Automated monitoring and analysis of social behavior in Drosophila

Dankert, Heiko, Wang, Liming, Hoopfer, Eric D, Anderson, David J, Perona, Pietro·2009·Nature Methods
DOI 10.1038/nmeth.1310

Cited by (378)

Items 101–200 of 378

  1. Strain differences in the collective behaviour of zebrafish ( Danio rerio ) in heterogeneous environment
    Axel Séguret, Bertrand Collignon, José Halloy · 2016 · Royal Society Open Science
  2. An automated system for the recognition of various specific rat behaviours
    Elsbeth A. van Dam, Johanneke E. van der Harst, Cajo J. F. ter Braak, Ruud A.J. Tegelenbosch, Berry M. Spruijt, Lucas P. J. J. Noldus · 2013 · Journal of Neuroscience Methods
  3. The Multi-Agent Behavior Dataset: Mouse Dyadic Social Interactions
    Jennifer J. Sun, Tomomi Karigo, Dipam Chakraborty, Sharada P. Mohanty, Benjamin Wild, Quan Sun, Chen, Chen, David J. Anderson, Pietro Perona, Yisong Yue et al. · 2021 · PubMed
  4. Evolutionary genetics of host shifts in herbivorous insects: insights from the age of genomics
    Kim L. Vertacnik, Catherine R. Linnen · 2017 · Annals of the New York Academy of Sciences
  5. Sexual Dimorphism in Aggression: Sex-Specific Fighting Strategies Across Species
    Matías Pandolfi, María Florencia Scaia, Maria P. Fernandez · 2021 · Frontiers in Behavioral Neuroscience
  6. Drosophila Courtship Conditioning As a Measure of Learning and Memory
    Tom S. Koemans, Cornelia Oppitz, Rogier T. Donders, Hans van Bokhoven, Annette Schenck, Krystyna Keleman, Jamie M. Kramer · 2017 · Journal of Visualized Experiments
  7. Automated 3D trajectory measuring of large numbers of moving particles
    Hai Shan Wu, Qi Zhao, Danping Zou, Yan Qiu Chen · 2011 · Optics Express
  8. Automated pose estimation in primates
    Benjamin Y. Hayden, Hyun Soo Park, Jan Zimmermann · 2021 · American Journal of Primatology
  9. Characterizing the structure of mouse behavior using Motion Sequencing
    Sherry Lin, Winthrop F. Gillis, Caleb Weinreb, Ayman Zeine, Samuel C. Jones, Emma Marie Robinson, Jeffrey E. Markowitz, Sandeep Robert Datta · 2024 · Nature Protocols
  10. Automated Quantification of Locomotion, Social Interaction, and Mate Preference in Drosophila Mutants
    Atulya Srisudarshan Ram Iyengar, Jordan Imoehl, Atsushi Ueda, Jeffrey Nirschl, Chun‐Fang Wu · 2012 · Journal of Neurogenetics
  11. Behavioral barcoding in the cloud: embracing data-intensive digital phenotyping in neuropharmacology
    David Kokel, Andrew J. Rennekamp, Asmi H. Shah, Urban Liebel, Randall Theodore Peterson · 2012 · Trends in biotechnology
  12. Automated real-time quantification of group locomotor activity in Drosophila melanogaster
    Kristin M. Scaplen, Nicholas J. Mei, Hayley A. Bounds, Sophia L. Song, Reza Azanchi, Karla R. Kaun · 2019 · Scientific Reports
  13. Dopamine Modulates the Rest Period Length without Perturbation of Its Power Law Distribution in Drosophila melanogaster
    Taro Ueno, Naoki Masuda, Shoen Kume, Kazuhiko Kume · 2012 · PLoS ONE
  14. Dynamic structure of locomotor behavior in walking fruit flies
    Katsov, Alexander Y, Freifeld, Limor, Horowitz, Mark, Kuehn, Seppe, Clandinin, Thomas R · 2017 · eLife
  15. Rage Against the Machine: Advancing the study of aggression ethology via machine learning.
    Nastacia L. Goodwin, Simon R. O. Nilsson, Sam A. Golden · 2020 · Psychopharmacology
  16. CATER: Combined Animal Tracking & Environment Reconstruction
    Lars Haalck, Michael Mangan, Antoine Wystrach, Léo Clément, Barbara H. Webb, Benjamin Risse · 2023 · Science Advances
  17. Quantifying behavior to solve sensorimotor transformations: advances from worms and flies
    Adam J. Calhoun, Mala Murthy · 2017 · Current Opinion in Neurobiology
  18. Visual Tracking of Small Animals in Cluttered Natural Environments Using a Freely Moving Camera
    Benjamin Risse, Michael Mangan, Luca Del Pero, Barbara H. Webb · 2017 · IEEE International Conference on Computer Vision Workshops
  19. Optogenetic control of selective neural activity in multiple freely moving Drosophila adults
    Ming-Chin Wu, Li‐An Chu, Po-Yen Hsiao, Yen-Yin Lin, Chen-Chieh Chi, Tsung-Ho Liu, Chien‐Chung Fu, Ann‐Shyn Chiang · 2014 · Proceedings of the National Academy of Sciences
  20. FlyLimbTracker: An active contour based approach for leg segment tracking in unmarked, freely behaving Drosophila
    Virginie Uhlmann, Pavan P Ramdya, Ricard Delgado-Gonzalo, Richard Benton, Michael A. Unser · 2017 · PLoS ONE
  21. Animal-in-the-Loop: Using Interactive Robotic Conspecifics to Study Social Behavior in Animal Groups
    Tim Landgraf, Gregor H. W. Gebhardt, David Bierbach, Paweł Romańczuk, Lea Maria Musiolek, Verena V. Hafner, Jens Krause · 2020 · Annual Review of Control Robotics and Autonomous Systems
  22. Behavioral signatures of structured feature detection during courtship in Drosophila
    Jing Ning, Zhou Li, Xingjiang Zhang, Junlong Wang, Dandan Chen, Qiong Liu, Yi Sun · 2022 · Current Biology
  23. Parallelized computational 3D video microscopy of freely moving organisms at multiple gigapixels per second
    Kevin C. Zhou, Mark Harfouche, Colin Cooke, Jaehee Park, Pavan Chandra Konda, Lucas A. Kreiss, Kanghyun Kim, Joakim Jönsson, Jed Doman, Paul Reamey et al. · 2023 · Nature Photonics
  24. Computer Vision to Enhance Behavioral Research on Insects
    Nicholas C. Manoukis, Travis C. Collier · 2018 · Annals of the Entomological Society of America
  25. The Drosophila visual system
    Yan Zhu · 2013 · Cell Adhesion & Migration
  26. Context-Aware Mouse Behavior Recognition Using Hidden Markov Models
    Zheheng Jiang, Danny Crookes, Brian D. Green, Yunfeng Zhao, Haiping Ma, Ling Li, Shengping Zhang, Dacheng Tao, Huiyu Zhou · 2018 · IEEE Transactions on Image Processing
  27. Recent Advances at the Interface of Neuroscience and Artificial Neural Networks
    Yarden Cohen, Tatiana A. Engel, Christopher Langdon, Grace W. Lindsay, Torben Ott, Megan A. K. Peters, James M. Shine, Vincent Breton‐Provencher, Srikanth Ramaswamy · 2022 · Journal of Neuroscience
  28. A Perspective on Wearable Sensor Measurements and Data Science for Parkinson’s Disease
    Ricardo Matias, Vítor Paixão, Raquel Bouça‐Machado, Joaquim José Ferreira · 2017 · Frontiers in Neurology
  29. Automated analysis of long-term grooming behavior in Drosophila using a k-nearest neighbors classifier
    Bing Qiao, Chiyuan Li, Victoria W. Allen, Mimi Shirasu‐Hiza, Sheyum Syed · 2018 · eLife
  30. MAPLE (modular automated platform for large-scale experiments), a robot for integrated organism-handling and phenotyping
    Tom Alisch, James D. Crall, Albert B. Kao, Dave Zucker, Benjamin L. de Bivort · 2018 · eLife
  31. Automated identification of social interaction criteria in Drosophila melanogaster
    Jonathan Schneider, Joel D. Levine · 2014 · Biology Letters
  32. Acoustic Indicators for Targeted Detection of Stored Product and Urban Insect Pests by Inexpensive Infrared, Acoustic, and Vibrational Detection of Movement
    Richard Wendell Mankin, R.D. Hodges, H. Troy Nagle, Coby Schal, Roberto Manoel Pereira, Philip G. koehler · 2010 · Journal of Economic Entomology
  33. GroupTracker: Video tracking system for multiple animals under severe occlusion
    Tsukasa Fukunaga, Shoko Kubota, Shoji Oda, Wataru Iwasaki · 2015 · Computational Biology and Chemistry
  34. Sex-determining genes distinctly regulate courtship capability and target preference via sexually dimorphic neurons
    Kenichi Ishii, Margot P. Wohl, Andre DeSouza, Kenta Asahina · 2020 · eLife
  35. The iFly tracking system for an automated locomotor and behavioural analysis of Drosophila melanogaster
    Kai Kohlhoff, Thomas Robert Jahn, David A. Lomas, Christopher Martin Dobson, Damian C. Crowther, Michele Vendruscolo · 2011 · Integrative Biology
  36. Automated Processing of Imaging Data through Multi-tiered Classification of Biological Structures Illustrated Using Caenorhabditis elegans
    Mei Zhan, Matthew M. Crane, Eugeni V. Entchev, Antonio Caballero, Diana Andrea Fernandes de Abreu, Quee-Lim Ch'ng, Hang Lu · 2015 · PLoS Computational Biology
  37. Correction: High-Resolution Positional Tracking for Long-Term Analysis of Drosophila Sleep and Locomotion Using the “Tracker” Program
    Nathan C. Donelson, Eugene Z. Kim, Justin B. Slawson, Christopher G. Vecsey, Robert Huber, Leslie C. Griffith · 2012 · PLoS ONE
  38. Lessons from lonely flies: Molecular and neuronal mechanisms underlying social isolation
    R Sai Prathap Yadav, Faizah Ansari, Neha Bera, Clement F. Kent, Pavan Agrawal · 2023 · Neuroscience & Biobehavioral Reviews
  39. Human Action Performance Using Deep Neuro-Fuzzy Recurrent Attention Model
    Nihar Bendre, Nima Ebadi, John Jeffery Prevost, Peyman Najafirad · 2020 · IEEE Access
  40. Vision of a Visipedia
    Pietro Perona · 2010 · Proceedings of the IEEE
  41. Designing a socially integrated mobile robot for ethological research
    Anton Gribovskiy, José Halloy, Jean‐Louis Deneubourg, Francesco Mondada C · 2018 · Robotics and Autonomous Systems
  42. Drosophila as a Model for Human Disease: Insights into Rare and Ultra-Rare Diseases
    Sergio Casas‐Tintó · 2024 · Insects
  43. Tracking zebrafish larvae in group – Status and perspectives
    Pierre R. Martineau, Philippe Mourrain · 2013 · Methods
  44. Systems neuroscience in Drosophila: Conceptual and technical advantages
    Hokto Kazama · 2014 · Neuroscience
  45. Self-Supervised Keypoint Discovery in Behavioral Videos
    Jennifer J. Sun, Serim Ryou, Roni H. Goldshmid, Brandon Weissbourd, John O. Dabiri, David J. Anderson, Ann Kennedy, Yisong Yue, Pietro Perona · 2022 · IEEE Computer Society Conference on Computer Vision and Pattern Recognition/Proceedings - IEEE Computer Society Conference on Computer Vision and Pattern Recognition/Proceedings
  46. Social Behavioral Phenotyping of Drosophila With a 2D–3D Hybrid CNN Framework
    Ziping Jiang, Paul Louis Chazot, M. Emre Celebi, Danny Crookes, Richard Jiang · 2019 · IEEE Access
  47. Sleeping Together
    Jeffrey M. Donlea, Paul J. Shaw · 2009 · Advances in genetics
  48. A simple computer vision pipeline reveals the effects of isolation on social interaction dynamics in Drosophila
    Guangda Liu, Tanmay Nath, Gerit Arne Linneweber, Annelies Claeys, Zhengyu Guo, Jin Li, Mercedes Bengochea, Steve De Backer, Barbara Weyn, Manu Sneyders et al. · 2018 · PLoS Computational Biology
  49. Development of a New Method to Track Multiple Honey Bees with Complex Behaviors on a Flat Laboratory Arena
    Toshifumi Kimura, Mizue Ohashi, Karl Crailsheim, Thomas Schmickl, Ryuichi Okada, Gerald Radspieler, Hidetoshi Ikeno · 2014 · PLoS ONE
  50. Automated analysis of courtship suppression learning and memory in Drosophila melanogaster
    Md Alimoor Reza, Siddhita D. Mhatre, J. Calvin Morrison, Suruchi Utreja, Aleister J. Saunders, David E. Breen, Daniel R. Marenda · 2013 · Fly
  51. Social behavioral profiling by unsupervised deep learning reveals a stimulative effect of dopamine D3 agonists on zebrafish sociality
    Yijie Geng, Christopher M. Yates, Randall Theodore Peterson · 2023 · Cell Reports Methods
  52. Genomic Analysis of Genotype-by-Social Environment Interaction for Drosophila melanogaster Aggressive Behavior
    Palle Duun Rohde, Bryn E Gaertner, Kirsty J. Weitzel, Peter Sørensen, Trudy F. C. Mackay · 2017 · Genetics
  53. Global Instance Tracking: Locating Target More Like Humans
    Shiyu Hu, Xin Zhao, Lianghua Huang, Kaiqi Huang · 2022 · IEEE Transactions on Pattern Analysis and Machine Intelligence
  54. The ethomics era?
    Michael B. Reiser · 2009 · Nature Methods
  55. A General Methodology for the Control of Mixed Natural Artificial Societies
    Francesco Mondada C, Alcherio Martinoli, Nicolaus Correll, Alexey Gribovskiy, José Halloy, Roland Siegwart, Jean‐Louis Deneubourg · 2013 · Dépôt institutionnel de l'Université libre de Bruxelles (Université Libre de Bruxelles)
  56. Zebrafish aggression on the sub-second time scale: evidence for mutual motor coordination and multi-functional attack manoeuvres
    Andres Laan, Marta Iglesias-Julios, Gonzalo G. de Polavieja · 2018 · Royal Society Open Science
  57. Reported Drosophila courtship song rhythms are artifacts of data analysis
    David L. Stern · 2014 · BMC Biology
  58. The peacefulness gene promotes aggression in Drosophila
    Mahmoudreza Ramin, Yueyang Li, Wen-Tzu Chang, Hunter S. Shaw, Yong Rao · 2019 · Molecular Brain
  59. A simplified courtship conditioning protocol to test learning and memory in Drosophila
    Beatriz Gil-Martí, Celia G. Barredo, Sara Pina-Flores, Adriana Poza-Rodriguez, Gaia Treves, Carmen Rodríguez‐Navas, Lucía Camacho, Atenea Pérez-Serna, Iñaki Jiménez, Laura Brazales et al. · 2023 · STAR Protocols
  60. Personality beyond taxonomy
    Julien Dubois, Frederick Eberhardt, Lynn K. Paul, Ralph Adolphs · 2020 · Nature Human Behaviour
  61. Aggression and social experience: genetic analysis of visual circuit activity in the control of aggressiveness in Drosophila
    Mahmoudreza Ramin, Claudiu Domocos, David Slawaska‐Eng, Yong Rao · 2014 · Molecular Brain
  62. Isolation of Aggressive Behavior Mutants in Drosophila Using a Screen for Wing Damage
    Shaun M. Davis, Amanda Thomas‐Wilson, Lingzhi Liu, Ian M. Campbell, Herman A. Dierick · 2017 · Genetics
  63. Computer Methods for Automatic Locomotion and Gesture Tracking in Mice and Small Animals for Neuroscience Applications: A Survey
    Abbas, Waseem, Masip Rodo, David · 2019 · Sensors
  64. Beyond the response—High throughput behavioral analyses to link genome to phenome in Caenorhabditis elegans
    Troy A. McDiarmid, AJ Yu, Catharine H. Rankin · 2018 · Genes Brain & Behavior
  65. Animal behavior and animal personality from a non-human perspective: Getting help from the machine
    Oren Forkosh · 2021 · Patterns
  66. Concomitant Assessment of Depth of Sedation by Changes in Bispectral Index and Changes in Autonomic Variables (Heart Rate and/or BP) in Pediatric Critically Ill Patients Receiving Neuromuscular Blockade
    Randi M. Trope, Peter C. Silver, Mayer Sagy · 2005 · CHEST Journal
  67. Versatile method to measure locomotion in adult Drosophila
    Taylor Barwell, Sehaj Raina, Laurent Seroude · 2020 · Genome
  68. Long-duration animal tracking in difficult lighting conditions
    Ulrich Stern, Edward Yun Zhu, Ruo He, Chung-Hui Yang · 2015 · Scientific Reports
  69. Conserved Tao Kinase Activity Regulates Dendritic Arborization, Cytoskeletal Dynamics, and Sensory Function inDrosophila
    Chun Hu, Alexandros K. Kanellopoulos, Melanie Richter, Meike Petersen, Anja Konietzny, Federico Marcello Tenedini, Nina Hoyer, Lin Cheng, Carole L.C. Poon, Kieran F. Harvey et al. · 2020 · Journal of Neuroscience
  70. The Divider Assay is a high-throughput pipeline for aggression analysis in Drosophila
    Budhaditya Chowdhury, Meng Wang, Joshua P. Gnerer, Herman A. Dierick · 2021 · Communications Biology
  71. Failure to mate enhances investment in behaviors that may promote mating reward and impairs the ability to cope with stressors via a subpopulation of Neuropeptide F receptor neurons
    Julia Ryvkin, Liora Omesi, Yong‐Kyu Kim, Mali Levi, Hadar Pozeilov, Lital Barak-Buchris, Bella Agranovich, Ifat Abramovich, Eyal Gottlieb, Avi Jacob et al. · 2024 · PLoS Genetics
  72. Intelligent high‐throughput intervention testing platform in Daphnia
    Yongmin Cho, Rachael Alice Jonas-Closs, Lev Y. Yampolsky, Marc W. Kirschner, Leonid Peshkin · 2022 · Aging Cell
  73. Swing Boat: Inducing and Recording Locomotor Activity in a Drosophila melanogaster Model of Alzheimer’s Disease
    Johannes Berlandi, Fang-Ju Lin, Oliver Ambrée, Dirk Rieger, Werner Paulus, Astrid Jeibmann · 2017 · Frontiers in Behavioral Neuroscience
  74. Dexterous robotic manipulation of alert adult Drosophila for high-content experimentation
    Joan Savall, Eric Tatt Wei Ho, Cheng Huang, Jessica R. Maxey, Mark J. Schnitzer · 2015 · Nature Methods
  75. 3D Holographic Observatory for Long-term Monitoring of Complex Behaviors in Drosophila
    S. Santosh Kumar, Yaning Sun, Sige Zou, Jiarong Hong · 2016 · Scientific Reports
  76. Supervised machine learning aided behavior classification in pigeons
    Neslihan Wittek, Kevin Wittek, Christopher Keibel, Onur Güntürkün · 2022 · Behavior Research Methods
  77. High-resolution behavioral mapping of electric fishes in Amazonian habitats
    Manu Sasidharan Madhav, Ravikrishnan P. Jayakumar, Alican Demir, Sarah A. Stamper, Eric S. Fortune, Noah John Cowan · 2018 · Scientific Reports
  78. A Lazy Man's Approach to Benchmarking: Semisupervised Classifier Evaluation and Recalibration
    Peter Welinder, Max Welling, Pietro Perona · 2013 · IEEE Computer Society Conference on Computer Vision and Pattern Recognition/Proceedings - IEEE Computer Society Conference on Computer Vision and Pattern Recognition/Proceedings
  79. Strategy changes in subsequent fights as consequences of winning and losing in fruit fly fights
    Séverine Trannoy, Edward A. Kravitz · 2016 · Fly
  80. Mouse Academy: high-throughput automated training and trial-by-trial behavioral analysis during learning
    Mu Qiao, Tony Zhang, Cristina Segalin, Sarah Sam, Pietro Perona, Markus Meister · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
  81. High-throughput automated methods for classical and operant conditioning of Drosophila larvae
    Elise C Croteau-Chonka, Michael S. Clayton, Lalanti Venkatasubramanian, Samuel N Harris, Benjamin M.W. Jones, Lakshmi Narayan, Michael Winding, Jean‐Baptiste Masson, Marta Zlatic, Kristina T Klein · 2022 · eLife
  82. From information to knowledge: new technologies for defining gene function
    Sean R. Collins, Jonathan S. Weissman, Nevan J. Krogan · 2009 · Nature Methods
  83. Ultra-Low Power Optical Sensor for Xylophagous Insect Detection in Wood
    Ángel Perles, Ricardo Mercado, Juan Vicente Capella, Juan Serrano · 2016 · Sensors
  84. A neurogenetic mechanism of experience-dependent suppression of aggression
    Ishii, Kenichi, Cortese, Matteo, Leng, Xubo, Shokhirev, Maxim N., Asahina, Kenta · 2022 · Science Advances
  85. Gait tracking in dogs using DeepLabCut: A markerless machine learning approach for controlled settings
    Harry Gill, James P. Charles, Robyn A. Grant, James Gardiner, Karl Thomas Bates, Charlotte Brassey · 2025 · Applied Animal Behaviour Science
  86. Spontaneous motor-behavior abnormalities in two Drosophila models of neurodevelopmental disorders
    David R. Andrew, Mariah E. Moe, Dailu Chen, Judith A. Tello, Rachel L. Doser, William E. Conner, JASWINDER KAUR GHUMAN, Linda L. Restifo · 2020 · Journal of Neurogenetics
  87. Neural Computation and Neuromodulation Underlying Social Behavior
    Joseph F. Bergan · 2015 · Integrative and Comparative Biology
  88. Distinguishing seemingly indistinguishable animals with computer vision
    Kristin M. Branson · 2014 · Nature Methods
  89. Aggression Is Induced by Resource Limitation in the Monarch Caterpillar
    Joseph Collie, Odelvys Granela, Elizabeth Brown, Alex C. Keene · 2020 · iScience
  90. Establishment of open-source semi-automated behavioral analysis system and quantification of the difference of sexual motivation between laboratory and wild strains
    Soma Tomihara, Yoshitaka Oka, Shinji Kanda · 2021 · Scientific Reports
  91. Video Recording and Analysis of Avian Movements and Behavior: Insights from Courtship Case Studies
    Judith Janisch, Clémentine Mitoyen, Elisa Perinot, Giovanni Spezie, Leonida Fusani, Cliodhna Quigley · 2021 · Integrative and Comparative Biology
  92. Using GFP Video to Track 3D Movement and Conditional Gene Expression in Free-Moving Flies
    Reza Dehestani Ardekani, Yichuan Michelle Huang, Prathamesh Sancheti, Ramunas Stanciauskas, Simon Tavaré, John Tower · 2012 · PLoS ONE
  93. Detecting wildlife in uncontrolled outdoor video using convolutional neural networks
    Connor Bowley, Alicia K. Andes, Susan N. Ellis‐Felege, Travis Desell · 2016 · IEEE International Conference on eScience
  94. An unsupervised learning approach for tracking mice in an enclosed area
    Jakob Unger, M. Mansour, Marcin Kopaczka, Nina Gronloh, Marc Spehr, Dorit Merhof · 2017 · BMC Bioinformatics
  95. Convergence and divergence in anti-predator displays: a novel approach to quantitative behavioural comparison in snakes
    Alison R. Davis Rabosky, Talia Y. Moore, Ciara M. Sánchez‐Paredes, Erin P. Westeen, Joanna G. Larson, Briana A. Sealey, Bailey A. Balinski · 2020 · Biological Journal of the Linnean Society
  96. An automatic system for recognizing fly courtship patterns via an image processing method
    Ching-Hsin Chen, Yu-Chiao Lin, Shenghao Wang, Tsung-Han Kuo, Hung‐Yin Tsai · 2024 · Behavioral and Brain Functions
  97. Image Tracking Study on Courtship Behavior of Drosophila
    Hung‐Yin Tsai, Yen-Wen Huang · 2012 · PLoS ONE
  98. What does thefruitlessgene tell us about nature vs. nurture in the sex life ofDrosophila?
    Daisuke Yamamoto, Soh Kohatsu · 2016 · Fly
  99. Wide-Angle, Monocular Head Tracking using Passive Markers
    Balázs Vágvölgyi, Ravikrishnan P. Jayakumar, Manu Sasidharan Madhav, James J. Knierim, Noah John Cowan · 2021 · Journal of Neuroscience Methods
  100. Automatic video-based analysis of animal behaviors
    Jialue Fan, Nan Jiang, Ying Nian Wu · 2010 · Proceedings - International Conference on Image Processing