. Mbatchou, Mary Sara McPeek · 2015 · Human Heredity
  8. Genetic Architecture of Plasma Alpha‐Aminoadipic Acid Reveals a Relationship With High‐Density Lipoprotein Cholesterol
    Mingjian Shi, Chuan Wang, Hao Mei, Marinella G. Temprosa, José C. Florez, Mark Tripputi, Jordi Merino, Loren P. Lipworth, Xiao‐Ou Shu, Robert Edgardo Gerszten et al. · 2022 · Journal of the American Heart Association
  9. A genome‐wide association study of coping behaviors suggests FBXO45 is associated with emotional expression
    Chisato Shimanoe, Tsuyoshi Hachiya, Megumi Hara, Yuichiro Nishida, Keitaro Tanaka, Yoichi Sut­oh, Atsushi Shimizu, Asahi Hishida, Sayo Kawai, Rieko Okada et al. · 2018 · Genes Brain & Behavior
  10. A study paradigm integrating prospective epidemiologic cohorts and electronic health records to identify disease biomarkers
    Jonathan D. Mosley, QiPing Feng, Quinn Stanton Wells, Sara L. Van Driest, Christian M. Shaffer, Todd L. Edwards, Lisa A. Bastarache, Wei‐Qi Wei, Lea Karatheodoris Davis, Catherine Anne McCarty et al. · 2018 · Nature Communications
  11. Natural allelic variation of GVS 1 confers diversity in the regulation of leaf senescence in Arabidopsis
    Jae Il Lyu, Jin Hee Kim, Hyosub Chu, Mark A. Taylor, Sukjoon Jung, Seung Hee Baek, Hye Ryun Woo, Pyung Ok Lim, Jeongsik Kim · 2018 · New Phytologist
  12. Identifying markers for resistance to sugarcane orange rust (Puccinia kuehnii) via selective genotyping and capture sequencing
    Per H. McCord, Neil C. Glynn, Jack C. Comstock · 2019 · Euphytica
  13. Editing a gibberellin receptor gene improves yield and nitrogen fixation in soybean
    Jyh‐Haw Tang, Shuhan Yang, S.-P. Li, Xiuli Yue, Ting Jin, Xinyu Yang, Kai Zhang, Qianqian Yang, T K Liu, Shancen Zhao et al. · 2025 · Journal of Integrative Plant Biology
  14. Genome-wide association studies using binned genotypes
    Bingxing An, Xue Gao, Tianpeng Chang, Jiangwei Xia, Xiaoqiao Wang, Jian Miao, Lingyang Xu, Lupei Zhang, Yan Chen, Junya Li et al. · 2019 · Heredity
  15. Identification of new semen trait-related candidate genes in Duroc boars through genome-wide association and weighted gene co-expression network analyses
    Quanshun Mei, Chuanke Fu, Goutam Sahana, Yilong Chen, Lilin Yin, Yuanxin Miao, Shuhong Zhao, Tao Xiang · 2021 · Journal of Animal Science
  16. Investigating the genetic architecture of eye colour in a Canadian cohort
    Frida Lona‐Durazo, Rohit Thakur, Erola Pairo‐Castineira, Karen M. Funderburk, Tongwu Zhang, Michael A. Kovacs, Jiyeon Choi, Ian J. Jackson, Kevin M. Brown, Esteban Juan Parra · 2022 · iScience
  17. Mixed model-based deconvolution of cell-state abundances (MeDuSA) along a one-dimensional trajectory
    Liyang Song, Xiwei Sun, Ting Qi, Jian Yang · 2023 · Nature Computational Science
  18. Genomic analyses of withers height and linear conformation traits in German Warmblood horses using imputed sequence-level genotypes
    Paula Reich, Sandra Möller, K.F. Stock, Wietje Nolte, M. von Depka Prondzinski, Reinhard Reents, Ernst Kalm, Christa Kühn, Georg Erwin Thaller, Clemens Falker‐Gieske et al. · 2024 · Genetics Selection Evolution
  19. A brief guide to analyzing expression quantitative trait loci
    Byung Su Ko, Sung Bae Lee, Tae-Kyung Kim · 2024 · Molecules and Cells
  20. Genome‐wide meta‐analysis identifies a novel susceptibility signal at CACNA2D3 for nicotine dependence
    Xianyong Yin, Chris Bizon, Jeffrey L. Tilson, Yuan Lin, Ian R. Gizer, Cindy L. Ehlers, Kirk C. Wilhelmsen · 2017 · American Journal of Medical Genetics Part B Neuropsychiatric Genetics
  21. Genetic Contribution to Initial and Progressive Alcohol Intake Among Recombinant Inbred Strains of Mice
    Megan K. Mulligan, Wenyuan Zhao, Morgan Dickerson, Danny Arends, Pjotr Prins, Sonia A. Cavigelli, Elena E. Terenina, Pierre Mormède, Lu Lu, Byron C. Jones · 2018 · Frontiers in Genetics
  22. The influence of human genetic variation on Epstein–Barr virus sequence diversity
    Sina Rüeger, Christian Hammer, Alexis Loetscher, Paul J. McLaren, Dylan Lawless, Olivier Naret, Nina Khanna, Enos Bernasconi, Matthias L. Cavassini, Huldrych F. Günthard et al. · 2021 · Scientific Reports
  23. Unbiased metabolome screen leads to personalized medicine strategy for amyotrophic lateral sclerosis
    Sarah L. Boddy, Mahjabin Islam, Tobias Moll, Julian M. Kurz, David Burrows, Alexander McGown, Anushka Bhargava, Thomas Henry Julian, Calum Harvey, Jack N.G. Marshall et al. · 2022 · Brain Communications
  24. Characterizing Sensory Phenotypes of Subgroups with a Known Genetic Etiology Pertaining to Diagnoses of Autism Spectrum Disorder and Intellectual Disability
    Caitlin M. Hudac, Nicole R. Friedman, Victoria R. Ward, Rachel E. Estreicher, Grace C. Dorsey, Raphael Bernier, Evangeline C. Kurtz‐Nelson, Rachel K. Earl, Evan E. Eichler, Emily Neuhaus · 2023 · Journal of Autism and Developmental Disorders
  25. Leveraging genome characteristics to improve gene discovery for putamen subcortical brain structure
    Chi‐Hua Chen, Yunpeng Wang, Min‐Tzu Lo, Andrew Joseph Schork, Chun Chieh Fan, Dominic Holland, Karolina Kauppi, Olav Bjerkehagen Smeland, Srdjan Djurovic, Nilotpal Sanyal et al. · 2017 · Scientific Reports
  26. Genome-wide association for testis weight in the diversity outbred mouse population
    Yuan, Joshua T., Gatti, Daniel M., Philip, Vivek M., Kasparek, Steven, Kreuzman, Andrew M., Mansky, Benjamin, Sharif, Kayvon, Taterra, Dominik, Taylor, Walter M., Thomas, Mary et al. · 2018 · Mammalian Genome
  27. Testing Pleiotropy vs. Separate QTL in Multiparental Populations
    Frederick J. Boehm, Elissa J. Chesler, Brian S. Yandell, Karl W. Broman · 2019 · G3 Genes Genomes Genetics
  28. Alternate approach to stroke phenotyping identifies a genetic risk locus for small vessel stroke
    Joanna von Berg, Sander W. van der Laan, Patrick F. McArdle, Rainer Malik, Steven J. Kittner, Braxton D. Mitchell, Bradford B. Worrall, Jeroen de Ridder, Sara L. Pulit · 2020 · European Journal of Human Genetics
  29. Genome-wide association study and Mendelian randomization analysis provide insights for improving rice yield potential
    Jing Su, Kai Xu, Chao Wu, 李姿蓉, Zhongli Hu, Xingfei Zheng, Shufeng Song, Zhonghai Tang, Zhonghai Tang, Lanzhi Li · 2021 · Scientific Reports
  30. Genetic and environmental determinants of stressful life events and their overlap with depression and neuroticism
    Clarke, Toni-Kim, Zeng, Yanni, Navrady, Lauren, Xia, Charley, Haley, Chris, Campbell, Archie, Navarro, Pau, Amador, Carmen, Adams, Mark J., Howard, David M. et al. · 2018 · Wellcome Open Research
  31. Opportunities and Challenges of Predictive Approaches for Harnessing the Potential of Genetic Resources
    Johannes W. R. Martini, Terence Luke Molnar, José Luis Crossa, Sarah Hearne, Kevin Vail Pixley · 2021 · Frontiers in Plant Science
  32. Unravelling novel and pleiotropic genes for cannon bone circumference and bone mineral density in Yorkshire pigs
    Zijian Qiu, Wenwu Cai, Qian Liu, Kaiyue Liu, Chenxi Liu, Huilong Yang, Ruihua Huang, Pinghua Li, Qingbo Zhao · 2024 · Journal of Animal Science
  33. A high-density linkage map and sex-determination loci in Pacific white shrimp (Litopenaeus vannamei)
    Baltasar F. García, Vito A. Mastrochirico-Filho, Jousepth Gallardo-Hidalgo, Gabriel Ricardo Campos-Montes, Thania Medrano-Mendoza, Psique Victoria Rivero-Martínez, Alejandra Caballero-Zamora, Diogo Teruo Hashimoto, José Manuel Yañez · 2024 · BMC Genomics
  34. Testing for differences in polygenic scores in the presence of confounding
    Jennifer Blanc, Jeremy J. Berg · 2025 · Genetics
  35. lrgpr: interactive linear mixed model analysis of genome-wide association studies with composite hypothesis testing and regression diagnostics in R
    Gabriel E. Hoffman, Jason G. Mezey, Eric E. Schadt · 2014 · Bioinformatics
  36. Methods and Tools in Genome-wide Association Studies
    Anja Gumpinger, Damian Roqueiro, Dominik G. Grimm, Karsten Michael Borgwardt · 2018 · Methods in molecular biology
  37. Genetic Regulation of Biomarkers as Stress Proxies in Dairy Cows
    Marco Milanesi, Matilde Maria Passamonti, Katia Cappelli, Andrea Minuti, Valentino Palombo, Sandy Sgorlon, Stefano Capomaccio, Mariasilvia D’Andrea, Erminio Trevisi, Bruno Stefanon et al. · 2021 · Genes
  38. Genomic Studies Across the Lifespan Point to Early Mechanisms Determining Subcortical Volumes
    Quentin Le Grand, Claudia Liliana Satizábal, Muralidharan Sargurupremraj, Aniket Mishra, Aïcha Soumaré, Alexandre Laurent, Fabrice Crivello, Ami Tsuchida, Jean Shin, Mélissa Macalli et al. · 2021 · Biological Psychiatry Cognitive Neuroscience and Neuroimaging
  39. Genome-Wide Association Study Based on Plant Height and Drought-Tolerance Indices Reveals Two Candidate Drought-Tolerance Genes in Sweet Sorghum
    Yue Xin, Lina Gao, Wenming Hu, Qi Gao, Bin Yang, Jianguo Zhou, Cuilian Xu · 2022 · Sustainability
  40. QTL detection in a pedigreed breeding population of diploid potato
    George Korontzis, Marcos Malosetti, Chaozhi Zheng, Chris A. Maliepaard, H.A. Mulder, P. Lindhout, Roel F. Veerkamp, Fred A. van Eeuwijk · 2020 · Euphytica
  41. Genetic characterization of outbred Sprague Dawley rats and utility for genome-wide association studies
    Alexander F. Gileta, Christopher J. Fitzpatrick, Apurva S. Chitre, Celine L. St. Pierre, Elizabeth V. Joyce, Rachael J. Maguire, Africa M. McLeod, Natalia M. Gonzales, April E. Williams, Jonathan D. Morrow et al. · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
  42. Evaluating multi-ancestry genome-wide association methods: Statistical power, population structure, and practical implications
    Julie‐Alexia Dias, Tony Chen, Xing Hua, Xiaoyu Wang, Alex A Rodriguez, Ravi Madduri, Peter Kraft, Haoyu Zhang · 2025 · The American Journal of Human Genetics
  43. An Overview of Strategies for Detecting Genotype-Phenotype Associations Across Ancestrally Diverse Populations
    Irving Simonin Wilmer, Pedro Orozco-del-Pino, David Timothy Bishop, Mark Martin Iles, Carla Daniela Robles‐Espinoza · 2021 · Frontiers in Genetics
  44. Genome-wide association, prediction and heritability in bacteria with application toStreptococcus pneumoniae
    Sudaraka Mallawaarachchi, Gerry Q. Tonkin‐Hill, Nicholas J. Croucher, Paul Turner, Doug Speed, Jukka Corander, David J. Balding · 2022 · NAR Genomics and Bioinformatics
  45. Conserved QTL and chromosomal inversion affect resistance to columnaris disease in 2 rainbow trout ( Oncorhyncus mykiss ) populations
    Federico C. F. Calboli, Heikki Koskinen, Antti Nousianen, Clémence Fraslin, Ross D. Houston, Antti Kause · 2022 · G3 Genes Genomes Genetics
  46. Imputation to whole-genome sequence and its use in genome-wide association studies for pork colour traits in crossbred and purebred pigs
    Marzieh Heidaritabar, Abe Huisman, Kirill Krivushin, Paul Stothard, Elda Dervishi, Patrick Charagu, M.C.A.M. Bink, Graham Stuart Plastow · 2022 · Frontiers in Genetics
  47. An innovative model of psychological service delivery in primary healthcare: the Single-Session Intervention
    Kathy Perreault, Mylaine Breton, Djamal Berbiche · 2023 · BMC Family Practice
  48. Pitfalls in performing genome-wide association studies on ratio traits
    Zachary Ryan McCaw, Rounak Dey, Hari Somineni, David Amar, Sumit Mukherjee, Kaitlin P. Sandor, Theofanis Karaletsos, Daphne Koller, Hugues Aschard, George Davey Smith et al. · 2025 · Human Genetics and Genomics Advances
  49. Family-based genome-wide association study designs for increased power and robustness
    Junming Guan, Tammy Tan, Seyed Moeen Nehzati, Michael Bennett, Patrick Turley, Daniel Jacob Benjamin, Alexander I. Young · 2025 · Nature Genetics
  50. LDAK-KVIK performs fast and powerful mixed-model association analysis of quantitative and binary phenotypes
    Jasper P. Hof, Doug Speed · 2025 · Nature Genetics
  51. Statistical Methods for Genome‐Wide and Sequencing Association Studies of Complex Traits in Related Samples
    Timothy A. Thornton · 2015 · Current Protocols in Human Genetics
  52. Genome-wide association study of the seed transmission rate of soybean mosaic virus and associated traits using two diverse population panels
    Qiong Liu, Houston A. Hobbs, Leslie L. Domier · 2019 · Theoretical and Applied Genetics
  53. Genetic variants associated with two major bovine milk fatty acids offer opportunities to breed for altered milk fat composition
    T. M. Knutsen, H. G. Olsen, I. Ketto, K. K. Sundsaasen, A. Kohler, V. Tafintseva, M. Svendsen, M. Kent, S. Lien · 2022 · Genetics Selection Evolution
  54. Genetic Variation in Reproductive Investment Across an Ephemerality Gradient inDaphnia pulex
    Karen Barnard-Kubow, Dörthe Becker, Connor S. Murray, Robert Porter, Grace M. Gutierrez, Priscilla A. Erickson, Joaquin C. B. Nunez, Erin R. Voss, Kushal Suryamohan, Aakrosh Ratan et al. · 2022 · Molecular Biology and Evolution
  55. Bayesian variable selection for parametric survival model with applications to cancer omics data
    Weiwei Duan, Ruyang Zhang, Yang Zhao, Sipeng Shen, Yongyue Wei, Feng Chen, David C. Christiani · 2018 · Human Genomics
  56. Serum gamma-glutamyl transferase, a marker of alcohol intake, is associated with telomere length and cardiometabolic risk in young adulthood
    Esmée M. Bijnens, Catherine A Derom, Evert W. Thiery, Dries S. Martens, Ruth J. F. Loos, Steven Weyers, Tim S. Nawrot · 2021 · Scientific Reports
  57. Differences in longitudinal associations of cardiovascular risk factors with arterial stiffness and pressure wave reflection in middle-aged Japanese men
    Masatsune Fujii, Hirofumi Tomiyama, Hiroki Nakano, Yoichi Iwasaki, Chisa Matsumoto, Kazuki Shiina, Akira Yamashina, Taishiro Chikamori · 2020 · Hypertension Research
  58. Interpreting Deep Neural Networks Through Variable Importance
    Jonathan S. Ish-Horowicz, Dana Udwin, Seth R Flaxman, Sarah L. Filippi, Lorin A. Crawford · 2019 · arXiv (Cornell University)
  59. Contrasting regional architectures of schizophrenia and other complex diseases using fast variance components analysis
    Po‐Ru Loh, Gaurav Bhatia, Alexander Gusev, Hilary K. Finucane, Brendan K Bulik-Sullivan, Samuela J Pollack, Teresa R de Candia, Sang Lee, Naomi R. Wray, Kenneth S. Kendler et al. · 2015 · bioRxiv (Cold Spring Harbor Laboratory)
  60. A pan-cancer compendium of 1,294 plasma cell-free DNA methylomes and fragmentomes enabling multicancer detection
    Yong Zeng, Dor David Abelman, Althaf Singhawansa, Nicholas Cheng, Yuanchang Fang, Sasha C. Main, Emma Bell, Wenbin Ye, Ping Luo, Samantha L. Wilson et al. · 2026 · Nature Cancer
  61. Genetic and genomic approaches for breeding rust resistance in wheat
    Deepak Kumar Baranwal · 2022 · Euphytica
  62. The correlates of neonatal complement component 3 and 4 protein concentrations with a focus on psychiatric and autoimmune disorders
    Nis Borbye‐Lorenzen, Zhihong Zhu, Esben Agerbo, Clara Albiñana, Michael E. Benros, Beilei Bian, Anders Dupont Børglum, Cynthia Marie Bulik, Jean-Christophe Debost, Jakob Grove et al. · 2023 · Cell Genomics
  63. Optimising machine learning prediction of minimum inhibitory concentrations in Klebsiella pneumoniae
    Gherard Batisti Biffignandi, Leonid Chindelevitch, Marta Corbella, Edward J. Feil, Davide Sassera, John A. Lees · 2024 · Microbial Genomics
  64. PITX2 expression and Neanderthal introgression in HS3ST3A1 contribute to variation in tooth dimensions in modern humans
    Qing Li, Pierre Faux, Emma Wentworth Winchester, Guangrui Yang, Yingjie Chen, Luis Miguel Ramírez, Macarena Fuentes‐Guajardo, Lauriane Poloni, Émilie Steimetz, Rolando González‐José et al. · 2024 · Current Biology
  65. Characterization of DSM-IV Opioid Dependence Among Individuals of European Ancestry
    Leslie Ann D. Brick, Lauren Micalizzi, Valerie S. Knopik, Rohan H. C. Palmer · 2019 · Journal of Studies on Alcohol and Drugs
  66. Odyssey: a semi-automated pipeline for phasing, imputation, and analysis of genome-wide genetic data
    Ryan Jospeh Eller, Sarath Chandra Janga, Susan Walsh · 2019 · BMC Bioinformatics
  67. Genome-Wide Association Study in Two Cohorts from a Multi-generational Mouse Advanced Intercross Line Highlights the Difficulty of Replication Due to Study-Specific Heterogeneity
    Xinzhu Zhou, Celine L. St. Pierre, Natalia M. Gonzales, Jennifer Zou, Riyan Cheng, Apurva S. Chitre, Greta Sokoloff, Abraham A. Palmer · 2020 · G3 Genes Genomes Genetics
  68. The impact of SNP density on quantitative genetic analyses of body size traits in a wild population of Soay sheep
    Caelinn James, Josephine M. Pemberton, Pau Navarro, Sara Knott · 2022 · Ecology and Evolution
  69. GWAS of adventitious root formation in roses identifies a putative phosphoinositide phosphatase (SAC9) for marker-assisted selection
    David Wamhoff, Laurine Patzer, Dietmar Frank Schulz, Thomas Debener, Traud Winkelmann · 2023 · PLoS ONE
  70. Parallel evolution of integrated craniofacial traits in trophic specialist pupfishes
    Michelle E. St. John, Julia C. Dunker, Emilie J. Richards, Stephanie Romero, Christopher H. Martin · 2024 · Ecology and Evolution
  71. A genome-wide association study of social genetic effects in Landrace pigs
    Joon Ki Hong, Yong Dae Jeong, Eun Seok Cho, Tae-Jeong Choi, Yong‐Min Kim, Kyu-Ho Cho, Jae-Bong Lee, Hyun‐Tae Lim, Deukhwan Lee · 2017 · Asian-Australasian Journal of Animal Sciences
  72. Estimation of non-null SNP effect size distributions enables the detection of enriched genes underlying complex traits
    Wei Cheng, Sohini Ramachandran, Lorin A. Crawford · 2020 · PLoS Genetics
  73. A non-linear regression method for estimation of gene–environment heritability
    Matthew Kerin, Jonathan Marchini · 2020 · Bioinformatics
  74. Ultra-rare variants drive substantial cis -heritability of human gene expression
    Ryan D. Hernandez, Lawrence H. Uricchio, Kevin Hartman, Chun Ye, Andrew Dahl, Noah Zaitlen · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
  75. Quantitative trait mapping in Diversity Outbred mice identifies novel genomic regions associated with the hepatic glutathione redox system
    Rebecca Lizabeth Gould, Steven Wesley Craig, Susan McClatchy, Gary A. Churchill, Robert Pazdro · 2021 · Redox Biology
  76. Genomic regions, candidate genes, and pleiotropic variants associated with physiological and anatomical indicators of heat stress response in lactating sows
    Letícia Fernanda de Oliveira, Renata Veroneze, Katiene Régia Silva Sousa, Henrique A. Mulim, André Campêlo Araujo, Yijian Huang, Jay Steven Johnson, Luiz F. Brito · 2024 · BMC Genomics
  77. Association testing of bisulfite-sequencing methylation data via a Laplace approximation
    Omer Weissbrod, Elior Rahmani, Regev Schweiger, Saharon Rosset, Eran Halperin · 2017 · Bioinformatics
  78. Beta vulgaris ssp. vulgaris chromosome 8 shows significant association with geosmin concentration in table beet
    Solveig J. Hanson, Julie C. Dawson, Irwin L. Goldman · 2021 · G3 Genes Genomes Genetics
  79. Integrating genomics and multivariate evolutionary quantitative genetics: a case study of constraints on sexual selection in Drosophila serrata
    Adam J. Reddiex, Stephen F. Chenoweth · 2021 · Proceedings of the Royal Society B Biological Sciences
  80. Identification of genomic regions conferring rust resistance and enhanced mineral accumulation in a HarvestPlus Association Mapping Panel of wheat
    Deepak Kumar Baranwal, Suong Cu, James Stangoulis, Richard M. Trethowan, Harbans S. Bariana, Urmil K. Bansal · 2022 · Theoretical and Applied Genetics
  81. Transcriptome Analysis of Bovine Rumen Tissue in Three Developmental Stages
    Yapeng Zhang, Wentao Cai, Qian Li, Yahui Wang, Zezhao Wang, Qi Zhang, Lingyang Xu, Lei Xu, Xin Hu, Bo Zhu et al. · 2022 · Frontiers in Genetics
  82. Investigating the genetic components of tuber bruising in a breeding population of tetraploid potatoes
    Olivia Angelin‐Bonnet, Susan J. Thomson, Matthieu Vignes, Patrick J. Biggs, Katrina S. Monaghan, Rebecca H. Bloomer, Kathryn Mary Wright, Samantha J. Baldwin · 2023 · BMC Plant Biology
  83. Novel directions for G × E analysis in psychiatry
    Anna A. E. Vinkhuyzen, Naomi R. Wray · 2014 · Epidemiology and Psychiatric Sciences
  84. Cryptic relatedness in epidemiologic collections accessed for genetic association studies: experiences from the Epidemiologic Architecture for Genes Linked to Environment (EAGLE) study and the National Health and Nutrition Examination Surveys (NHANES)
    Jennifer R. Malinowski, Robert Goodloe, Kristin D. Brown-Gentry, Dana C. Crawford · 2015 · Frontiers in Genetics
  85. Comparison of gene-based rare variant association mapping methods for quantitative traits in a bovine population with complex familial relationships
    Qianqian Zhang, Bernt Guldbrandtsen, M.P.L. Calus, Mogens Sandø Lund, Goutam Sahana · 2016 · Genetics Selection Evolution
  86. Using Stochastic Approximation Techniques to Efficiently Construct Confidence Intervals for Heritability
    Regev Schweiger, Eyal Fisher, Elior Rahmani, Liat Shenhav, Saharon Rosset, Eran Halperin · 2018 · Journal of Computational Biology
  87. SNP-based mixed model association of growth- and yield-related traits in popcorn
    Gabrielle Sousa Mafra, Antônio Teixeira do Amaral Júnior, Janeo Eustáquio de Almeida Filho, Marcelo Vivas, Pedro Henrique Araújo Diniz Santos, Juliana Saltires Santos, Guilherme Ferreira Pena, Valter Jário de Lima, Samuel Henrique Kamphorst, Fábio Tomaz de Oliveira et al. · 2019 · PLoS ONE
  88. Simultaneous SNP selection and adjustment for population structure in high dimensional prediction models
    Sahir Bhatnagar, Yi Archer Yang, Tianyuan Lu, Erwin Schurr, J. Concepción Loredo‐Osti, Marie Forest, Karim Oualkacha, Celia M.T. Greenwood · 2020 · PLoS Genetics
  89. Trade-offs of Linear Mixed Models in Genome-Wide Association Studies
    Haohan Wang, Bryon Aragam, Eric P. Xing · 2022 · Journal of Computational Biology
  90. The genetic architectures of vine and skin maturity in tetraploid potato
    Maria V. Caraza‐Harter, Jeffrey B. Endelman · 2022 · Theoretical and Applied Genetics
  91. An efficient and accurate frailty model approach for genome-wide survival association analysis controlling for population structure and relatedness in large-scale biobanks
    Rounak Dey, Wei Zhou, Tuomo Kiiskinen, Aki Samuli Havulinna, Amanda Elliott, Juha M Karjalainen, Mitja Kurki, Ashley Qin, FinnGen, Seunggeun Lee et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  92. Self- and informant-reported personality traits and vaccination against COVID-19
    Kadri Arumäe, Anu Realo, Liisi Ausmees, Jüri Allïk, Tõnu Esko, Krista Fischer, Uku Vainik, René Mõttus · 2024 · PLoS ONE
  93. Mendelian randomization analysis of 34,497 German Holstein cows to infer causal associations between milk production and health traits
    Helen Schneider, Valentin P. Haas, Ana-Marija Križanac, Clemens Falker‐Gieske, Johannes Heise, Jens Tetens, Georg Thaller, Jörn Bennewitz · 2024 · Genetics Selection Evolution
  94. Inference of the genetic basis of fruit texture in highbush blueberries using genome-wide association analyses
    Luís Felipe V. Ferrão, Camila Ferreira Azevedo, Juliana Benevenuto, Molla Fentie Mengist, Claire H. Luby, Marti Pottorff, Gonzalo Casorzo, Ted Mackey, Mary Ann Lila, L. Giongo et al. · 2024 · Horticulture Research
  95. Genome-wide association and functional genomic analyses for body conformation traits in North American Holstein cattle
    Luis Paulo Batista Sousa, Luís Fernando Batista Pinto, Valdecy Aparecida Rocha da Cruz, Gerson A. Oliveira Júnior, Hinayah Rojas de Oliveira, Tatiane S. Chud, Victor Breno Pedrosa, F. Miglior, Flávio Schramm Schenkel, Luiz F. Brito · 2024 · Frontiers in Genetics
  96. Integration of genome‐wide association and extant brain expression QTL identifies candidate genes influencing prepulse inhibition in inbred F1 mice
    Laura J. Sittig, Peter S. Carbonetto, Kyle A. Engel, Kathleen S Krauss, Abraham A. Palmer · 2015 · Genes Brain & Behavior
  97. Identification of novel variants and candidate genes associated with porcine bone mineral density using genome-wide association study
    Jiuhong Nan, Lilin Yin, Zhenshuang-S Tang, Tao Xiang, Guozhen Ma, Xinyun-Y Li, Xiaolei-L Liu, Shuhong-H Zhao, Xiangdong-D Liu · 2020 · Journal of Animal Science
  98. Coupled mixed model for joint genetic analysis of complex disorders with two independently collected data sets
    Haohan Wang, Fen Pei, Michael M. Vanyukov, İvet Bahar, Wei Wu, Eric P. Xing · 2021 · BMC Bioinformatics
  99. Ethnic Identity and Genome Wide Runs of Homozygosity
    Martin Fieder, Brittany L. Mitchell, Scott D. Gordon, Susanne Huber, Nicholas G. Martin · 2021 · Behavior Genetics
  100. Cis-SNPs Set Testing and PrediXcan Analysis for Gene Expression Data using Linear Mixed Models
    Ping Zeng, Ting Wang, Shuiping Huang · 2017 · Scientific Reports