Automated monitoring and analysis of social behavior in Drosophila

Dankert, Heiko, Wang, Liming, Hoopfer, Eric D, Anderson, David J, Perona, Pietro·2009·Nature Methods

DOI 10.1038/nmeth.1310

Cited by (378)

Items 201–300 of 378

Fluorescence Behavioral Imaging (FBI) Tracks Identity in Heterogeneous Groups of Drosophila
Pavan P Ramdya, Thomas Schaffter, Dario Floreano, Richard Benton · 2012 · PLoS ONE
Neurons Underlying Aggression-Like Actions That Are Shared by Both Males and Females in Drosophila
Liangyu Tao, Deven Ayembem, Victor J. Barranca, Vikas Bhandawat · 2024 · Journal of Neuroscience
Pupal behavior emerges from unstructured muscle activity in response to neuromodulation in Drosophila
Amicia D. Elliott, Adama J. Berndt, Matthew Houpert, Snehashis Roy, Robert L. Scott, Carson C. Chow, Hari Shroff, Benjamin H. White · 2021 · eLife
Wildlife@Home: Combining Crowd Sourcing and Volunteer Computing to Analyze Avian Nesting Video
Travis Desell, Robert David Bergman, Kyle Goehner, Ronald Arthur Marsh, Rebecca VanderClute, Susan N. Ellis‐Felege · 2013 · IEEE International Conference on eScience
STEFTR: A Hybrid Versatile Method for State Estimation and Feature Extraction From the Trajectory of Animal Behavior
Shuhei J. Yamazaki, Kazuya Ohara, Kentaro Ito, Nobuo Kokubun, Takuma Kitanishi, Daisuke Takaichi, Yasufumi Yamada, Yosuke Ikejiri, Fumie Hiramatsu, Kosuke Fujita et al. · 2019 · Frontiers in Neuroscience
Straightforward Assay for Quantification of Social Avoidance in Drosophila melanogaster
Robert W. Fernandez, Marat Nurilov, Omar Feliciano, Ian S. McDonald, Anne F. Simon · 2014 · Journal of Visualized Experiments
Quantitatively scoring behavior from video-recorded, long-lasting fish trajectories
Pere Martí-Puig, Moisès Serra-Serra, Andrea Campos‐Candela, Ramón Reig-Bolaño, Amalia Manjabacas, Miquel Palmer · 2018 · Environmental Modelling & Software
Social hierarchy is established and maintained with distinct acts of aggression in male Drosophila
Jasper C. Simon, Ulrike Heberlein · 2020 · Journal of Experimental Biology
Three-wavelength light control of freely moving Drosophila Melanogaster for less perturbation and efficient social-behavioral studies
Yen-Yin Lin, Ming-Chin Wu, Po-Yen Hsiao, Li‐An Chu, Mei-Mei Yang, Chien‐Chung Fu, Ann‐Shyn Chiang · 2015 · Biomedical Optics Express
A genetic screen for Drosophila social isolation mutants and analysis of sex pistol
Mark Eddison · 2021 · Scientific Reports
Genetics of Intraspecies Variation in Avoidance Behavior Induced by a Thermal Stimulus in Caenorhabditis elegans
Rajarshi Ghosh, Joshua S. Bloom, Aylia Mohammadi, Molly E. Schumer, Peter Andolfatto, William S. Ryu, Leonid Kruglyak · 2015 · Genetics
Effects of plant growth retardant daminozide (Alar) on neuromuscular co-ordination behavior in Drosophila melanogaster
Debasmita Das, Morium Begum, Pallab Paul, Ishita Dutta, Sayarneel Mandal, Papiya Ghosh, Sujay Ghosh · 2022 · Journal of Toxicology and Environmental Health
Neuroscience: The sting of social isolation
Jordan Grammer, Moriel Zelikowsky · 2022 · Current Biology
DVT: a high-throughput analysis pipeline for locomotion and social behavior in adult Drosophila melanogaster
Kai Mi, Yiqing Li, Yuhang Yang, Julie Secombe, Xingyin Liu · 2023 · Cell & Bioscience
OpenLabCluster: active learning based clustering and classification of animal behaviors based on kinematic body keypoints
Jingyuan Li, Moishe Keselman, Eli Shlizerman · 2025 · Frontiers in Systems Neuroscience
Social experience and pheromone receptor activity reprogram gene expression in sensory neurons
Bryson Deanhardt, Qichen Duan, Chengcheng Du, Charles Soeder, Alec Morlote, Deeya Garg, Aishani Saha, Corbin D. Jones, Pelin Volkan · 2023 · G3 Genes Genomes Genetics
Collective behavior quantification on human odor effects against female Aedes aegypti mosquitoes—Open source development
Abdul Halim Poh, Mahmoud Moghavvemi, Cherng Shii Leong, Yee Ling Lau, Alireza Safdari, Alexlee Apau, Faisal Rafiq Mahamd Adikan · 2017 · PLoS ONE
Loose social organisation of AB strain zebrafish groups in a two-patch environment
Axel Séguret, Bertrand Collignon, Léo Cazenille, Yohann Chemtob, José Halloy · 2019 · PLoS ONE
Degradation of arouser by endosomal microautophagy is essential for adaptation to starvation in Drosophila
Anne‐Claire Jacomin, Raksha Gohel, Zunoon Hussain, Ágnes Varga, Tamás Maruzs, Mark Eddison, Margaux Sica, Ashish Jain, Kevin G. Moffat, Terje Johansen et al. · 2020 · Life Science Alliance
Analysis of courtship behavior in closely related species of Drosophila virilis group: a new approach arises new questions
Varvara Vedenina, Tatyana Ivanova, Oleg Evgenievich Lazebny · 2012 · Journal of Insect Behavior
Automated Behavior Analysis Using a YOLO-Based Object Detection System
Kai Amino, Takashi Matsuo · 2022 · Neuromethods
A wireless, remotely operable and easily customizable robotic flower system
Kamiel Debeuckelaere, Dirk Janssens, Estefanía Serral, Tom Wenseleers, Hans Jacquemyn, María I. Pozo · 2024 · Methods in Ecology and Evolution
Genetic approaches in Drosophila for the study neurodevelopmental disorders
Zeynep Okray, Bassem A. Hassan · 2012 · Neuropharmacology
Methamphetamine causes anorexia in Drosophila melanogaster, exhausting metabolic reserves and contributing to mortality
Kent R. Walters, S. Indu Rupassara, R. J. Cody Markelz, Andrew D. B. Leakey, William M. Muir, Barry Robert Pittendrigh · 2012 · The Journal of Toxicological Sciences
The Angular Interval between the Direction of Progression and Body Orientation in Normal, Alcohol- and Cocaine Treated Fruit Flies
Anna Gakamsky, Efrat Oron, Dan Valente, Partha P. Mitra, Daniel Segal, Yoav Benjamini, Ilan Golani · 2013 · PLoS ONE
Social experience shapes fighting strategies in Drosophila
Can Gao, Mingze Ma, Jie Chen, Xiaoxiao Ji, Qionglin Peng, Yufeng Pan · 2024 · eLife
Sexually dimorphic activation of dopaminergic areas depends on affiliation during courtship and pair formation
Mai Iwasaki, Thomas M. Poulsen, Kotaro Oka, Neal A. Hessler · 2014 · Frontiers in Behavioral Neuroscience
Genetic architecture of collective behaviors in zebrafish
Wenlong Tang, Guoqiang Zhang, Fabrizio C. Serluca, Jingyao Li, Xiaorui Xiong, Matthew Coble, Tingwei Tsai, Zhuyun Li, Gregory J. Molind, Peixin Zhu et al. · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
Evolution of Emotion in Social Context
Eliza Bliss‐Moreau, Lisa A. Williams, Chloe L. Karaskiewicz · 2018 · Springer eBooks
Intraspecific predator interference promotes biodiversity in ecosystems
Ju Kang, Shijie Zhang, Yiyuan Niu, Fan Zhong, Xin Wang · 2024 · eLife
Effects of low-powered RF sweep between 0.01-20 GHz on female Aedes Aegypti mosquitoes: A collective behaviour analysis
Abdul Halim Poh, Mahmoud Moghavvemi, Mohammad Mahdi Shafiei, Cherng Shii Leong, Yee Ling Lau, Faisal Rafiq Mahamd Adikan, Majid Bakhtiari, Mahmood Ameen Abdulla Hassan · 2017 · PLoS ONE
CNN-Based Background Subtraction for Long-Term In-Vial FIM Imaging
Aaron Scherzinger, Sören Klemm, Dimitri Berh, Xiaoyi Jiang · 2017 · Lecture notes in computer science
Molecular Genetics of Insect Behavior
Marjorie A. Hoy · 2013 · Elsevier eBooks
Automated Tracking of Drosophila Specimens
Rubén Chao, Germán Macía-Vázquez, Eduardo Zalama, Jaime Gómez‐García‐Bermejo, José R. Perán · 2015 · Sensors
Evolutionary basis of male same-sex sexual behavior by multiple pheromone switches in Drosophila
Youcef Ouadah, Thomas H. Naragon, Hayley Marie Smihula, Emily L. Behrman, Mohammed A. Khallaf, Yun Ding, David L. Stern, Joseph Parker, David J. Anderson · 2026 · Current Biology
An FIM-Based Long-Term In-Vial Monitoring System for Drosophila Larvae
Dimitri Berh, Benjamin Risse, Tim Michels, Nils Otto, Xiaoyi Jiang, Christian Klämbt · 2016 · IEEE Transactions on Biomedical Engineering
A Novel Lenticular Arena to Quantify Locomotor Competence in Walking Fruit Flies
NALONG TOM MEKDARA, JOY JUNE GOTO, Songita A. Choudhury, P J Mekdara, NICHOLAS YINGST, YU CAO, OTTO BERG, Ulrike K. Müller · 2012 · Journal of Experimental Zoology Part A Ecological Genetics and Physiology
Frequency‐specific modification of locomotor components by the white gene in Drosophila melanogaster adult flies
Chengfeng Xiao, Shuang Qiu · 2020 · Genes Brain & Behavior
3D trajectory estimation of simulated fruit flies
Junli Tao, Benjamin Risse, Xiaoyi Jiang, Reinhard Klette · 2012 · International Conference on Image and Vision Computing New Zealand (IVCNZ)
Comparison of two 3D tracking paradigms for freely flying insects
Benjamin Risse, Dimitri Berh, Junli Tao, Xiaoyi Jiang, Reinhard Klette, Christian Klämbt · 2013 · EURASIP Journal on Image and Video Processing
Fighting Flies: Quantifying and Analyzing Drosophila Aggression
Maria P. Fernandez, Séverine Trannoy, Sarah J. Certel · 2023 · Cold Spring Harbor Protocols
DANCE provides an open-source and low-cost approach to quantify aggression and courtship in Drosophila
R Sai Prathap Yadav, Paulami Dey, Faizah Ansari, Tanvi Kottat, P Pallavi Prabhu, Manohar Vasam, Shrinivas Ayyangar, Swathi Bhaskar S, Krishnananda Prabhu, Monalisa Ghosh et al. · 2025 · eLife
Small-Molecule Screening Using Drosophila Models of Human Neurological Disorders
Mickaël Poidevin, Feiran Zhang, Peng Jin · 2014 · Methods in molecular biology
Tracking the 3D position and orientation of flying swarms with learned kinematic pattern using LSTM network
Shuo Hong Wang, Hai Feng Su, Xi En Cheng, Ye Liu, Aike Quo, Yan Qiu Chen · 2017 · IEEE International Conference on Multimedia and Expo (ICME)
Ideal Mechanization: Exploring the Machine Metaphor through Theory and Performance
Amy LaViers · 2019 · Arts
Long 3D-POT: A Long-Term 3D Drosophila-Tracking Method for Position and Orientation with Self-Attention Weighted Particle Filters
Chengkai Yin, Xiang Liu, Xing Zhang, Shuohong Wang, Haifeng Su · 2024 · Applied Sciences
A two-fly tracker that solves occlusions by dynamic programming: computational analysis of Drosophila courtship behaviour
Christian Schusterreiter, Wilfried Grossmann · 2013 · EURASIP Journal on Image and Video Processing
Behavior Recognition in Mouse Videos using Contextual Features Encoded by Spatial-temporal Stacked Fisher Vectors
Zheheng Jiang, Danny Crookes, Brian Desmond Green, Shengping Zhang, Huiyu Zhou · 2017 · International Conference on Pattern Recognition Applications and Methods
Counts of mechanical, external configurations compared to computational, internal configurations in natural and artificial systems
Amy LaViers · 2019 · PLoS ONE
An information-theory approach to geometry for animal groups
Christoph D. Dahl, Elodie Ferrando, Klaus Zuberbühler · 2020 · Animal Cognition
Targeted Manipulation of Neuronal Activity in Behaving Adult Flies
Stefanie Hampel, Andrew Michael Seeds · 2017 · Springer eBooks
cAMP signaling mediates behavioral flexibility and consolidation of social status in Drosophila aggression
Nitin Singh Chouhan, Krithika Mohan, Aurnab Ghose · 2017 · Journal of Experimental Biology
Random Walk Revisited: Quantification and Comparative Analysis of Drosophila Walking Trajectories
Kuo-Ting Tsai, Ya-Hui Chou · 2019 · iScience
Behaviour: Flies on film
Lizzie Buchen · 2009 · Nature
Evolution of Emotion in Social Context
Eliza Bliss‐Moreau, Lisa A. Williams, Chloe L. Karaskiewicz · 2021 · Springer eBooks
Optimal Data Distributions in Machine Learning
González Palacios, Carlos Roberto · 2015 · CaltechTHESIS (California Institute of Technology)
The MacqD deep-learning-based model for automatic detection of socially housed laboratory macaques
Genevieve Jiawei Moat, Maxime Gaudet-Trafit, Julian Paul, Jaume Bacardit, Suliann Ben Hamed, Colline Poirier · 2025 · Scientific Reports
A Short Review of Some Aspects of Computational Neuroethology
Manuel Graña, Javier de Lope · 2019 · Lecture notes in computer science
Flash communication pattern analysis of fireflies based on computer vision
Thanaban Tathawee, Wandee Wattanachaiyingcharoen, Anantachai Suwannakom, Surisak Prasarnpun · 2020 · International Journal of Advances in Intelligent Informatics
Sexual Selection Increases Male Behavioral Consistency in Drosophila melanogaster
Jack A. Brand, Upama Aich, Winston K. W. Yee, Bob B. M. Wong, Damian K. Dowling · 2024 · The American Naturalist
Comparative Perspectives on Neuropeptide Function and Social Isolation
Kenta Asahina, Moriel Zelikowsky · 2025 · Biological Psychiatry
Instrumentation for monitoring animal movements
Tomasz Kutrowski, T. Meydan, John A. Barnes, Noor Aldoumani, Jonathan Thor Erichsen · 2014 · Proceedings of IEEE Sensors/Proceedings of IEEE Sensors ...
Molecular Genetics of Insect Behavior
Marjorie A. Hoy · 2019 · Elsevier eBooks
Olfactory Behaviors Assayed by Computer Tracking Of Drosophila in a Four-quadrant Olfactometer
Chun‐Chieh Lin, Olena Riabinina, Christopher J. Potter · 2016 · Journal of Visualized Experiments
Courtship Behavior Analysis in Three Sibling Species of the Drosophila virilis Group
Elena G. Belkina, Varvara Vedenina, Svetlana Yu. Sorokina, Oleg Evgenievich Lazebny · 2018 · Entomological Review
The role of acoustic signals in courtship behavior of Drosophila virilis
Elena G. Belkina, Oleg Evgenievich Lazebny, Varvara Vedenina · 2016 · Biology Bulletin
Quantitative High‐Content Screening‐Based Drug Discovery against Helmintic Diseases
Rahul Singh · 2012 · Wiley eBooks
RAD-Behavior (Recombining Atomized, Discretized, Behavior): A new framework for the quantitative analysis of behavioral execution
Russell A. Ligon, Edwin Scholes, Michael J. Sheehan · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
Markerless tracking of bumblebee foraging allows for new metrics of bee behavior and demonstrations of increased foraging efficiency with experience
Reed C. Warburton, Patricia L. Jones · 2023 · Apidologie
Disentangling nonrandom assortment, indirect effects, and joint plasticity as causes of phenotypic (dis)similarity between social partners
Barbara Class, Yimen G. Araya‐Ajoy, Niels Jeroen Dingemanse, Ned A. Dochtermann, Jordan Scott Martin, María Moirón, David F. Westneat · 2025 · Journal of Evolutionary Biology
Three‐dimensional‐based landmark tracker employing a superpixels method for neuroscience, biomechanics, and biology studies
Omid Haji Maghsoudi, Annie Vahedipour, Andrew J. Spence · 2019 · International Journal of Imaging Systems and Technology
Statistical signature of subtle behavioral changes in large-scale assays
Alexandre Blanc, François Laurent, Alex Barbier–Chebbah, Hugues Van Assel, Ben Cocanougher, Benjamin M.W. Jones, Peter Hague, Marta Zlatic, Rayan Chikhi, Christian L. Vestergaard et al. · 2025 · PLoS Computational Biology
Mechanisms of Variability Underlying Odor-Guided Locomotion
L. Y. Tao, Vikas Bhandawat · 2022 · Frontiers in Behavioral Neuroscience
PoseR: a deep learning toolbox for classifying animal behaviour
Mullen, Pierce N., Bowlby, Beatrice, Armstrong, Holly C., Gray, Angus, Zwart, Maarten F. · 2026 · Open Biology
Estimating Orientation of Flying Fruit Flies
Xi En Cheng, Shuo Hong Wang, Zhiming Qian, Yan Qiu Chen · 2015 · PLoS ONE
3D Transformation Matrix Calculation and Pixel Intensity Normalization for the Dual Focus Tracking System
Kenneth Lee Sutherland, Toshiyuki Hamada, Masayori Ishikawa, Naoki Miyamoto, Masahiro Mizuta, Hiroyuki Date, Hiroki Shirato · 2019 · Journal of Medical and Biological Engineering
Study of Animal Behavior and Machine Learning
Shyamasree Ghosh, Rathi Dasgupta · 2022 · Springer eBooks
PRESENCIA Y REALIDAD DE LA PSICOLOGÍA POLÍTICA FRANCESA
Alexandre Dorna · 1998 · Psicología Política
The Best Laid Plans: Analyzing Courtship Defects inDrosophila
Stephen F. Goodwin, Kevin M.C. O’Dell · 2012 · Cold Spring Harbor Protocols
Automated Tracking of Primate Behavior
Benjamin Y. Hayden, Hyun Soo Park, Jan Zimmermann · 2021 · arXiv (Cornell University)
Behavioral Studies in Drosophila Models of Human Diseases
Yi Zhu, Stanislav Lazopulo, Sheyum Syed, Rong Grace Zhai · 2020 · Elsevier eBooks
Author response: Simple Methods to Acutely Measure Multiple Timing Metrics among Sexual Repertoire of Male Drosophila
Yutong Song, Hongyu Miao, Dongyu Sun, Xiao Liu, Fan Jiang, Xuejiao Yang, Woo Jae Kim · 2026 · eLife
Drosophila genotypes can be predicted from their exploration locomotive trajectories using supervised machine learning
Minh Nguyen, Gregg Roman, Benjamin Soibam · 2023 · Behavioural Processes
Paradigms for Behavioral Assessment in Drosophila Model of Autism Spectrum Disorder
Sarani Dey, Papiya Mondal, Shreya Mandal, Suman Sasmal, Nilasha Chakraborty, Abhijit Das · 2024 · Journal of Visualized Experiments
Genetic Control of Social Experience‐Dependent Changes in Locomotor Activity in Drosophila melanogaster Males
Julia V. Bragina, Anna A. Goncharova, Natalia G. Besedina, Larisa V. Danilenkova, Камышева Елена Аркадьевна, Н. Г. Камышев · 2025 · Archives of Insect Biochemistry and Physiology
Sex‐Specific Effects of Social Environment on Behaviour and Their Correlations in Drosophila melanogaster
Erin L. Macartney, Samantha Burke, Patrice Pottier, Zina Hamoudi, Chloe Hart, Radiah Ahmed, Yong Qi Lin, G. Gregory Neely, Szymon Marian Drobniak, Shinichi Nakagawa · 2025 · Ecology and Evolution
Cross-Species Social Experience Suppresses Aggression in Drosophila
Junlong Wang, Qiantao Lv, Yi Yang, Jing Ning, Jiayin Guan, Dandan Chen, Ying Zhen, Yi Sun · 2026 · Neuroscience Bulletin
Unbiased analysis of mouse social behaviour using unsupervised machine learning
Oscar Bauer, Anne‐Marie Le Sourd, Giacomo Nardi, Thomas Bourgeron, Jean‐Christophe Olivo‐Marín, Elodie Ey, Fabrice de Chaumont · 2017 · IEEE International Symposium on Biomedical Imaging (ISBI)
The Effect of Chromosomes on Courtship Behavior in Sibling Species of the Drosophila virilis Group
Elena G. Belkina, Д. Г. Селезнев, Svetlana Yu. Sorokina, А. М. Куликов, Oleg Evgenievich Lazebny · 2023 · Insects
Review on Social Behavior Analysis of Laboratory Animals: From Methodologies to Applications
Ziping Jiang, Paul Louis Chazot, Richard Jiang · 2022 · CRC Press eBooks
Inactivity periods and postural change speed can explain atypical postural change patterns of Caenorhabditis elegans mutants
Tsukasa Fukunaga, Wataru Iwasaki · 2017 · BMC Bioinformatics
Virtual Reality and Tracking the Mating Behavior of Fruit Flies: a Machine Learning Approach
M. Hamed Mozaffari, Shuangyue Wen, Won‐Sook Lee · 2018 · IEEE International Conference on Computational Intelligence and Virtual Environments for Measurement Systems and Applications (CIVEMSA)
Automated phenotyping of mouse social behavior
Nicholas Edelman · 2011 · DSpace@MIT (Massachusetts Institute of Technology)
Genes and Environments inDrosophilaSex
David J. Hosken, Amanda J. Bretman, Stephen F. Goodwin, C. Ruth Archer · 2019 · Wiley eBooks
Intraspecific predator interference promotes biodiversity in ecosystems
Kang, Ju, Shijie Zhang, Niu, Yiyuan, Zhong, Fan, Wang, Xin · 2021 · arXiv (Cornell University)
Quantifying between-individual variation using high-throughput phenotyping of behavioural traits in the fruit fly (Drosophila melanogaster)
Erin L. Macartney, Patrice Pottier, Samantha Burke, Szymon Marian Drobniak, Shinichi Nakagawa · 2022
Social Experience Alters Behaviors by Reprogramming the Fruitless Pathway and Circadian State in Drosophila
Chengcheng Du, Sumie Okuwa, Lanling Jia, Marta Rozados Barreiro, Shayna Scott, Jesús Emiliano Sotelo Fonseca, Yuta Mabuchi, Shania Appadoo, Luis Garcia, Stephanie Rohrbach et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
Simple Methods to Acutely Measure Multiple Timing Metrics among Sexual Repertoire of Male Drosophila
Yutong Song, Dongyu Sun, Xiao Liu, Fan Jiang, Xuejiao Yang, Woo Jae Kim · 2026 · eLife
Learning Keypoints for Multi-Agent Behavior Analysis using Self-Supervision
Daniel Khalil, Christina Liu, Pietro Perona, Jennifer J. Sun, Markus Marks · 2025 · IEEE Winter Conference on Applications of Computer Vision
Neuromodulation of conflicts and hierarchy in insects
Kenta Asahina · 2025 · Elsevier eBooks