SignalP 4.0: discriminating signal peptides from transmembrane regions

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   Stoeger, Thomas, Gerlach, Martin, Morimoto, Richard I., Nunes Amaral, Luís A. · 2018 · PLOS Biology
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   Alberto Antonelli, Marco Maria D’Andrea, Andrea Brenciani, Cesira L. Galeotti, Gianluca Morroni, Simona Pollini, Pietro Emanuele Varaldo, Gian María Rossolini · 2018 · Journal of Antimicrobial Chemotherapy
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   Christopher P. Randall, Arya Gupta, Nicole C. Jackson, David C. Busse, Alex J. O’Neill · 2015 · Journal of Antimicrobial Chemotherapy
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    Eichelbaum, Katrin, Winter, Markus, Diaz, Mauricio Berriel, Herzig, Stephan, Krijgsveld, Jeroen · 2012 · Nature Biotechnology
14. The Genome of the Anaerobic Fungus Orpinomyces sp. Strain C1A Reveals the Unique Evolutionary History of a Remarkable Plant Biomass Degrader
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15. Origin and Spread of de Novo Genes in Drosophila melanogaster Populations
    Li Zhao, Perot Saelao, Corbin D. Jones, David J Begun · 2014 · Science
16. Effector profiles distinguish formae speciales of Fusarium oxysporum
    Peter van Dam, Like Fokkens, Sarah Maria Schmidt, Jasper Linmans, Harold Corby Kistler, Li‐Jun Ma, Martijn Rep · 2016 · Environmental Microbiology
17. A cerato‐platanin protein SsCP1 targets plant PR1 and contributes to virulence of Sclerotinia sclerotiorum
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18. The genome and developmental transcriptome of the strongylid nematode Haemonchus contortus
    Erich M. Schwarz, Pasi K. Korhonen, Bronwyn E. Campbell, Neil David Young, Aaron R. Jex, Abdul Jabbar, Ross S. Hall, Alinda Mondal, Adina Howe, Jason Pell et al. · 2013 · Genome biology
19. A Mutation in the 5′-UTR of IFITM5 Creates an In-Frame Start Codon and Causes Autosomal-Dominant Osteogenesis Imperfecta Type V with Hyperplastic Callus
    Oliver Semler, Lutz Garbes, Katharina Keupp, Daniel Swan, Katharina Zimmermann, Jutta Becker, Sandra Iden, Brunhilde Wirth, Peer Eysel, Friederike Koerber et al. · 2012 · The American Journal of Human Genetics
20. Molecular mechanisms for photosynthetic carbon partitioning into storage neutral lipids in Nannochloropsis oceanica under nitrogen-depletion conditions
    Jing Jia, Danxiang Han, Henri G. Gerken, Yantao Li, Milton R. Sommerfeld, Qiang Hu, Jian Xu · 2014 · Algal Research
21. An Overview of the Bacterial Carbonic Anhydrases
    Claudiu Trandafir Supuran, Clemente Capasso · 2017 · Metabolites
22. Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes
    Sberro, Hila, Fremin, Brayon J., Zlitni, Soumaya, Edfors, Fredrik, Greenfield, Nicholas, Snyder, Michael P., Pavlopoulos, Georgios A., Kyrpides, Nikos C., Bhatt, Ami S. · 2019 · Cell
23. Structure Analysis Uncovers a Highly Diverse but Structurally Conserved Effector Family in Phytopathogenic Fungi
    Karine Montet de Guillen, Diana Ortiz, Jérôme Gracy, Elisabeth Fournier, Thomas Kroj, André Padilla · 2015 · PLoS Pathogens
24. The Complete Genome Sequence of the Phytopathogenic Fungus Sclerotinia sclerotiorum Reveals Insights into the Genome Architecture of Broad Host Range Pathogens
    Mark C. Derbyshire, Matthew Denton‐Giles, Dwayne D. Hegedus, Shirin Seifbarghi, Jeffrey A. Rollins, Jan A. L. van Kan, Michael F. Seidl, Luigi Faino, Malick Mbengué, Olivier Navaud et al. · 2017 · Genome Biology and Evolution
25. The Plasmodiophora brassicae genome reveals insights in its life cycle and ancestry of chitin synthases
    Arne Schwelm, Johan Fogelqvist, Andrea Knaust, Sabine Jülke, Tua Lilja, Germán Bonilla‐Rosso, Magnus Karlsson, Andrej Shevchenko, Vignesh Dhandapani, Su Ryun Choi et al. · 2015 · Scientific Reports
26. Secretome analysis reveals effector candidates associated with broad host range necrotrophy in the fungal plant pathogen Sclerotinia sclerotiorum
    Koanna Guyon, C. Balagué, D. Roby, S. Raffaele · 2014 · BMC Genomics
27. Niche differentiation is spatially and temporally regulated in the rhizosphere
    Erin Nuccio, Evan Starr, Ulaş Karaöz, Eoin Brodie, Jizhong Z. Zhou, Susannah Green Tringe, Rex R. Malmstrom, Tanja Woyke, Jillian F. Banfield, Mary K. Firestone et al. · 2020 · The ISME Journal
28. Successional action of Bacteroidota and Firmicutes in decomposing straw polymers in a paddy soil
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29. GroEL from the endosymbiont Buchnera aphidicola betrays the aphid by triggering plant defense
    Ritu Chaudhary, Hagop S. Atamian, Zhouxin Shen, Steven P. Briggs, Isgouhi Kaloshian · 2014 · Proceedings of the National Academy of Sciences
30. A Catalytic Role of XoxF1 as La3+-Dependent Methanol Dehydrogenase in Methylobacterium extorquens Strain AM1
    Tomoyuki Nakagawa, Ryoji Mitsui, Akio Tani, Kentaro Sasa, Shinya Tashiro, Tomonori Iwama, T. Hayakawa, Keiichi Kawai · 2012 · PLoS ONE
31. Myeloid-derived growth factor (C19orf10) mediates cardiac repair following myocardial infarction
    Mortimer Korf‐Klingebiel, Marc R. Reboll, Stefanie Klede, Torben Brod, Andreas Pich, Felix Polten, Lars Christian Napp, Johann K Bauersachs, Arnold Ganser, Eva Brinkmann et al. · 2015 · Nature Medicine
32. Characterization of Skin Aging–Associated Secreted Proteins (SAASP) Produced by Dermal Fibroblasts Isolated from Intrinsically Aged Human Skin
    Waldera Lupa, Daniel M., Kalfalah, Faiza, Safferling, Kai, Boukamp, Petra, Poschmann, Gereon, Volpi, Elena, Götz-Rösch, Christine, Bernerd, Francoise, Haag, Laura, Huebenthal, Ulrike et al. · 2015 · Journal of Investigative Dermatology
33. EuPathDB: the eukaryotic pathogen genomics database resource
    Cristina Aurrecoechea, Ana Barreto, Evelina Y. Basenko, John E. Brestelli, Brian P. Brunk, Shon Cade, Kathryn Crouch, Ryan Doherty, Dave Falke, Steve Fischer et al. · 2016 · Nucleic Acids Research
34. Engineered Regulatory Systems Modulate Gene Expression of Human Commensals in the Gut
    Bentley Lim, Michael Zimmermann, Natasha A. Barry, Andrew L. Goodman · 2017 · Cell
35. Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes
    Anna V Vlasova, Salvador Capella-Gutiérrez, Martha Rendón‐Anaya, Miguel Ángel Hernández‐Oñate, André E. Minoche, Ionas Erb, Francisco Câmara, Pablo Prieto, André Corvelo, Walter Sanseverino et al. · 2016 · Genome biology
36. A novel psychrophilic alkaline phosphatase from the metagenome of tidal flat sediments
    Dae‐Hee Lee, Su‐Lim Choi, Eugene Rha, Soo Jin Kim, Soo‐Jin Yeom, Jae-Hee Moon, Seung‐Goo Lee · 2015 · BMC Biotechnology
37. DNA damage in germ cells induces an innate immune response that triggers systemic stress resistance
    Ermolaeva, Maria A., Segref, Alexandra, Dakhovnik, Alexander, Ou, Hui-Ling, Schneider, Jennifer I., Utermöhlen, Olaf, Hoppe, Thorsten, Schumacher, Björn · 2013 · Nature
38. Construction and comparison of three reference‐quality genome assemblies for soybean
    Babu Valliyodan, Steven B. Cannon, Philipp E. Bayer, Shengqiang Shu, Anne V. Brown, Longhui Ren, Jerry W. Jenkins, Claire Chung, Ting‐Fung Chan, Chris G. Daum et al. · 2019 · The Plant Journal
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    Wannes Dermauw, Aris Ilias, Maria Riga, Anastasia Tsagkarakou, Miodrag Grbić, Luc Tirry, Thomas Van Leeuwen, John G. VONTAS · 2012 · Insect Biochemistry and Molecular Biology
40. Human symbionts inject and neutralize antibacterial toxins to persist in the gut
    Aaron G. Wexler, Yiqiao Bao, John C. C. Whitney, Louis‐Marie Bobay, João B. Xavier, Whitman B. Schofield, Natasha A. Barry, Alistair B. Russell, Bao Quoc Tran, Young Ah Goo et al. · 2016 · Proceedings of the National Academy of Sciences
41. Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx
    Federico Abascal, André Corvelo, Fernando Cruz, José Luis Villanueva‐Cañas, Anna V Vlasova, Marina Marcet‐Houben, Begoña Martínez‐Cruz, Jade Yu Cheng, Pablo Prieto, Vı́ctor Quesada et al. · 2016 · Genome biology
42. Receptor-mediated chitin perception in legume roots is functionally separable from Nod factor perception
    Zoltán Bozsóki, Jeryl Cheng, Feng Feng, Kira Gysel, Maria Vinther, Kasper R. Andersen, Giles E. D. Oldroyd, Mickaël Blaise, Simona Radutoiu, Jens Stougaard · 2017 · Proceedings of the National Academy of Sciences
43. Origin and function of the major royal jelly proteins of the honeybee (Apis mellifera) as members of the yellow gene family
    Anja Buttstedt, Robin F. A. Moritz, Silvio Erler · 2013 · Biological reviews/Biological reviews of the Cambridge Philosophical Society
44. Intercellular chaperone transmission via exosomes contributes to maintenance of protein homeostasis at the organismal level
    Toshihide Takeuchi, Mari Suzuki, Nobuhiro Fujikake, H. Akiko Popiel, Hisae Kikuchi, Shiroh Futaki, Keiji Wada, Yoshitaka Nagai · 2015 · Proceedings of the National Academy of Sciences
45. A major lineage of non-tailed dsDNA viruses as unrecognized killers of marine bacteria
    Kathryn M. Kauffman, Fatima A. Hussain, Joy Yang, Philip Arevalo, Julia M. Brown, William K. Chang, David VanInsberghe, Joseph Elsherbini, Radhey Shyam Sharma, Michael Cutler et al. · 2018 · Nature
46. Comparative Proteomic Analysis of the Mesenchymal Stem Cells Secretome from Adipose, Bone Marrow, Placenta and Wharton’s Jelly
    Sungho Shin, Jeongmin Lee, Yu Mi Kwon, Kang-Sik Park, Jae‐Hoon Jeong, Suk‐Joo Choi, Sa Ik Bang, Jong Wook Chang, Cheolju Lee · 2021 · International Journal of Molecular Sciences
47. Antimicrobial peptides: an alternative for innovative medicines?
    João Pinto da Costa, Marta Mendonça Cova, Rita M. Ferreira, Rui Miguel Pinheiro Vitorino · 2015 · Applied Microbiology and Biotechnology
48. Predicting the HMA-LMA Status in Marine Sponges by Machine Learning
    Lucas Moitinho‐Silva, Georg Steinert, Shaun J. Nielsen, Cristiane Cassiolato Pires Hardoim, Yu-Chen Wu, Grace P. McCormack, Susanna López‐Legentil, Román Marchant, Nicole S. Webster, Torsten Thomas et al. · 2017 · Frontiers in Microbiology
49. A Small Secreted Virulence-Related Protein Is Essential for the Necrotrophic Interactions of Sclerotinia sclerotiorum with Its Host Plants
    Xueliang Lyu, Cuicui Shen, Yànpíng Fù, Jiǎtāo Xiè, Dàohóng Jiāng, Guoqing Li, Jiāsēn Chéng · 2016 · PLoS Pathogens
50. Pangenome analyses of the wheat pathogen Zymoseptoria tritici reveal the structural basis of a highly plastic eukaryotic genome
    Clémence Plissonneau, Fanny E. Hartmann, Daniel Croll · 2018 · BMC Biology
51. The crown-of-thorns starfish genome as a guide for biocontrol of this coral reef pest
    Michael R. Hall, Kevin M. Kocot, Kenneth W. Baughman, Selene L. Fernández-Valverde, Marie E. A. Gauthier, William L. Hatleberg, Arunkumar Krishnan, Carmel McDougall, Cherie Ann Motti, Eiichi Shoguchi et al. · 2017 · Nature
52. Identification of Maturation-Specific Proteins by Single-Cell Proteomics of Human Oocytes
    Irma Virant‐Klun, Stefan Leicht, Christopher Hughes, Jeroen Krijgsveld · 2016 · Molecular & Cellular Proteomics
53. Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi
    Dániel G. Knapp, Julianna B. Németh, Kerrie Barry, Matthieu Hainaut, Bernard Henrissat, Jenifer Johnson, Alan Kuo, Joanne Lim, Anna Lipzen, Matt Nolan et al. · 2018 · Scientific Reports
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    Ido Yofe, Uri Weill, Matthias Meurer, Silvia Gabriela Chuartzman, Einat Zalckvar, Omer Goldman, Shifra Ben‐Dor, Conny Schütze, Nils Wiedemann, Michael Knop et al. · 2016 · Nature Methods
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    Mari Häkkinen, Mikko Arvas, Merja Oja, Nina Aro, Merja E. Penttilä, Markku Saloheimo, Tiina Pakula · 2012 · Microbial Cell Factories
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    Lili Zhang, Huaiqiang Zhang, Zhiheng Wang, Guanjun Chen, Lushan Wang · 2015 · Bioresource Technology
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    Pornchai Kaewsapsak, David M Shechner, William Mallard, John L. Rinn, Alice Y. Ting · 2017 · eLife
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    John R. Prensner, Oana M. Enache, Victor Luria, Karsten Krug, Karl R. Clauser, Joshua M. Dempster, Amir Karger, Li Wang, Karolina Stumbraite, Vickie M. Wang et al. · 2021 · Nature Biotechnology
59. Candidate Olfaction Genes Identified within the Helicoverpa armigera Antennal Transcriptome
    Yang Liu, Shaohua Gu, Yongjun Zhang, Yuyuan Guo, Guirong Wang · 2012 · PLoS ONE
60. Genome sequence of Valsa canker pathogens uncovers a potential adaptation of colonization of woody bark
    Zhiyuan Yin, Huiquan Liu, Zhengpeng Li, Xiwang Ke, Daolong Dou, Xiaoning Gao, Na Song, Qingqing Dai, Yuxing Wu, Jin‐Rong Xu et al. · 2015 · New Phytologist
61. ApoplastP : prediction of effectors and plant proteins in the apoplast using machine learning
    Jana Sperschneider, Peter N. Dodds, Karam B. Singh, Jennifer M. Taylor · 2017 · New Phytologist
62. Host-Induced Gene Silencing in Barley Powdery Mildew Reveals a Class of Ribonuclease-Like Effectors
    Clara Pliego, Daniela Nowara, Giulia Bonciani, Dana M. Gheorghe, Ruo Xu, Priyanka Surana, Ehren Whigham, Dan S. Nettleton, Adam Joseph Bogdanove, Roger P. Wise et al. · 2013 · Molecular Plant-Microbe Interactions
63. Reduction and Expansion in Microsporidian Genome Evolution: New Insights from Comparative Genomics
    Sirintra Nakjang, Tom A. Williams, Eva Heinz, Andrew Watson, Peter Gordon Foster, Kacper M. Sendra, Sarah E. Heaps, Robert P. Hirt, T. Martin Embley · 2013 · Genome Biology and Evolution
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    Eichenberger, Ramon M., Ryan, Stephanie, Jones, Linda, Buitrago, Geraldine, Polster, Ramona, Montes de Oca, Marcela, Zuvelek, Jennifer, Giacomin, Paul R., Dent, Lindsay A., Engwerda, Christian R. et al. · 2018 · Frontiers in Immunology
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    Boqiang Li, Yuanyuan Zong, Zhenglin Du, Yong Chen, Zhanquan Zhang, Guozheng Qin, Wenming Zhao, Shiping Tian · 2015 · Molecular Plant-Microbe Interactions
66. An update on sORFs.org: a repository of small ORFs identified by ribosome profiling
    Volodimir Olexiouk, Wim Van Criekinge, Gerben Menschaert · 2017 · Nucleic Acids Research
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    Lindsey Solden, Adrian E. Naas, Simon Roux, Rebecca A. Daly, William Collins, Carrie Nicora, Samuel Owen Purvine, David W Hoyt, Julia Schückel, Bodil Jørgensen et al. · 2018 · Nature Microbiology
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    Helena Safavi-­Hemami, Joanna Gajewiak, Santhosh Karanth, Samuel D. Robinson, Beatrix M. Ueberheide, Adam D. Douglass, Amnon Schlegel, Julita S. Imperial, Maren Watkins, Pradip K. Bandyopadhyay et al. · 2015 · Proceedings of the National Academy of Sciences
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70. A fungal wheat pathogen evolved host specialization by extensive chromosomal rearrangements
    Fanny E. Hartmann, Andrea Sánchez‐Vallet, Bruce Alan McDonald, Daniel Croll · 2017 · The ISME Journal
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    Yansheng Liu, Jing Chen, Atul Sethi, Qing K. Li, Lijun Chen, Ben C. Collins, Ludovic C. J. Gillet, Bernd Wollscheid, Hui Zhang, Ruedi H. Aebersold · 2014 · Molecular & Cellular Proteomics
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    Atsushi Iguchi, Yutaka Nagaya, Elizabeth Pradel, Tadasuke Ooka, Yoshitoshi Ogura, Keisuke Katsura, Ken Kurokawa, Kenshiro Oshima, Masahira Hattori, Julian Parkhill et al. · 2014 · Genome Biology and Evolution
73. Host specialization of the blast fungus Magnaporthe oryzae is associated with dynamic gain and loss of genes linked to transposable elements
    Kentaro Yoshida, Diane G. O. Saunders, Chikako Mitsuoka, Satoshi Natsume, Shunichi Kosugi, Hiromasa Saitoh, Yoshihiro Inoue, Izumi Chuma, Yukio Tosa, Liliana M. Cano et al. · 2016 · BMC Genomics
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    György Sipos, Arun N. Prasanna, Mathias C. Walter, Eoin O’Connor, Balázs Bálint, Krisztina Krizsán, Brigitta Kiss, Jaqueline Hess, Torda Varga, Jason C. Slot et al. · 2017 · Nature Ecology & Evolution
75. Loss of the nodule-specific cysteine rich peptide, NCR169, abolishes symbiotic nitrogen fixation in the Medicago truncatula dnf7 mutant
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    Christopher A. Desjardins, Gustavo Cerqueira, Jonathan M. Goldberg, Julie C. Dunning Hotopp, Brian J. Haas, Jeremy Zucker, José M. C. Ribeiro, Sakina Saif, Joshua Z. Levin, Lin Fan et al. · 2013 · Nature Genetics
77. Distinctive expansion of gene families associated with plant cell wall degradation, secondary metabolism, and nutrient uptake in the genomes of grapevine trunk pathogens
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78. Metagenomic analysis reveals a dynamic microbiome with diversified adaptive functions to utilize high lignocellulosic forages in the cattle rumen
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79. Transcriptome analysis of root‐knot nematode ( Meloidogyne incognita )‐infected tomato ( Solanum lycopersicum ) roots reveals complex gene expression profiles and metabolic networks of both host and nematode during susceptible and resistance responses
    Neha Shukla, Rachita Yadav, Pritam Kaur, Simon Rasmussen, Shailendra Goel, Manu Agarwal, Arun Jagannath, Ramneek Gupta, Amar Kumar · 2017 · Molecular Plant Pathology
80. The tomato I‐3 gene: a novel gene for resistance to Fusarium wilt disease
    Ann‐Maree Catanzariti, Gahyun Lim, David A. Jones · 2015 · New Phytologist
81. Sialidases and fucosidases of Akkermansia muciniphila are crucial for growth on mucin and nutrient sharing with mucus-associated gut bacteria
    Bashar Shuoker, Michael Jakob Pichler, Chunsheng Jin, Hiroka Sakanaka, Haiyang Wu, Ana Martínez Gascueña, Jining Liu, Tine Sofie Nielsen, Jan Holgersson, Eva Nordberg Karlsson et al. · 2023 · Nature Communications
82. Signatures of host specialization and a recent transposable element burst in the dynamic one-speed genome of the fungal barley powdery mildew pathogen
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83. A bioinformatic study of antimicrobial peptides identified in the Black Soldier Fly (BSF) Hermetia illucens (Diptera: Stratiomyidae)
    Antonio Moretta, Rosanna Salvia, Carmen Scieuzo, Angela Di Somma, Heiko Vogel, Piero Pucci, Alessandro Sgambato, Michael Werner Wolff, Patrizia Falabella · 2020 · Scientific Reports
84. PathoFact: a pipeline for the prediction of virulence factors and antimicrobial resistance genes in metagenomic data
    Laura de Nies, Sara Lopes, Susheel Bhanu Busi, Valentina Galata, Anna Heintz‐Buschart, Cedric Christian Laczny, Patrick May, Paul Wilmes · 2021 · Microbiome
85. A chitin deacetylase from the endophytic fungus Pestalotiopsis sp. efficiently inactivates the elicitor activity of chitin oligomers in rice cells
    Stefan Cord‐Landwehr, Rebecca L. J. Melcher, Stephan Kolkenbrock, Bruno Maria Moerschbacher · 2016 · Scientific Reports
86. Massive gene presence-absence variation shapes an open pan-genome in the Mediterranean mussel
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87. A Recommended Numbering Scheme for Influenza A HA Subtypes
    David F. Burke, Derek J. Smith · 2014 · PLoS ONE
88. Repairing oxidized proteins in the bacterial envelope using respiratory chain electrons
    Alexandra Gennaris, Benjamin Ezraty, Camille Henry, Rym Agrebi, Alexandra Vergnes, Emmanuel Oheix, Julia Bos, Pauline Leverrier, Léon Espinosa, Joanna Szewczyk et al. · 2015 · Nature
89. Adaptive genomic structural variation in the grape powdery mildew pathogen, Erysiphe necator
    Laura Jones, Summaira Riaz, Abraham Morales‐Cruz, Katherine C. H. Amrine, Brianna McGuire, Walter Douglas Gubler, Michael Andrew Walker, Dario Cantù · 2014 · BMC Genomics
90. Brittle Culm1, a COBRA-Like Protein, Functions in Cellulose Assembly through Binding Cellulose Microfibrils
    Lifeng Liu, Keke Shang‐Guan, Baocai Zhang, Xiangling Liu, Meixian Yan, Lanjun Zhang, Yanyun Shi, Mu Zhang, Qian Qian, Jiayang Li et al. · 2013 · PLoS Genetics
91. Synergistic Action of a Metalloprotease and a Serine Protease from Fusarium oxysporum f. sp. lycopersici Cleaves Chitin-Binding Tomato Chitinases, Reduces Their Antifungal Activity, and Enhances Fungal Virulence
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92. Knockdown of nuclease activity in the gut enhances RNAi efficiency in the Colorado potato beetle, Leptinotarsa decemlineata, but not in the desert locust, Schistocerca gregaria
    Jornt Spit, Annelies Philips, Niels Wynant, Dulce Santos, Geert Plaetinck, Jozef Vanden Broeck · 2017 · Insect Biochemistry and Molecular Biology
93. Advances and Challenges in Computational Prediction of Effectors from Plant Pathogenic Fungi
    Jana Sperschneider, Peter N. Dodds, Donald Max Gardiner, John M. Manners, Karam B. Singh, Jennifer M. Taylor · 2015 · PLoS Pathogens
94. Global Genome and Transcriptome Analyses of Magnaporthe oryzae Epidemic Isolate 98-06 Uncover Novel Effectors and Pathogenicity-Related Genes, Revealing Gene Gain and Lose Dynamics in Genome Evolution
    Yanhan Dong, Ying Li, Miaomiao Zhao, Maofeng Jing, Xinyu Liu, Muxing Liu, Xianxian Guo, Xing Zhang, Yue Chen, Yongfeng Liu et al. · 2015 · PLoS Pathogens
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