The DOI matches its Crossref record; 4 of the 4 references it cites were found in a registry or an index.
TU-tagging: cell type–specific RNA isolation from intact complex tissues
Open accessAbstract
We found that the combination of spatially restricted uracil phosphoribosyltransferase (UPRT) expression with 4-thiouracil delivery can be used to label and purify cell type–specific RNA from intact complex tissues in Drosophila melanogaster. This method is useful for isolating RNA from cell types that are difficult to isolate by dissection or dissociation methods and should work in many organisms, including mammals and other vertebrates.
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Cites
RNA-Seq: a revolutionary tool for transcriptomics
Wang, Z., Gerstein, M., & Snyder, M. (2009) · Nature Reviews Genetics · doi:10.1038/nrg2484 · Cited by 13,174
A translational profiling approach for the molecular characterization of CNS cell types
Heiman, M., Schaefer, A., Gong, S., Peterson, J. D., Day, M., Ramsey, K. E., Suárez-Fariñas, M., Schwarz, C., Stephan, D. A., Surmeier, D. J., et al. (2008) · Cell · doi:10.1016/j.cell.2008.10.028 · Cited by 1,134
Application of a translational profiling approach for the comparative analysis of CNS cell types
Doyle, J. P., Dougherty, J. D., Heiman, M., Schmidt, E. F., Stevens, T. R., Ma, G., Bupp, S., Shrestha, P., Shah, R. D., Doughty, M. L., et al. (2008) · Cell · doi:10.1016/j.cell.2008.10.029 · Cited by 912
Probing the transcriptome of neuronal cell types
Nelson, S. B., Hempel, C., & Sugino, K. (2006) · Current Opinion in Neurobiology · doi:10.1016/j.conb.2006.08.006 · Cited by 92
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Thiol-linked alkylation for the metabolic sequencing of RNA
Herzog, V. A., Reichholf, B., Neumann, T., Rescheneder, P., Bhat, P., Burkard, T. R., Wlotzka, W., von Haeseler, A., Zuber, J., & Ameres, S. L. (2017) · doi:10.1101/177642 · Cited by 622
Thiol-linked alkylation of RNA to assess expression dynamics
Herzog, V. A., Reichholf, B., Neumann, T., Rescheneder, P., Bhat, P., Burkard, T. R., Wlotzka, W., von Haeseler, A., Zuber, J., & Ameres, S. L. (2017) · Nature Methods · doi:10.1038/nmeth.4435 · Cited by 622
Inagaki, H. K., Ben-Tabou de-Leon, S., Wong, A. M., Jagadish, S., Ishimoto, H., Barnea, G., Kitamoto, T., Axel, R., & Anderson, D. J. (2012) · Cell · doi:10.1016/j.cell.2011.12.022 · Cited by 325
CLIP and complementary methods
Hafner, M., Katsantoni, M., Köster, T., Marks, J., Mukherjee, J., Staiger, D., Ule, J., & Zavolan, M. (2021) · Nature Reviews Methods Primers · doi:10.1038/s43586-021-00018-1 · Cited by 365
Widespread disruption of host transcription termination in HSV-1 infection
Rutkowski, A. J., Erhard, F., L’Hernault, A., Bonfert, T., Schilhabel, M., Crump, C., Rosenstiel, P., Efstathiou, S., Zimmer, R., Friedel, C. C., et al. (2015) · Nature Communications · doi:10.1038/ncomms8126 · Cited by 275
Southall, T. D., Gold, K. S., Egger, B., Davidson, C. M., Caygill, E. E., Marshall, O. J., & Brand, A. H. (2013) · Developmental Cell · doi:10.1016/j.devcel.2013.05.020 · Cited by 256
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Friedel, C. C., Dölken, L., Ruzsics, Z., Koszinowski, U. H., & Zimmer, R. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkp542 · Cited by 230
The genetic and biochemical determinants of mRNA degradation rates in mammals
Agarwal, V., & Kelley, D. R. (2022) · Genome Biology · doi:10.1186/s13059-022-02811-x · Cited by 155
Steiner, F. A., Talbert, P. B., Kasinathan, S., Deal, R. B., & Henikoff, S. (2012) · Genome Research · doi:10.1101/gr.131748.111 · Cited by 123
Time-resolved single-cell RNA-seq using metabolic RNA labelling
Erhard, F., Saliba, A.-E., Lusser, A., Toussaint, C., Hennig, T., Prusty, B. K., Kirschenbaum, D., Abadie, K., Miska, E. A., Friedel, C. C., et al. (2022) · Nature Reviews Methods Primers · doi:10.1038/s43586-022-00157-z · Cited by 73
Xu, Z., Sziraki, A., Lee, J., Zhou, W., & Cao, J. (2024) · Nature Biotechnology · doi:10.1038/s41587-023-01948-9 · Cited by 52
Metadata
- Authors
- Miller, M. R., Robinson, K. J., Cleary, M. D., & Doe, C. Q.
- Venue
- Nature Methods
- Published
- 2009-05-10
- Volume
- 6
- Issue
- 6
- Pages
- 439-441
- ISSN
- 1548-7091 (ISSN-L)
- 1548-7105
- OpenAlex
- W2073644539
- Cited by
- 176
- References
- 4
- FWCI
- 3.96
- Type
- journal article
- Language
- en
- Open access
- green
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
