Student or educator? Sign up with your school email and get 6 months of Pro free.
CoChat
Sign Up
Cited by 407

The DOI matches its Crossref record; 2 of the 2 references it cites were found in a registry or an index.

A distant upstream enhancer at the maize domestication gene tb1 has pleiotropic effects on plant and inflorescent architecture

Clark, Richard M, Wagler, Tina Nussbaum, Quijada, Pablo, Doebley, John·2006·Nature Genetics
DOI 10.1038/ng1784
Open this paper in CoChat — free account

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1038/ng1784

Cites

2 of 2 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Show all 2 references

Research works printed but not linked: 27

  1. Doebley, J. The genetics of maize evolution. Annu. Rev. Genet. 38, 37–59 (2004). · DOI · Paper page
  2. Mackay, T.F. The genetic architecture of quantitative traits: lessons from Drosophila. Curr. Opin. Genet. Dev. 14, 253–257 (2004). · DOI · Paper page
  3. Tanksley, S.D. The genetic, developmental, and molecular bases of fruit size and shape variation in tomato. Plant Cell 16 (Suppl.), S181–S189 (2004). · DOI · Paper page
  4. Doebley, J., Stec, A. & Gustus, C. teosinte branched1 and the origin of maize: evidence for epistasis and the evolution of dominance. Genetics 141, 333–346 (1995). · DOI · Paper page
  5. Doebley, J., Stec, A. & Hubbard, L. The evolution of apical dominance in maize. Nature 386, 485–488 (1997). · DOI · Paper page
  6. Alonso-Blanco, C., Mendez-Vigo, B. & Koornneef, M. From phenotypic to molecular polymorphisms involved in naturally occurring variation of plant development. Int. J. Dev. Biol. 49, 717–732 (2005). · DOI
  7. Salvi, S. & Tuberosa, R. To clone or not to clone plant QTLs: present and future challenges. Trends Plant Sci. 10, 297–304 (2005). · DOI · Paper page
  8. Frary, A. et al. fw2.2: a quantitative trait locus key to the evolution of tomato fruit size. Science 289, 85–88 (2000). · DOI · Paper page
  9. Koornneef, M., Alonso-Blanco, C. & Vreugdenhil, D. Naturally occurring genetic variation in Arabidopsis thaliana. Annu. Rev. Plant Biol. 55, 141–172 (2004). · DOI · Paper page
  10. SanMiguel, P. et al. Nested retrotransposons in the intergenic regions of the maize genome. Science 274, 765–768 (1996). · DOI · Paper page
  11. Meagher, T.R. & Vassiliadis, C. Phenotypic impacts of repetitive DNA in flowering plants. New Phytol. 168, 71–80 (2005). · doi:10.1111/j.1469-8137.2005.01527.x
  12. Doebley, J. & Stec, A. Genetic analysis of the morphological differences between maize and teosinte. Genetics 129, 285–295 (1991). · DOI · Paper page
  13. Doebley, J., Stec, A., Wendel, J. & Edwards, M. Genetic and morphological analysis of a maize-teosinte F2 population: implications for the origin of maize. Proc. Natl. Acad. Sci. USA 87, 9888–9892 (1990). · DOI · Paper page
  14. Lukens, L.N. & Doebley, J. Epistatic and environmental interactions for quantitative trait loci involved in maize evolution. Genet. Res. 74, 291–302 (1999). · DOI
  15. Clark, R.M., Linton, E., Messing, J. & Doebley, J.F. Pattern of diversity in the genomic region near the maize domestication gene tb1. Proc. Natl. Acad. Sci. USA 101, 700–707 (2004). · DOI · Paper page
  16. Thornsberry, J.M. et al. Dwarf8 polymorphisms associate with variation in flowering time. Nat. Genet. 28, 286–289 (2001). · DOI · Paper page
  17. Sheehan, M.J., Farmer, P.R. & Brutnell, T.P. Structure and expression of maize phytochrome family homeologs. Genetics 167, 1395–1405 (2004). · DOI
  18. Simons, K.J. et al. Molecular characterization of the major wheat domestication gene. Q. Genetics 172, 547–555 (2006). · DOI · Paper page
  19. Wang, H. et al. The origin of the naked grains of maize. Nature 436, 714–719 (2005). · DOI · Paper page
  20. Stam, M. et al. The regulatory regions required for B′ paramutation and expression are located far upstream of the maize b1 transcribed sequences. Genetics 162, 917–930 (2002). · DOI
  21. Wendel, J.F., Cronn, R.C., Johnston, J.S. & Price, H.J. Feast and famine in plant genomes. Genetica 115, 37–47 (2002). · DOI
  22. Bennetzen, J.L., Ma, J. & Devos, K.M. Mechanisms of recent genome size variation in flowering plants. Ann. Bot. (Lond.) 95, 127–132 (2005). · DOI · Paper page
  23. Rostoks, N. et al. Genomic sequencing reveals gene content, genomic organization, and recombination relationships in barley. Funct. Integr. Genomics 2, 51–59 (2002). · doi:10.1007/s10142-002-0055-5
  24. Wicker, T. et al. Analysis of a contiguous 211 kb sequence in diploid wheat (Triticum monococcum L.) reveals multiple mechanisms of genome evolution. Plant J. 26, 307–316 (2001). · DOI · Paper page
  25. Wicker, T. et al. A detailed look at 7 million years of genome evolution in a 439 kb contiguous sequence at the barley Hv-eIF4E locus: recombination, rearrangements and repeats. Plant J. 41, 184–194 (2005). · DOI
  26. Ihaka, R. & Gentleman, R.R. A language for data analysis and graphics. J. Comput. Graph. Stat. 5, 299–314 (1996). · DOI · Paper page
  27. Doebley, J. & Stec, A. Inheritance of the morphological differences between maize and teosinte: comparison of results for two F2 populations. Genetics 134, 559–570 (1993). · DOI · Paper page

Cited by

See all 407

Metadata

Authors
Clark, R. M., Wagler, T. N., Quijada, P., & Doebley, J.
Venue
Nature Genetics
Publisher
Springer Science and Business Media LLC
Published
2006-04-23
Volume
38
Issue
5
Pages
594-597
ISSN
  • 1061-4036 (ISSN-L)
  • 1546-1718
DOI
10.1038/ng1784
OpenAlex
W2098773881
Cited by
407
References
2
FWCI
15.73
Type
journal article
Language
en
Open access
closed
Licence
www.springer.com/tdm (tdm)

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

How to cite

Cite CoChat for the checks on this page, and the paper for its own findings.

This page
CoChat. (2026). Citation check: A distant upstream enhancer at the maize domestication gene tb1 has pleiotropic effects on plant and inflorescent architecture. https://app.cochat.ai/papers/10.1038/ng1784
The paper
Clark, R. M., Wagler, T. N., Quijada, P., & Doebley, J. (2006). A distant upstream enhancer at the maize domestication gene tb1 has pleiotropic effects on plant and inflorescent architecture. Nature Genetics. https://doi.org/10.1038/ng1784

Data sources

Bibliographic data: Semantic Scholar, OpenAlex, Crossref.

Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).

Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.