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A genome-wide association study identifies a susceptibility locus for refractive errors and myopia at 15q14

Open access
Solouki, Abbas M, Verhoeven, Virginie J M, van Duijn, Cornelia M, Verkerk, Annemieke J M H, Ikram, M Kamran, Hysi, Pirro G, Despriet, Dominiek D G, van Koolwijk, Leonieke M, Ho, Lintje, Ramdas, Wishal D, Czudowska, Monika, Kuijpers, Robert W A M, Amin, Najaf, Struchalin, Maksim, Aulchenko, Yurii S, van Rij, Gabriel, Riemslag, Frans C C, Young, Terri L, Mackey, David A, Spector, Timothy D, Gorgels, Theo G M F, Willemse-Assink, Jacqueline J M, Isaacs, Aaron, Kramer, Rogier, Swagemakers, Sigrid M A, Bergen, Arthur A B, van Oosterhout, Andy A L J, Oostra, Ben A, Rivadeneira, Fernando, Uitterlinden, André G, Hofman, Albert, de Jong, Paulus T V M, Hammond, Christopher J, Vingerling, Johannes R, Klaver, Caroline C W·2010·Nature Genetics

Abstract

Refractive errors are the most common ocular disorders worldwide and may lead to blindness. Although this trait is highly heritable, identification of susceptibility genes has been challenging. We conducted a genome-wide association study for refractive error in 5,328 individuals from a Dutch population-based study with replication in four independent cohorts (combined 10,280 individuals in the replication stage). We identified a significant association at chromosome 15q14 (rs634990, P = 2.21 × 10−14). The odds ratio of myopia compared to hyperopia for the minor allele (minor allele frequency = 0.47) was 1.41 (95% CI 1.16–1.70) for individuals heterozygous for the allele and 1.83 (95% CI 1.42–2.36) for individuals homozygous for the allele. The associated locus is near two genes that are expressed in the retina, GJD2 and ACTC1, and appears to harbor regulatory elements which may influence transcription of these genes. Our data suggest that common variants at 15q14 influence susceptibility for refractive errors in the general population.

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Metadata

Authors
Solouki, A. M., Verhoeven, V. J. M., van Duijn, C. M., Verkerk, A. J. M. H., Ikram, M. K., Hysi, P. G., Despriet, D. D. G., van Koolwijk, L. M., Ho, L., Ramdas, W. D., Czudowska, M., Kuijpers, R. W. A. M., Amin, N., Struchalin, M., Aulchenko, Y. S., van Rij, G., Riemslag, F. C. C., Young, T. L., Mackey, D. A., Spector, T. D., Gorgels, T. G. M. F., Willemse-Assink, J. J. M., Isaacs, A., Kramer, R., Swagemakers, S. M. A., Bergen, A. A. B., van Oosterhout, A. A. L. J., Oostra, B. A., Rivadeneira, F., Uitterlinden, A. G., Hofman, A., de Jong, P. T. V. M., Hammond, C. J., Vingerling, J. R., & Klaver, C. C. W.
Venue
Nature Genetics
Published
2010-09-12
Volume
42
Issue
10
Pages
897-901
ISSN
  • 1061-4036 (ISSN-L)
  • 1546-1718
OpenAlex
W2068510973
Cited by
218
References
2
FWCI
18.66
Type
journal article
Language
en
Open access
bronze

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