Direct detection of DNA methylation during single-molecule, real-time sequencing
Flusberg, Benjamin A, Webster, Dale R, Lee, Jessica H, Travers, Kevin J, Olivares, Eric C, Clark, Tyson A, Korlach, Jonas, Turner, Stephen W·2010·Nature Methods
Cited by (1,000)
Items 501–600 of 1,000
- Production and сharacterization of the exopolysaccharide from strain Paenibacillus polymyxa 2020Elena V. Liyaskina, Nadezhda A. Rakova, Alevtina A. Kitykina, Valentina V. Rusyaeva, Filip V. Toukach, Alexey I. Fomenkov, Saulius Vainauskas, Richard J. Roberts, В. В. Ревин · 2021 · PLoS ONE
- Opportunities in the microbial valorization of sugar industrial organic waste to biodegradable smart food packaging materialsSandhya Jayasekara, Lakshika Dissanayake, Lahiru Niroshan Jayakody · 2022 · International Journal of Food Microbiology
- Direct transposition of native DNA for sensitive multimodal single-molecule sequencingArjun Scott Nanda, Ke Wu, Iryna Irkliyenko, Brian Woo, Megan S Ostrowski, Andrew Scott Clugston, Leanne C. Sayles, Lingru Xu, Ansuman T. Satpathy, Hao Gia Nguyen et al. · 2024 · Nature Genetics
- 5‐Hydroxymethylcytosin, die sechste Base des GenomsMartin Münzel, Daniel Globisch, Thomas Carell · 2011 · Angewandte Chemie
- Myxosporea (Myxozoa, Cnidaria) Lack DNA Cytosine MethylationRyan Kyger, Agusto Luzuriaga-Neira, Thomas S. Layman, Tatiana Orli Milkewitz Sandberg, Devika Singh, Dorothée Huchon, Sateesh Peri, Stephen Douglas Atkinson, Jerri Lee Bartholomew, Soojin V. Yi et al. · 2020 · Molecular Biology and Evolution
- DeepMP: a deep learning tool to detect DNA base modifications on Nanopore sequencing dataJose Bonet, Mandi Chen, Marc Dabad, Simon Charles Heath, Abel González-Pérez, Núria López-Bigas, Jens Lagergren · 2021 · Bioinformatics
- Simultaneous sequencing of oxidized methylcytosines produced by TET/JBP dioxygenases in Coprinopsis cinereaLukas Chávez, Yun Huang, Khai Luong, Suneet Agarwal, Lakshminarayan M. Iyer, William A. Pastor, Virginia K. Hench, Sylvia A. Frazier‐Bowers, Evgenia Korol, Shuo Liu et al. · 2014 · Proceedings of the National Academy of Sciences
- BayMeth: improved DNA methylation quantification for affinity capture sequencing data using a flexible Bayesian approachAndrea Riebler, Mirco Menigatti, Jenny Z. Song, Aaron L. Statham, Clare Stirzaker, Nadiya Mahmud, Charles A. Mein, Susan J. Clark, Mark D. Robinson · 2014 · Genome biology
- Transgenerational Epigenetic Inheritance Under Environmental Stress by Genome-Wide DNA Methylation Profiling in CyanobacteriumLang Hu, Peng Xiao, Yongguang Jiang, Mingjie Dong, Zixi Chen, Hui Li, Zhangli Hu, Anping Lei, Jiangxin Wang · 2018 · Frontiers in Microbiology
- Decoding the microbial universe with metagenomics: a brief insightHiral G. Chaudhari, Shobha Prajapati, Zuhour Hussein Wardah, Gopalkumar G. Raol, Vimalkumar Prajapati, Rajesh Kanjibhai Patel, Ali Abdullah Shati, Mohammad Yahya Alfaifi, Serag Eldin I. Elbehairi, Riyaz Zafar Sayyed · 2023 · Frontiers in Genetics
- DNA methylation in breast cancer: early detection and biomarker discovery through current and emerging approachesMelissa Hum, Ann S. G. Lee · 2025 · Journal of Translational Medicine
- Massively parallel sequencing: the new frontier of hematologic genomicsJill M. Johnsen, Deborah A. Nickerson, Alex P. Reiner · 2013 · Blood
- Complex Interplay among DNA Modification, Noncoding RNA Expression and Protein-Coding RNA Expression in Salvia miltiorrhiza Chloroplast GenomeHaimei Chen, Jianhui Zhang, George Yuan, Chang Liu · 2014 · PLoS ONE
- The Hunt for 5-Hydroxymethylcytosine: The Sixth BaseChun‐Xiao Song, Chuan He · 2011 · Epigenomics
- A Type I Restriction-Modification System Associated with Enterococcus faecium Subspecies SeparationWenwen Huo, Hannah M. Adams, Cristian Trejo, Rohit Badia, Kelli L. Palmer · 2018 · Applied and Environmental Microbiology
- Electrochemiluminescence biosensor for DNA hydroxymethylation detection based on enzyme-catalytic covalent bonding reaction of –CH2OH and thiol functionalized Fe3O4 magnetic beadsChengji Sui, Huanshun Yin, Lingsong Wang, Yunlei Zhou, Shiyun Ai · 2019 · Biosensors and Bioelectronics
- Genomic Stability and Genetic Defense Systems in Dolosigranulum pigrum , a Candidate Beneficial Bacterium from the Human MicrobiomeStephany Flores Ramos, Silvio D. Brugger, Isabel F. Escapa, Chelsey A. Skeete, Sean L. Cotton, Sara M. Eslami, Wei Gao, Lindsey Bomar, Tommy H. Tran, Dakota S. Jones et al. · 2021 · mSystems
- Feasible strategies for studying the involvement of DNA methylation and histone acetylation in the stress-induced formation of quality-related metabolites in tea (Camellia sinensis)Jie Yang, Dachuan Gu, Shuhua Wu, Xiaochen Zhou, Jiaming Chen, Yinyin Liao, Lanting Zeng, Ziyin Yang · 2021 · Horticulture Research
- Electrochemical biosensor for detection of DNA hydroxymethylation based on glycosylation and alkaline phosphatase catalytic signal amplificationYunlei Zhou, Zhiqing Yang, Xue Li, Yue Wang, Huanshun Yin, Shiyun Ai · 2015 · Electrochimica Acta
- Evaluation of Genome Sequencing Quality in Selected Plant Species Using Expressed Sequence TagsLingfei Shangguan, Jian Han, Emrul Kayesh, Xin Sun, Changqing Zhang, Tariq Pervaiz, Xicheng Wen, Jinggui Fang · 2013 · PLoS ONE
- RADAR-seq: A RAre DAmage and Repair sequencing method for detecting DNA damage on a genome-wide scaleZatopek, Kelly M., Potapov, Vladimir, Maduzia, Lisa L., Alpaslan, Ece, Chen, Lixin, Evans, Thomas C., Ong, Jennifer L., Ettwiller, Laurence M., Gardner, Andrew F. · 2019 · DNA Repair
- Downregulation of transposable elements extends lifespan in Caenorhabditis elegansÁdám Sturm, Éva Saskői, Bernadette Hotzi, Anna Tarnóci, János Barna, Ferenc Bodnár, Himani Sharma, Attila L. Kovács, Eszter EA Ari, Nóra Weinhardt et al. · 2023 · Nature Communications
- tRNA biology in the omics era: Stress signalling dynamics and cancer progressionAndrea Orioli · 2016 · BioEssays
- An Overview of Cultural, Molecular and Metagenomic Techniques in Description of Microbial DiversityUwem Okon Edet, S. P. Antai, A. A. Brooks, Atim Asitok, Osim Enya, F Japhet · 2017 · Journal of Advances in Microbiology
- A protein architecture guided screen for modification dependent restriction endonucleasesThomas Lutz, Kiersten Flodman, Alyssa Copelas, H. Czapinska, Megumu Yamada Mabuchi, Alexey I. Fomenkov, Xinyi He, Matthias Bochtler, Shuang-yong Xu · 2019 · Nucleic Acids Research
- Accurate prediction of DNA N4-methylcytosine sites via boost-learning various types of sequence featuresZhixun Zhao, Xiaocai Zhang, Fang Chen, Liang Fang, Jinyan Li · 2020 · BMC Genomics
- A primer on metagenomics and next‐generation sequencing in fish gut microbiome researchTina Kollannoor Johny, Rinu Madhu Puthusseri, Sarita Ganapathy Bhat · 2021 · Aquaculture Research
- High contiguity de novo genome assembly and DNA modification analyses for the fungus fly, Sciara coprophila, using single-molecule sequencingJohn M. Urban, Michael S. Foulk, Jacob E. Bliss, C. Michelle Coleman, Nanyan Lu, Reza Mazloom, Susan Jayne Brown, Allan C. Spradling, Susan A. Gerbi · 2021 · BMC Genomics
- Hyb4mC: a hybrid DNA2vec-based model for DNA N4-methylcytosine sites predictionYing Liang, Yanan Wu, Zequn Zhang, Niannian Liu, Jun Peng, Jianjun Tang · 2022 · BMC Bioinformatics
- A simple, low-cost, and rapid device for a DNA methylation-specific amplification/detection system using a flexible plastic and silicon complexTae Yoon Lee, Yong Moon Shin, Mi Kyoung Park · 2014 · Lab on a Chip
- Atomic force microscopy on chromosomes, chromatin and DNA: A reviewWouter H. J. Kalle, Pádraig Strappe · 2012 · Micron
- 5-Methylcytosine and Its DerivativesBi‐Feng Yuan · 2014 · Advances in clinical chemistry
- Integrating Epigenomics into the Understanding of Biomedical InsightYixing Han, Ximiao He · 2016 · Bioinformatics and Biology Insights
- Analyzing AbrB-Knockout Effects through Genome and Transcriptome Sequencing of Bacillus licheniformis DW2Cheng-Cheng Shu, Dong Wang, Jing Guo, Jia‐Ming Song, Shouwen Chen, Ling‐Ling Chen, Junxiang Gao · 2018 · Frontiers in Microbiology
- Study of the whole genome, methylome and transcriptome of Cordyceps militarisYujiao Chen, Yuqian Wu, Li Liu, Jianhua Feng, Tiancheng Zhang, Sheng Qin, Xingyu Zhao, Chaoxia Wang, Dongmei Li, Wei Han et al. · 2019 · Scientific Reports
- Single-Molecule Fluorescence Imaging for Ultrasensitive DNA Methyltransferase Activity Measurement and Inhibitor ScreeningHongding Zhang, Kun Zhang, Yuanyuan Yao, Yujie Liu, Ji Ji, Xuedong Huang, Jianwei Liu, Baohong Liu · 2019 · Analytical Chemistry
- Application of third-generation sequencing in cancer researchZhiao Chen, Xianghuo He · 2021 · Medical Review
- qDNAmod: a statistical model-based tool to reveal intercellular heterogeneity of DNA modification from SMRT sequencing dataZhixing Feng, Jing Li, Jing-Ren Zhang, Xuegong Zhang · 2014 · Nucleic Acids Research
- Comparative Genomics Reveals the Diversity of Restriction-Modification Systems and DNA Methylation Sites in Listeria monocytogenesPoyin Chen, Henk C. den Bakker, Jonas Korlach, Nguyet T. Kong, Dylan Bobby Storey, Ellen E. Paxinos, Meredith Ashby, Tyson A. Clark, Khai Luong, Martin Wiedmann et al. · 2016 · Applied and Environmental Microbiology
- Single-Molecule Sequencing (PacBio) of the Staphylococcus capitis NRCS-A Clone Reveals the Basis of Multidrug Resistance and Adaptation to the Neonatal Intensive Care Unit EnvironmentPatrícia Martins-Simões, Hajar Lemriss, Yann Dumont, Sanaâ Lemriss, Jean‐Philippe Rasigade, Sophie Trouillet‐Assant, Azeddine Ibrahimi, Saâd El Kabbaj, Marine Butin, Frederic J. Laurent · 2016 · Frontiers in Microbiology
- LW-FQZip 2: a parallelized reference-based compression of FASTQ filesZhi-An Huang, Zhenkun Wen, Qingjin Deng, Ying Chu, Yiwen Sun, Zexuan Zhu · 2017 · BMC Bioinformatics
- Double and single stranded detection of 5-methylcytosine and 5-hydroxymethylcytosine with nanopore sequencingDominic Oliver Halliwell, Floris Honig, Stefan Bagby, Sandipan Roy, Adele Murrell · 2025 · Communications Biology
- Data quality of whole genome bisulfite sequencing on Illumina platformsAmanda Raine, Ulrika Liljedahl, Jessica Nordlund · 2018 · PLoS ONE
- Comparative Analysis of Whole-Genome and Methylome Profiles of a Smooth and a Rough Mycobacterium abscessus Clinical StrainChiranjibi Chhotaray, Shuai Wang, Yaoju Tan, Amjad Ali, Muhammad Shehroz, Cuiting Fang, Yang Liu, Zhili Lu, Xingshan Cai, H. M. Adnan Hameed et al. · 2019 · G3 Genes Genomes Genetics
- Analysis of a phase-variable restriction modification system of the human gut symbiont Bacteroides fragilisNadav Ben-Assa, Michael J. Coyne, Alexey I. Fomenkov, Jonathan Livny, William Paul Robins, Maite Muniesa, Vincent J. Carey, Shaqed Carasso, Tal Gefen, Juan T. Jofre et al. · 2020 · Nucleic Acids Research
- Research Progress in Predicting DNA Methylation Modifications and the Relation with Human DiseasesChunyan Ao, Lin Gao, Liang Yu · 2021 · Current Medicinal Chemistry
- Chemoenzymatic labeling of DNA methylation patterns for single-molecule epigenetic mappingTslil Gabrieli, Yael Michaeli, Sigal Avraham, Dmitry Torchinsky, Sapir Margalit, Leonie Schütz, Matyas Juhasz, Ceyda Çoruh, Nissim Arbib, Zhaohui Sunny Zhou et al. · 2022 · Nucleic Acids Research
- Active human nucleolar organizer regions are interspersed with inactive rDNA repeats in normal and tumor cellsZillner, Karina, Komatsu, Jun, Filarsky, Katharina, Kalepu, Rajakiran, Bensimon, Aaron, Németh, Attila · 2015 · Epigenomics
- 5-Hydroxymethylcytosine: Far Beyond the Intermediate of DNA DemethylationKaixi Zheng, Zhengbing Lyu, Jianqing Chen, Guodong Chen · 2024 · International Journal of Molecular Sciences
- A review on the applications of Transformer-based language models for nucleotide sequence analysisNimisha Ghosh, Daniele Santoni, Indrajit Saha, Giovanni Felici · 2025 · Computational and Structural Biotechnology Journal
- Future Challenges in Single-Molecule Fluorescence and Laser Trap Approaches to Studies of Molecular MotorsMary Williard Elting, James A. Spudich · 2012 · Developmental Cell
- Lineage-Specific Methyltransferases Define the Methylome of the Globally Disseminated Escherichia coli ST131 CloneBrian M. Forde, Minh‐Duy Phan, Jayde A. Gawthorne, Melinda M. Ashcroft, Mitchell J. Stanton-Cook, Sohinee Sarkar, Kate M. Peters, Kok‐Gan Chan, Teik Min Chong, Wai‐Fong Yin et al. · 2015 · mBio
- Bypassing the Restriction System To Improve Transformation of Staphylococcus epidermidisStephen K. Costa, Niles P. Donegan, Anna Corvaglia, Patrice François, Ambrose L. Cheung · 2017 · Journal of Bacteriology
- 4mC-RF: Improving the prediction of 4mC sites using composition and position relative features and statistical momentWajdi Alghamdi, Ebraheem O. Alzahrani, Malik Zaka Ullah, Yaser Daanial Khan · 2021 · Analytical Biochemistry
- Molecular Analysis of Asymptomatic Bacteriuria Escherichia coli Strain VR50 Reveals Adaptation to the Urinary Tract by Gene AcquisitionScott A. Beatson, Nouri L. Ben Zakour, Makrina Totsika, Brian M. Forde, Rebecca E. Watts, Amanda N. Mabbett, Jan M. Szubert, Sohinee Sarkar, Minh‐Duy Phan, Kate M. Peters et al. · 2015 · Infection and Immunity
- Discrimination Between 8‐Oxo‐2′‐Deoxyguanosine and 2′‐Deoxyguanosine in DNA by the Single Nucleotide Primer Extension Reaction with Adap TriphosphateYosuke Taniguchi, Yoshiya Kikukawa, Shigeki Sasaki · 2015 · Angewandte Chemie International Edition
- Defining the sequence requirements for the positioning of base J in DNA using SMRT sequencingPaul-André Genest, Loren Baugh, Alex Taipale, Wanqi Zhao, Sabrina Z. Jan, Henri G.A.M. van Luenen, Jonas Korlach, Tyson A. Clark, Khai Luong, Matthew Boitano et al. · 2015 · Nucleic Acids Research
- Virulence-Related Transcriptional Regulators of Streptococcus pyogenesLuis Alberto Vega, Horst Malke, Kevin S. McIver · 2016
- Defining, distinguishing and detecting the contribution of heterogeneous methylation to cancer heterogeneityThomas R. Pisanic, Pornpat Athamanolap, Tza‐Huei Wang · 2016 · Seminars in Cell and Developmental Biology
- De novo assembly of genomes from long sequence reads reveals uncharted territories of Propionibacterium freudenreichiiPaulina Deptula, Pia Laine, Richard J. Roberts, Olli‐Pekka Smolander, Helena Vihinen, Vieno I. Piironen, Lars G. Paulin, Eija Jokitalo, Kirsi Savijoki, Petri Auvinen et al. · 2017 · BMC Genomics
- The DNA Methylome of the Hyperthermoacidophilic Crenarchaeon Sulfolobus acidocaldariusMohea Couturier, Ann‐Christin Lindås · 2018 · Frontiers in Microbiology
- Symmetric and asymmetric DNA N6-adenine methylation regulates different biological responses in MucoralesCarlos Lax, Stephen James Mondo, Macario Osorio-Concepción, Anna Muszewska, María Corrochano-Luque, Gabriel Gutiérrez, Robert W. Riley, Anna Lipzen, Jie Guo, Hope N. Hundley et al. · 2024 · Nature Communications
- A sensitive microfluidic platform for a high throughput DNA methylation assayMaria Ronen, Dorit Avrahami, Doron Gerber · 2014 · Lab on a Chip
- Characterization of Class IIa Bacteriocin Resistance in Enterococcus faeciumKathryn Geldart, Yiannis N. Kaznessis · 2017 · Antimicrobial Agents and Chemotherapy
- The complete methylome of an entomopathogenic bacterium reveals the existence of loci with unmethylated AdeninesAmaury Payelleville, Ludovic Legrand, Jean-Claude Ogier, Céline Lopez‐Roques, Alain Roulet, Olivier Bouchez, Annabelle Mouammine, Alain Givaudan, Julien Brillard · 2018 · Scientific Reports
- Type II Restriction of Bacteriophage DNA With 5hmdU-Derived Base ModificationsKiersten Flodman, Rebecca Tsai, Michael Y. Xu, Ivan Reis Correa Junior, Alyssa Copelas, Yan‐Jiun Lee, Ming‐Qun Xu, Peter Weigele, Shuang-yong Xu · 2019 · Frontiers in Microbiology
- Genome-wide systematic identification of methyltransferase recognition and modification patternsTorbjørn Ølshøj Jensen, Christian Tellgren‐Roth, Stephanie Redl, Jérôme Maury, Simo Abdessamad Baallal Jacobsen, Lasse Ebdrup Pedersen, Alex Toftgaard Nielsen · 2019 · Nature Communications
- Characterization of the Aerobic Anoxygenic Phototrophic Bacterium Sphingomonas sp. AAP5Karel Kopejtka, Yonghui Zeng, David Kaftan, Vadim Selyanin, Zdenko Gardian, Jürgen Tomasch, Rubén Sommaruga, Michal Koblížek · 2021 · Microorganisms
- Cooperative In Situ Assembly of G-Quadruplex DNAzyme Nanowires for One-Step Sensing of CpG Methylation in Human GenomesLijuan Wang, Qian Han, Jian‐Ge Qiu, Chun‐yang Zhang · 2021 · Nano Letters
- Novel m4C modification in type I restriction-modification systemsRichard Morgan, Yvette A. Luyten, Samuel A. Johnson, Emily M Clough, Tyson A. Clark, Richard J. Roberts · 2016 · Nucleic Acids Research
- Current and Emerging Technologies for the Analysis of the Genome-Wide and Locus-Specific DNA Methylation PatternsJörg Tost · 2016 · Advances in experimental medicine and biology
- The Effects of Dithiothreitol on DNASøren Fjelstrup, Marie Andersen, Jonas Thomsen, Jing Wang, Magnus Stougaard, Finn Skou Pedersen, Yi‐Ping Ho, Marianne Smedegaard Hede, Birgitta Ruth Knudsen · 2017 · Sensors
- Viral oncogenes, viruses, and cancer: a third-generation sequencing perspective on viral integration into the human genomeRuichen Ye, Angelina Wang, Brady Bu, Pengxiang Luo, Wenjun Deng, Xinyi Zhang, Shanye Yin · 2023 · Frontiers in Oncology
- Genome sequencing and transcriptome analysis of Geotrichum citri-aurantii on citrus reveal the potential pathogenic- and guazatine-resistance related genesJuan Zhao, Deyao Zhang, Zhe Wang, Zhonghuan Tian, Fan Yang, Xinjun Lu, Chao-an Long · 2020 · Genomics
- DNA Methylation Epigenetically Regulates Gene Expression in Burkholderia cenocepacia and Controls Biofilm Formation, Cell Aggregation, and MotilityIan Vandenbussche, Andrea M Sass, Marta Pinto‐Carbó, Olga Mannweiler, Leo Eberl, Tom Coenye · 2020 · mSphere
- Genome sequencing and flavor compound biosynthesis pathway analyses of Bacillus licheniformis isolated from Chinese Maotai-flavor liquor-brewing microbiomeFan Yang, Yanfeng Liu, Liangqiang Chen, Jianghua Li, Li Wang, Guocheng Du · 2020 · Food Biotechnology
- Deciphering Neurodegenerative Diseases Using Long-Read SequencingYun Su, Liyuan Fan, Changhe Shi, Tai Wang, Huimin Zheng, Haiyang Luo, Shuo Zhang, Zhengwei Hu, Yu Fan, Yali Dong et al. · 2021 · Neurology
- Mechanisms and Biological Roles of DNA Methyltransferases and DNA Methylation: From Past Achievements to Future ChallengesRenata Zofia Jurkowska, Albert Jeltsch · 2022 · Advances in experimental medicine and biology
- A comparative analysis of methylome profiles of Campylobacter jejuni sheep abortion isolate and gastroenteric strains using PacBio dataKathy T. Y. Mou, Usha K. Muppirala, Andrew Josef Severin, Tyson A. Clark, Matthew Boitano, Paul Joseph Plummer · 2015 · Frontiers in Microbiology
- Enhancing Single Molecule Imaging in Optofluidics and MicrofluidicsAndreas E. Vasdekis, Grégoire Laporte · 2011 · International Journal of Molecular Sciences
- Novel biotechnology approaches in colorectal cancer diagnosis and therapySoudabeh Kavousipour, Fathemeh Khademi, Mozhdeh Zamani, Bahareh Vakili, Pooneh Mokarram · 2017 · Biotechnology Letters
- Detection of DNA Modifications by Sequence-Specific Transcription FactorsJie Yang, Xing Zhang, Robert Blumenthal, Xiaodong Cheng · 2019 · Journal of Molecular Biology
- Epigenetic Phase Variation in Bacterial PathogensMarjan W. van der Woude · 2017 · Epigenetics and human health
- PSAC-6mA: 6mA site identifier using self-attention capsule network based on sequence-positioningZheyu Zhou, Cuilin Xiao, Jinfen Yin, Jiayi She, Hao Duan, Chunling Liu, Xiuhao Fu, Feifei Cui, Qi Qi, Zilong Zhang · 2024 · Computers in Biology and Medicine
- Now you see it: Genome methylation makes a comeback in DrosophilaDario Boffelli, Sachiko Takayama, David I. K. Martin · 2014 · BioEssays
- Recent Perspective of Next Generation Sequencing: Applications in Molecular Plant Biology and Crop ImprovementPrashant Yadav, Era Vaidya Malhotra, Reema Rani, Navneet Kumar Yadav, Bhupender Singh, P. K. Rai, Dhiraj Singh · 2016 · Proceedings of the National Academy of Sciences India Section B Biological Sciences
- Characterization of the Type I Restriction Modification System Broadly Conserved among Group A StreptococciSruti DebRoy, William C. Shropshire, Chau Nguyen Tran, Haiping Hao, Marc Gohel, Jessica Galloway-Peña, Blake Hanson, Anthony R. Flores, Samuel A. Shelburne · 2021 · mSphere
- Super‐resolution imaging: when biophysics meets nanophotonicsA. Femius Koenderink, Roman Tsukanov, Jörg Enderlein, Ignacio Izeddin, Valentina Krachmalnicoff · 2021 · Nanophotonics
- Advances in sequencing technologies for amyotrophic lateral sclerosis researchEvan Udine, Angita Jain, Marka van Blitterswijk · 2023 · Molecular Neurodegeneration
- Exploring bacterial epigenomics in the next-generation sequencing era: a new approach for an emerging frontierPoyin Chen, Richard Jeannotte, Bart C. Weimer · 2014 · Trends in Microbiology
- A Comparison of Single-Molecule Emission in Aluminum and Gold Zero-Mode WaveguidesW. Elliott Martin, Bernadeta Srijanto, Charles Patrick Collier, Tom Vosch, Christopher I. Richards · 2016 · The Journal of Physical Chemistry A
- Restriction-modification mediated barriers to exogenous DNA uptake and incorporation employed by Prevotella intermediaChristopher D. Johnston, Chelsey A. Skeete, Alexey I. Fomenkov, Richard J. Roberts, Susan R. Rittling · 2017 · PLoS ONE
- Draft genome and reference transcriptomic resources for the urticating pine defoliator Thaumetopoea pityocampa (Lepidoptera: Notodontidae)Bernhard Gschloessl, Franck Dorkeld, Hélène Bergès, Genséric Beydon, Olivier Bouchez, Manuela Branco, Anthony Bretaudeau, Christian Burban, Emeric Dubois, Philippe Gauthier et al. · 2018 · Molecular Ecology Resources
- MultiMotifMaker: A Multi-Thread Tool for Identifying DNA Methylation Motifs from Pacbio ReadsTao Li, Xiankai Zhang, Feng Luo, Fang‐Xiang Wu, Jianxin Wang · 2018 · IEEE Transactions on Computational Biology and Bioinformatics
- Functionality of Two Origins of Replication in Vibrio cholerae Strains With a Single ChromosomeMatthias Bruhn, Daniel Schindler, Franziska S. Kemter, Michael R. Wiley, Kitty Chase, G. I. Koroleva, Gustavo F. Palacios, Shanmuga Sozhamannan, Torsten Waldminghaus · 2018 · Frontiers in Microbiology
- Omics Analysis for Dinoflagellates Biology ResearchYali Bi, Fangzhong Wang, Weiwen Zhang · 2019 · Microorganisms
- Viral genome sequencing methods: benefits and pitfalls of current approachesNatasha Jansz, Geoffrey J. Faulkner · 2024 · Biochemical Society Transactions
- Complete Genome Sequences of Eight Helicobacter pylori Strains with Different Virulence Factor Genotypes and Methylation Profiles, Isolated from Patients with Diverse Gastrointestinal Diseases on Okinawa Island, Japan, Determined Using PacBio Single-Molecule Real-Time TechnologyKazuhito Satou, Akino Shiroma, Kuniko Teruya, Makiko Shimoji, Kazuma Nakano, Ayaka Juan, Hinako Tamotsu, Yasunobu Terabayashi, Misako Aoyama, Morimi Teruya et al. · 2014 · Genome Announcements
- Genome sequencing and comparative genomics reveal the potential pathogenic mechanism of Cercospora sojina Hara on soybeanXuming Luo, Jidong Cao, Junkai Huang, Zongyi Wang, Zhengyan Guo, Yihua Chen, MA Shu-mei, Jun Liu · 2017 · DNA Research
- Integration of the Salmonella Typhimurium Methylome and Transcriptome Reveals That DNA Methylation and Transcriptional Regulation Are Largely Decoupled under Virulence-Related ConditionsJeffrey S. Bourgeois, Caroline E. Anderson, Liuyang Wang, Jennifer L. Modliszewski, Wei Chen, Benjamin H. Schott, Nicolas Devos, Dennis C. Ko · 2022 · mBio