Direct detection of DNA methylation during single-molecule, real-time sequencing

Flusberg, Benjamin A, Webster, Dale R, Lee, Jessica H, Travers, Kevin J, Olivares, Eric C, Clark, Tyson A, Korlach, Jonas, Turner, Stephen W·2010·Nature Methods

Cited by (1,000)

Items 501–600 of 1,000

  1. Production and сharacterization of the exopolysaccharide from strain Paenibacillus polymyxa 2020
    Elena V. Liyaskina, Nadezhda A. Rakova, Alevtina A. Kitykina, Valentina V. Rusyaeva, Filip V. Toukach, Alexey I. Fomenkov, Saulius Vainauskas, Richard J. Roberts, В. В. Ревин · 2021 · PLoS ONE
  2. Opportunities in the microbial valorization of sugar industrial organic waste to biodegradable smart food packaging materials
    Sandhya Jayasekara, Lakshika Dissanayake, Lahiru Niroshan Jayakody · 2022 · International Journal of Food Microbiology
  3. Direct transposition of native DNA for sensitive multimodal single-molecule sequencing
    Arjun Scott Nanda, Ke Wu, Iryna Irkliyenko, Brian Woo, Megan S Ostrowski, Andrew Scott Clugston, Leanne C. Sayles, Lingru Xu, Ansuman T. Satpathy, Hao Gia Nguyen et al. · 2024 · Nature Genetics
  4. 5‐Hydroxymethylcytosin, die sechste Base des Genoms
    Martin Münzel, Daniel Globisch, Thomas Carell · 2011 · Angewandte Chemie
  5. Myxosporea (Myxozoa, Cnidaria) Lack DNA Cytosine Methylation
    Ryan Kyger, Agusto Luzuriaga-Neira, Thomas S. Layman, Tatiana Orli Milkewitz Sandberg, Devika Singh, Dorothée Huchon, Sateesh Peri, Stephen Douglas Atkinson, Jerri Lee Bartholomew, Soojin V. Yi et al. · 2020 · Molecular Biology and Evolution
  6. DeepMP: a deep learning tool to detect DNA base modifications on Nanopore sequencing data
    Jose Bonet, Mandi Chen, Marc Dabad, Simon Charles Heath, Abel González-Pérez, Núria López-Bigas, Jens Lagergren · 2021 · Bioinformatics
  7. Simultaneous sequencing of oxidized methylcytosines produced by TET/JBP dioxygenases in Coprinopsis cinerea
    Lukas Chávez, Yun Huang, Khai Luong, Suneet Agarwal, Lakshminarayan M. Iyer, William A. Pastor, Virginia K. Hench, Sylvia A. Frazier‐Bowers, Evgenia Korol, Shuo Liu et al. · 2014 · Proceedings of the National Academy of Sciences
  8. BayMeth: improved DNA methylation quantification for affinity capture sequencing data using a flexible Bayesian approach
    Andrea Riebler, Mirco Menigatti, Jenny Z. Song, Aaron L. Statham, Clare Stirzaker, Nadiya Mahmud, Charles A. Mein, Susan J. Clark, Mark D. Robinson · 2014 · Genome biology
  9. Transgenerational Epigenetic Inheritance Under Environmental Stress by Genome-Wide DNA Methylation Profiling in Cyanobacterium
    Lang Hu, Peng Xiao, Yongguang Jiang, Mingjie Dong, Zixi Chen, Hui Li, Zhangli Hu, Anping Lei, Jiangxin Wang · 2018 · Frontiers in Microbiology
  10. Decoding the microbial universe with metagenomics: a brief insight
    Hiral G. Chaudhari, Shobha Prajapati, Zuhour Hussein Wardah, Gopalkumar G. Raol, Vimalkumar Prajapati, Rajesh Kanjibhai Patel, Ali Abdullah Shati, Mohammad Yahya Alfaifi, Serag Eldin I. Elbehairi, Riyaz Zafar Sayyed · 2023 · Frontiers in Genetics
  11. DNA methylation in breast cancer: early detection and biomarker discovery through current and emerging approaches
    Melissa Hum, Ann S. G. Lee · 2025 · Journal of Translational Medicine
  12. Massively parallel sequencing: the new frontier of hematologic genomics
    Jill M. Johnsen, Deborah A. Nickerson, Alex P. Reiner · 2013 · Blood
  13. Complex Interplay among DNA Modification, Noncoding RNA Expression and Protein-Coding RNA Expression in Salvia miltiorrhiza Chloroplast Genome
    Haimei Chen, Jianhui Zhang, George Yuan, Chang Liu · 2014 · PLoS ONE
  14. The Hunt for 5-Hydroxymethylcytosine: The Sixth Base
    Chun‐Xiao Song, Chuan He · 2011 · Epigenomics
  15. A Type I Restriction-Modification System Associated with Enterococcus faecium Subspecies Separation
    Wenwen Huo, Hannah M. Adams, Cristian Trejo, Rohit Badia, Kelli L. Palmer · 2018 · Applied and Environmental Microbiology
  16. Electrochemiluminescence biosensor for DNA hydroxymethylation detection based on enzyme-catalytic covalent bonding reaction of –CH2OH and thiol functionalized Fe3O4 magnetic beads
    Chengji Sui, Huanshun Yin, Lingsong Wang, Yunlei Zhou, Shiyun Ai · 2019 · Biosensors and Bioelectronics
  17. Genomic Stability and Genetic Defense Systems in Dolosigranulum pigrum , a Candidate Beneficial Bacterium from the Human Microbiome
    Stephany Flores Ramos, Silvio D. Brugger, Isabel F. Escapa, Chelsey A. Skeete, Sean L. Cotton, Sara M. Eslami, Wei Gao, Lindsey Bomar, Tommy H. Tran, Dakota S. Jones et al. · 2021 · mSystems
  18. Feasible strategies for studying the involvement of DNA methylation and histone acetylation in the stress-induced formation of quality-related metabolites in tea (Camellia sinensis)
    Jie Yang, Dachuan Gu, Shuhua Wu, Xiaochen Zhou, Jiaming Chen, Yinyin Liao, Lanting Zeng, Ziyin Yang · 2021 · Horticulture Research
  19. Electrochemical biosensor for detection of DNA hydroxymethylation based on glycosylation and alkaline phosphatase catalytic signal amplification
    Yunlei Zhou, Zhiqing Yang, Xue Li, Yue Wang, Huanshun Yin, Shiyun Ai · 2015 · Electrochimica Acta
  20. Evaluation of Genome Sequencing Quality in Selected Plant Species Using Expressed Sequence Tags
    Lingfei Shangguan, Jian Han, Emrul Kayesh, Xin Sun, Changqing Zhang, Tariq Pervaiz, Xicheng Wen, Jinggui Fang · 2013 · PLoS ONE
  21. RADAR-seq: A RAre DAmage and Repair sequencing method for detecting DNA damage on a genome-wide scale
    Zatopek, Kelly M., Potapov, Vladimir, Maduzia, Lisa L., Alpaslan, Ece, Chen, Lixin, Evans, Thomas C., Ong, Jennifer L., Ettwiller, Laurence M., Gardner, Andrew F. · 2019 · DNA Repair
  22. Downregulation of transposable elements extends lifespan in Caenorhabditis elegans
    Ádám Sturm, Éva Saskői, Bernadette Hotzi, Anna Tarnóci, János Barna, Ferenc Bodnár, Himani Sharma, Attila L. Kovács, Eszter EA Ari, Nóra Weinhardt et al. · 2023 · Nature Communications
  23. tRNA biology in the omics era: Stress signalling dynamics and cancer progression
    Andrea Orioli · 2016 · BioEssays
  24. An Overview of Cultural, Molecular and Metagenomic Techniques in Description of Microbial Diversity
    Uwem Okon Edet, S. P. Antai, A. A. Brooks, Atim Asitok, Osim Enya, F Japhet · 2017 · Journal of Advances in Microbiology
  25. A protein architecture guided screen for modification dependent restriction endonucleases
    Thomas Lutz, Kiersten Flodman, Alyssa Copelas, H. Czapinska, Megumu Yamada Mabuchi, Alexey I. Fomenkov, Xinyi He, Matthias Bochtler, Shuang-yong Xu · 2019 · Nucleic Acids Research
  26. Accurate prediction of DNA N4-methylcytosine sites via boost-learning various types of sequence features
    Zhixun Zhao, Xiaocai Zhang, Fang Chen, Liang Fang, Jinyan Li · 2020 · BMC Genomics
  27. A primer on metagenomics and next‐generation sequencing in fish gut microbiome research
    Tina Kollannoor Johny, Rinu Madhu Puthusseri, Sarita Ganapathy Bhat · 2021 · Aquaculture Research
  28. High contiguity de novo genome assembly and DNA modification analyses for the fungus fly, Sciara coprophila, using single-molecule sequencing
    John M. Urban, Michael S. Foulk, Jacob E. Bliss, C. Michelle Coleman, Nanyan Lu, Reza Mazloom, Susan Jayne Brown, Allan C. Spradling, Susan A. Gerbi · 2021 · BMC Genomics
  29. Hyb4mC: a hybrid DNA2vec-based model for DNA N4-methylcytosine sites prediction
    Ying Liang, Yanan Wu, Zequn Zhang, Niannian Liu, Jun Peng, Jianjun Tang · 2022 · BMC Bioinformatics
  30. A simple, low-cost, and rapid device for a DNA methylation-specific amplification/detection system using a flexible plastic and silicon complex
    Tae Yoon Lee, Yong Moon Shin, Mi Kyoung Park · 2014 · Lab on a Chip
  31. Atomic force microscopy on chromosomes, chromatin and DNA: A review
    Wouter H. J. Kalle, Pádraig Strappe · 2012 · Micron
  32. 5-Methylcytosine and Its Derivatives
    Bi‐Feng Yuan · 2014 · Advances in clinical chemistry
  33. Integrating Epigenomics into the Understanding of Biomedical Insight
    Yixing Han, Ximiao He · 2016 · Bioinformatics and Biology Insights
  34. Analyzing AbrB-Knockout Effects through Genome and Transcriptome Sequencing of Bacillus licheniformis DW2
    Cheng-Cheng Shu, Dong Wang, Jing Guo, Jia‐Ming Song, Shouwen Chen, Ling‐Ling Chen, Junxiang Gao · 2018 · Frontiers in Microbiology
  35. Study of the whole genome, methylome and transcriptome of Cordyceps militaris
    Yujiao Chen, Yuqian Wu, Li Liu, Jianhua Feng, Tiancheng Zhang, Sheng Qin, Xingyu Zhao, Chaoxia Wang, Dongmei Li, Wei Han et al. · 2019 · Scientific Reports
  36. Single-Molecule Fluorescence Imaging for Ultrasensitive DNA Methyltransferase Activity Measurement and Inhibitor Screening
    Hongding Zhang, Kun Zhang, Yuanyuan Yao, Yujie Liu, Ji Ji, Xuedong Huang, Jianwei Liu, Baohong Liu · 2019 · Analytical Chemistry
  37. Application of third-generation sequencing in cancer research
    Zhiao Chen, Xianghuo He · 2021 · Medical Review
  38. qDNAmod: a statistical model-based tool to reveal intercellular heterogeneity of DNA modification from SMRT sequencing data
    Zhixing Feng, Jing Li, Jing-Ren Zhang, Xuegong Zhang · 2014 · Nucleic Acids Research
  39. Comparative Genomics Reveals the Diversity of Restriction-Modification Systems and DNA Methylation Sites in Listeria monocytogenes
    Poyin Chen, Henk C. den Bakker, Jonas Korlach, Nguyet T. Kong, Dylan Bobby Storey, Ellen E. Paxinos, Meredith Ashby, Tyson A. Clark, Khai Luong, Martin Wiedmann et al. · 2016 · Applied and Environmental Microbiology
  40. Single-Molecule Sequencing (PacBio) of the Staphylococcus capitis NRCS-A Clone Reveals the Basis of Multidrug Resistance and Adaptation to the Neonatal Intensive Care Unit Environment
    Patrícia Martins-Simões, Hajar Lemriss, Yann Dumont, Sanaâ Lemriss, Jean‐Philippe Rasigade, Sophie Trouillet‐Assant, Azeddine Ibrahimi, Saâd El Kabbaj, Marine Butin, Frederic J. Laurent · 2016 · Frontiers in Microbiology
  41. LW-FQZip 2: a parallelized reference-based compression of FASTQ files
    Zhi-An Huang, Zhenkun Wen, Qingjin Deng, Ying Chu, Yiwen Sun, Zexuan Zhu · 2017 · BMC Bioinformatics
  42. Double and single stranded detection of 5-methylcytosine and 5-hydroxymethylcytosine with nanopore sequencing
    Dominic Oliver Halliwell, Floris Honig, Stefan Bagby, Sandipan Roy, Adele Murrell · 2025 · Communications Biology
  43. Data quality of whole genome bisulfite sequencing on Illumina platforms
    Amanda Raine, Ulrika Liljedahl, Jessica Nordlund · 2018 · PLoS ONE
  44. Comparative Analysis of Whole-Genome and Methylome Profiles of a Smooth and a Rough Mycobacterium abscessus Clinical Strain
    Chiranjibi Chhotaray, Shuai Wang, Yaoju Tan, Amjad Ali, Muhammad Shehroz, Cuiting Fang, Yang Liu, Zhili Lu, Xingshan Cai, H. M. Adnan Hameed et al. · 2019 · G3 Genes Genomes Genetics
  45. Analysis of a phase-variable restriction modification system of the human gut symbiont Bacteroides fragilis
    Nadav Ben-Assa, Michael J. Coyne, Alexey I. Fomenkov, Jonathan Livny, William Paul Robins, Maite Muniesa, Vincent J. Carey, Shaqed Carasso, Tal Gefen, Juan T. Jofre et al. · 2020 · Nucleic Acids Research
  46. Research Progress in Predicting DNA Methylation Modifications and the Relation with Human Diseases
    Chunyan Ao, Lin Gao, Liang Yu · 2021 · Current Medicinal Chemistry
  47. Chemoenzymatic labeling of DNA methylation patterns for single-molecule epigenetic mapping
    Tslil Gabrieli, Yael Michaeli, Sigal Avraham, Dmitry Torchinsky, Sapir Margalit, Leonie Schütz, Matyas Juhasz, Ceyda Çoruh, Nissim Arbib, Zhaohui Sunny Zhou et al. · 2022 · Nucleic Acids Research
  48. Active human nucleolar organizer regions are interspersed with inactive rDNA repeats in normal and tumor cells
    Zillner, Karina, Komatsu, Jun, Filarsky, Katharina, Kalepu, Rajakiran, Bensimon, Aaron, Németh, Attila · 2015 · Epigenomics
  49. 5-Hydroxymethylcytosine: Far Beyond the Intermediate of DNA Demethylation
    Kaixi Zheng, Zhengbing Lyu, Jianqing Chen, Guodong Chen · 2024 · International Journal of Molecular Sciences
  50. A review on the applications of Transformer-based language models for nucleotide sequence analysis
    Nimisha Ghosh, Daniele Santoni, Indrajit Saha, Giovanni Felici · 2025 · Computational and Structural Biotechnology Journal
  51. Future Challenges in Single-Molecule Fluorescence and Laser Trap Approaches to Studies of Molecular Motors
    Mary Williard Elting, James A. Spudich · 2012 · Developmental Cell
  52. Lineage-Specific Methyltransferases Define the Methylome of the Globally Disseminated Escherichia coli ST131 Clone
    Brian M. Forde, Minh‐Duy Phan, Jayde A. Gawthorne, Melinda M. Ashcroft, Mitchell J. Stanton-Cook, Sohinee Sarkar, Kate M. Peters, Kok‐Gan Chan, Teik Min Chong, Wai‐Fong Yin et al. · 2015 · mBio
  53. Bypassing the Restriction System To Improve Transformation of Staphylococcus epidermidis
    Stephen K. Costa, Niles P. Donegan, Anna Corvaglia, Patrice François, Ambrose L. Cheung · 2017 · Journal of Bacteriology
  54. 4mC-RF: Improving the prediction of 4mC sites using composition and position relative features and statistical moment
    Wajdi Alghamdi, Ebraheem O. Alzahrani, Malik Zaka Ullah, Yaser Daanial Khan · 2021 · Analytical Biochemistry
  55. Molecular Analysis of Asymptomatic Bacteriuria Escherichia coli Strain VR50 Reveals Adaptation to the Urinary Tract by Gene Acquisition
    Scott A. Beatson, Nouri L. Ben Zakour, Makrina Totsika, Brian M. Forde, Rebecca E. Watts, Amanda N. Mabbett, Jan M. Szubert, Sohinee Sarkar, Minh‐Duy Phan, Kate M. Peters et al. · 2015 · Infection and Immunity
  56. Discrimination Between 8‐Oxo‐2′‐Deoxyguanosine and 2′‐Deoxyguanosine in DNA by the Single Nucleotide Primer Extension Reaction with Adap Triphosphate
    Yosuke Taniguchi, Yoshiya Kikukawa, Shigeki Sasaki · 2015 · Angewandte Chemie International Edition
  57. Defining the sequence requirements for the positioning of base J in DNA using SMRT sequencing
    Paul-André Genest, Loren Baugh, Alex Taipale, Wanqi Zhao, Sabrina Z. Jan, Henri G.A.M. van Luenen, Jonas Korlach, Tyson A. Clark, Khai Luong, Matthew Boitano et al. · 2015 · Nucleic Acids Research
  58. Virulence-Related Transcriptional Regulators of Streptococcus pyogenes
    Luis Alberto Vega, Horst Malke, Kevin S. McIver · 2016
  59. Defining, distinguishing and detecting the contribution of heterogeneous methylation to cancer heterogeneity
    Thomas R. Pisanic, Pornpat Athamanolap, Tza‐Huei Wang · 2016 · Seminars in Cell and Developmental Biology
  60. De novo assembly of genomes from long sequence reads reveals uncharted territories of Propionibacterium freudenreichii
    Paulina Deptula, Pia Laine, Richard J. Roberts, Olli‐Pekka Smolander, Helena Vihinen, Vieno I. Piironen, Lars G. Paulin, Eija Jokitalo, Kirsi Savijoki, Petri Auvinen et al. · 2017 · BMC Genomics
  61. The DNA Methylome of the Hyperthermoacidophilic Crenarchaeon Sulfolobus acidocaldarius
    Mohea Couturier, Ann‐Christin Lindås · 2018 · Frontiers in Microbiology
  62. Symmetric and asymmetric DNA N6-adenine methylation regulates different biological responses in Mucorales
    Carlos Lax, Stephen James Mondo, Macario Osorio-Concepción, Anna Muszewska, María Corrochano-Luque, Gabriel Gutiérrez, Robert W. Riley, Anna Lipzen, Jie Guo, Hope N. Hundley et al. · 2024 · Nature Communications
  63. A sensitive microfluidic platform for a high throughput DNA methylation assay
    Maria Ronen, Dorit Avrahami, Doron Gerber · 2014 · Lab on a Chip
  64. Characterization of Class IIa Bacteriocin Resistance in Enterococcus faecium
    Kathryn Geldart, Yiannis N. Kaznessis · 2017 · Antimicrobial Agents and Chemotherapy
  65. The complete methylome of an entomopathogenic bacterium reveals the existence of loci with unmethylated Adenines
    Amaury Payelleville, Ludovic Legrand, Jean-Claude Ogier, Céline Lopez‐Roques, Alain Roulet, Olivier Bouchez, Annabelle Mouammine, Alain Givaudan, Julien Brillard · 2018 · Scientific Reports
  66. Type II Restriction of Bacteriophage DNA With 5hmdU-Derived Base Modifications
    Kiersten Flodman, Rebecca Tsai, Michael Y. Xu, Ivan Reis Correa Junior, Alyssa Copelas, Yan‐Jiun Lee, Ming‐Qun Xu, Peter Weigele, Shuang-yong Xu · 2019 · Frontiers in Microbiology
  67. Genome-wide systematic identification of methyltransferase recognition and modification patterns
    Torbjørn Ølshøj Jensen, Christian Tellgren‐Roth, Stephanie Redl, Jérôme Maury, Simo Abdessamad Baallal Jacobsen, Lasse Ebdrup Pedersen, Alex Toftgaard Nielsen · 2019 · Nature Communications
  68. Characterization of the Aerobic Anoxygenic Phototrophic Bacterium Sphingomonas sp. AAP5
    Karel Kopejtka, Yonghui Zeng, David Kaftan, Vadim Selyanin, Zdenko Gardian, Jürgen Tomasch, Rubén Sommaruga, Michal Koblížek · 2021 · Microorganisms
  69. Cooperative In Situ Assembly of G-Quadruplex DNAzyme Nanowires for One-Step Sensing of CpG Methylation in Human Genomes
    Lijuan Wang, Qian Han, Jian‐Ge Qiu, Chun‐yang Zhang · 2021 · Nano Letters
  70. Novel m4C modification in type I restriction-modification systems
    Richard Morgan, Yvette A. Luyten, Samuel A. Johnson, Emily M Clough, Tyson A. Clark, Richard J. Roberts · 2016 · Nucleic Acids Research
  71. Current and Emerging Technologies for the Analysis of the Genome-Wide and Locus-Specific DNA Methylation Patterns
    Jörg Tost · 2016 · Advances in experimental medicine and biology
  72. The Effects of Dithiothreitol on DNA
    Søren Fjelstrup, Marie Andersen, Jonas Thomsen, Jing Wang, Magnus Stougaard, Finn Skou Pedersen, Yi‐Ping Ho, Marianne Smedegaard Hede, Birgitta Ruth Knudsen · 2017 · Sensors
  73. Viral oncogenes, viruses, and cancer: a third-generation sequencing perspective on viral integration into the human genome
    Ruichen Ye, Angelina Wang, Brady Bu, Pengxiang Luo, Wenjun Deng, Xinyi Zhang, Shanye Yin · 2023 · Frontiers in Oncology
  74. Genome sequencing and transcriptome analysis of Geotrichum citri-aurantii on citrus reveal the potential pathogenic- and guazatine-resistance related genes
    Juan Zhao, Deyao Zhang, Zhe Wang, Zhonghuan Tian, Fan Yang, Xinjun Lu, Chao-an Long · 2020 · Genomics
  75. DNA Methylation Epigenetically Regulates Gene Expression in Burkholderia cenocepacia and Controls Biofilm Formation, Cell Aggregation, and Motility
    Ian Vandenbussche, Andrea M Sass, Marta Pinto‐Carbó, Olga Mannweiler, Leo Eberl, Tom Coenye · 2020 · mSphere
  76. Genome sequencing and flavor compound biosynthesis pathway analyses of Bacillus licheniformis isolated from Chinese Maotai-flavor liquor-brewing microbiome
    Fan Yang, Yanfeng Liu, Liangqiang Chen, Jianghua Li, Li Wang, Guocheng Du · 2020 · Food Biotechnology
  77. Deciphering Neurodegenerative Diseases Using Long-Read Sequencing
    Yun Su, Liyuan Fan, Changhe Shi, Tai Wang, Huimin Zheng, Haiyang Luo, Shuo Zhang, Zhengwei Hu, Yu Fan, Yali Dong et al. · 2021 · Neurology
  78. Mechanisms and Biological Roles of DNA Methyltransferases and DNA Methylation: From Past Achievements to Future Challenges
    Renata Zofia Jurkowska, Albert Jeltsch · 2022 · Advances in experimental medicine and biology
  79. A comparative analysis of methylome profiles of Campylobacter jejuni sheep abortion isolate and gastroenteric strains using PacBio data
    Kathy T. Y. Mou, Usha K. Muppirala, Andrew Josef Severin, Tyson A. Clark, Matthew Boitano, Paul Joseph Plummer · 2015 · Frontiers in Microbiology
  80. Enhancing Single Molecule Imaging in Optofluidics and Microfluidics
    Andreas E. Vasdekis, Grégoire Laporte · 2011 · International Journal of Molecular Sciences
  81. Novel biotechnology approaches in colorectal cancer diagnosis and therapy
    Soudabeh Kavousipour, Fathemeh Khademi, Mozhdeh Zamani, Bahareh Vakili, Pooneh Mokarram · 2017 · Biotechnology Letters
  82. Detection of DNA Modifications by Sequence-Specific Transcription Factors
    Jie Yang, Xing Zhang, Robert Blumenthal, Xiaodong Cheng · 2019 · Journal of Molecular Biology
  83. Epigenetic Phase Variation in Bacterial Pathogens
    Marjan W. van der Woude · 2017 · Epigenetics and human health
  84. PSAC-6mA: 6mA site identifier using self-attention capsule network based on sequence-positioning
    Zheyu Zhou, Cuilin Xiao, Jinfen Yin, Jiayi She, Hao Duan, Chunling Liu, Xiuhao Fu, Feifei Cui, Qi Qi, Zilong Zhang · 2024 · Computers in Biology and Medicine
  85. Now you see it: Genome methylation makes a comeback in Drosophila
    Dario Boffelli, Sachiko Takayama, David I. K. Martin · 2014 · BioEssays
  86. Recent Perspective of Next Generation Sequencing: Applications in Molecular Plant Biology and Crop Improvement
    Prashant Yadav, Era Vaidya Malhotra, Reema Rani, Navneet Kumar Yadav, Bhupender Singh, P. K. Rai, Dhiraj Singh · 2016 · Proceedings of the National Academy of Sciences India Section B Biological Sciences
  87. Characterization of the Type I Restriction Modification System Broadly Conserved among Group A Streptococci
    Sruti DebRoy, William C. Shropshire, Chau Nguyen Tran, Haiping Hao, Marc Gohel, Jessica Galloway-Peña, Blake Hanson, Anthony R. Flores, Samuel A. Shelburne · 2021 · mSphere
  88. Super‐resolution imaging: when biophysics meets nanophotonics
    A. Femius Koenderink, Roman Tsukanov, Jörg Enderlein, Ignacio Izeddin, Valentina Krachmalnicoff · 2021 · Nanophotonics
  89. Advances in sequencing technologies for amyotrophic lateral sclerosis research
    Evan Udine, Angita Jain, Marka van Blitterswijk · 2023 · Molecular Neurodegeneration
  90. Exploring bacterial epigenomics in the next-generation sequencing era: a new approach for an emerging frontier
    Poyin Chen, Richard Jeannotte, Bart C. Weimer · 2014 · Trends in Microbiology
  91. A Comparison of Single-Molecule Emission in Aluminum and Gold Zero-Mode Waveguides
    W. Elliott Martin, Bernadeta Srijanto, Charles Patrick Collier, Tom Vosch, Christopher I. Richards · 2016 · The Journal of Physical Chemistry A
  92. Restriction-modification mediated barriers to exogenous DNA uptake and incorporation employed by Prevotella intermedia
    Christopher D. Johnston, Chelsey A. Skeete, Alexey I. Fomenkov, Richard J. Roberts, Susan R. Rittling · 2017 · PLoS ONE
  93. Draft genome and reference transcriptomic resources for the urticating pine defoliator Thaumetopoea pityocampa (Lepidoptera: Notodontidae)
    Bernhard Gschloessl, Franck Dorkeld, Hélène Bergès, Genséric Beydon, Olivier Bouchez, Manuela Branco, Anthony Bretaudeau, Christian Burban, Emeric Dubois, Philippe Gauthier et al. · 2018 · Molecular Ecology Resources
  94. MultiMotifMaker: A Multi-Thread Tool for Identifying DNA Methylation Motifs from Pacbio Reads
    Tao Li, Xiankai Zhang, Feng Luo, Fang‐Xiang Wu, Jianxin Wang · 2018 · IEEE Transactions on Computational Biology and Bioinformatics
  95. Functionality of Two Origins of Replication in Vibrio cholerae Strains With a Single Chromosome
    Matthias Bruhn, Daniel Schindler, Franziska S. Kemter, Michael R. Wiley, Kitty Chase, G. I. Koroleva, Gustavo F. Palacios, Shanmuga Sozhamannan, Torsten Waldminghaus · 2018 · Frontiers in Microbiology
  96. Omics Analysis for Dinoflagellates Biology Research
    Yali Bi, Fangzhong Wang, Weiwen Zhang · 2019 · Microorganisms
  97. Viral genome sequencing methods: benefits and pitfalls of current approaches
    Natasha Jansz, Geoffrey J. Faulkner · 2024 · Biochemical Society Transactions
  98. Complete Genome Sequences of Eight Helicobacter pylori Strains with Different Virulence Factor Genotypes and Methylation Profiles, Isolated from Patients with Diverse Gastrointestinal Diseases on Okinawa Island, Japan, Determined Using PacBio Single-Molecule Real-Time Technology
    Kazuhito Satou, Akino Shiroma, Kuniko Teruya, Makiko Shimoji, Kazuma Nakano, Ayaka Juan, Hinako Tamotsu, Yasunobu Terabayashi, Misako Aoyama, Morimi Teruya et al. · 2014 · Genome Announcements
  99. Genome sequencing and comparative genomics reveal the potential pathogenic mechanism of Cercospora sojina Hara on soybean
    Xuming Luo, Jidong Cao, Junkai Huang, Zongyi Wang, Zhengyan Guo, Yihua Chen, MA Shu-mei, Jun Liu · 2017 · DNA Research
  100. Integration of the Salmonella Typhimurium Methylome and Transcriptome Reveals That DNA Methylation and Transcriptional Regulation Are Largely Decoupled under Virulence-Related Conditions
    Jeffrey S. Bourgeois, Caroline E. Anderson, Liuyang Wang, Jennifer L. Modliszewski, Wei Chen, Benjamin H. Schott, Nicolas Devos, Dennis C. Ko · 2022 · mBio