SignalP 4.0: discriminating signal peptides from transmembrane regions
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- A Rapid Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry-Based Method for Single-Plasmid Tracking in an Outbreak of Carbapenem-Resistant EnterobacteriaceaeAnna F. Lau, Honghui Wang, Rebecca A. Weingarten, Steven K. Drake, Anthony F. Suffredini, Mark K. Garfield, Yong Chen, Marjan Guček, Jung-Ho Youn, Frida Stock et al. · 2014 · Journal of Clinical Microbiology
- The Evolution of Venom by Co-option of Single-Copy GenesEllen O. Martinson, Mrinalini, Yogeshwar Kelkar, Ching-Ho Chang, John H. Werren · 2017 · Current Biology
- APPRIS 2017: principal isoforms for multiple gene setsJosé Manuel Rodrı́guez, Juan Rodriguez-Rivas, Tomás Di Domenico, Jesús Vázquez, Alfonso Valencia, Michael L. Tress · 2017 · Nucleic Acids Research
- A fungal avirulence factor encoded in a highly plastic genomic region triggers partial resistance to septoria tritici blotchLukas Meile, Daniel Croll, Patrick C. Brunner, Clémence Plissonneau, Fanny E. Hartmann, Bruce Alan McDonald, Andrea Sánchez‐Vallet · 2018 · New Phytologist
- A genetic system for Akkermansia muciniphila reveals a role for mucin foraging in gut colonization and host sterol biosynthesis gene expressionLauren E. Davey, Per N. Malkus, Max M. Villa, Lee Dolat, Zachary C. Holmes, Jeffrey Letourneau, Eduard Ansaldo, Lawrence A. David, Gregory M. Barton, Raphael H. Valdivia · 2023 · Nature Microbiology
- Contrasting Roles of the Apoplastic Aspartyl Protease APOPLASTIC, ENHANCED DISEASE SUSCEPTIBILITY1-DEPENDENT1 and LEGUME LECTIN-LIKE PROTEIN1 in Arabidopsis Systemic Acquired Resistance ,Heiko H. Breitenbach, Marion Wenig, Finni Wittek, Lucía Jordá, Ana María Maldonado-Alconada, Hakan Sarioglu, Thomas Colby, Claudia Knappe, Marlies Bichlmeier, Elisabeth Pabst et al. · 2014 · PLANT PHYSIOLOGY
- IGSF10 mutations dysregulate gonadotropin‐releasing hormone neuronal migration resulting in delayed pubertySasha Rose Howard, Leonardo Guasti, Gerard Ruiz‐Babot, Alessandra Mancini, Alessia David, Helen Louise Storr, Louise Metherell, Michael J.E. Sternberg, Claudia Cabrera, Helen R. Warren et al. · 2016 · EMBO Molecular Medicine
- Global landscape of cell envelope protein complexes in Escherichia coliMohan Babu, Cedoljub Bundalovic-Torma, Charles Calmettes, Sadhna Phanse, Qingzhou Zhang, Yue Jiang, Zoran Minić, Sun‐Young Kim, Jitender Mehla, Alla G. Gagarinova et al. · 2017 · Nature Biotechnology
- EvolutionaryGenomics of Salmonellaenterica SubspeciesPrerak Desai, Steffen Porwollik, Fred Long, Pui Cheng, Aye Wollam, Sandra W. Clifton, George M. Weinstock, Michael McClelland · 2013 · mBio
- Oral transfer of chemical cues, growth proteins and hormones in social insectsAdria C. LeBoeuf, Patrice Waridel, Colin S. Brent, André N. A. Gonçalves, Laure Menin, Daniel Ortiz, Oksana Riba‐Grognuz, Akiko Koto, Zamira Guerra Soares, Eyal Privman et al. · 2016 · eLife
- Structural and Functional Annotation of Eukaryotic Genomes with GenSASJodi L. Humann, Taein Lee, Stephen Patrick Ficklin, Dorrie Main · 2019 · Methods in molecular biology
- Assembly Mechanism of Mucin and von Willebrand Factor PolymersGabriel Javitt, Lev Khmelnitsky, Lis Albert, Lavi S. Bigman, Nadav Elad, David Morgenstern, Tal Ilani, Yaakov Levy, Ron Diskin, Deborah Fass · 2020 · Cell
- A Comparison of the Olfactory Gene Repertoires of Adults and Larvae in the Noctuid Moth Spodoptera littoralisErwan Poivet, Aurore Gallot, Nicolas Montagné, Nicolas Glaser, Fabrice Legeai, Emmanuelle Jacquin‐Joly · 2013 · PLoS ONE
- Functional Diversity of Carbohydrate-Active Enzymes Enabling a Bacterium to Ferment Plant BiomassMagali Boutard, Tristan Cerisy, Pierre-Yves Nogue, Adriana Alberti, Jean Weissenbach, Marcel Salanoubat, Andrew C. Tolonen · 2014 · PLoS Genetics
- Building the sugarcane genome for biotechnology and identifying evolutionary trendsNathalia de Setta, Cláudia Barros Monteiro-Vitorello, Cushla J. Metcalfe, Guilherme M. Q. Cruz, Luiz‐Eduardo Del‐Bem, Renato Vicentini, Fábio Tebaldi Silveira Nogueira, Roberta Alvares Campos, Sideny Lima Nunes, Paula C. G. Turrini et al. · 2014 · BMC Genomics
- Rescue of Pompe disease in mice by AAV-mediated liver delivery of secretable acid α-glucosidaseFrancesco Puzzo, Pasqualina Colella, Maria Grazia Biferi, Deeksha Sarihyan Bali, Nicole K. Paulk, Patrice Vidal, Fanny Collaud, Marcelo Simon Sola, Séverine Charles, Romain Hardet et al. · 2017 · Science Translational Medicine
- The Apoplastic Secretome of Trichoderma virens During Interaction With Maize Roots Shows an Inhibition of Plant Defence and Scavenging Oxidative Stress Secreted ProteinsGuillermo Nogueira-López, David R. Greenwood, Martin Middleditch, Christopher S. Winefield, Carla Jane Eaton, Johanna M. Steyaert, Artemio Mendoza‐Mendoza · 2018 · Frontiers in Plant Science
- New secreted toxins and immunity proteins encoded within the T ype VI secretion system gene cluster of S erratia marcescensGrant English, Katharina Trunk, Vincenzo A. Rao, Srikannathasan Velupillai, William N. Hunter, Sarah J. Coulthurst · 2012 · Molecular Microbiology
- Systems Analysis of Lactose Metabolism in Trichoderma reesei Identifies a Lactose Permease That Is Essential for Cellulase InductionChrista Ivanova, Jenny Arnling Bååth, Bernhard Seiboth, Christian Peter Kubicek · 2013 · PLoS ONE
- Quantitative Phosphoproteomic Analysis of Soybean Root Hairs Inoculated with Bradyrhizobium japonicumTran H. Nguyen, Laurent Brechenmacher, Joshua T. Aldrich, Therese RW Clauss, Marina A. Gritsenko, Kim K. Hixson, Marc Libault, Kiwamu Tanaka, Feng Yang, Qiuming Yao et al. · 2012 · Molecular & Cellular Proteomics
- Overview of a Surface-Ripened Cheese Community Functioning by Meta-Omics AnalysesÉric Dugat‐Bony, Cécile Straub, Aurélie Teissandier, Djamila Onésime, Valentin Loux, Christophe Monnet, Françoise Irlinger, Sophie Landaud, M.-N. Leclercq-Perlat, Pascal Bento et al. · 2015 · PLoS ONE
- Host-Microbe Protein Interactions during Bacterial InfectionDevin K. Schweppe, Christopher L. Harding, Juan D. Chavez, Xia Wu, Elizabeth R. Ramage, Pradeep Kumar Singh, Colin Manoil, James E. Bruce · 2015 · Chemistry & Biology
- Searching the Evolutionary Origin of Epithelial Mucus Protein Components—Mucins and FCGBPTiange Lang, Sofia Klasson, Erik Larsson, Malin Johansson, Gunnar C. Hansson, Tore Samuelsson · 2016 · Molecular Biology and Evolution
- The Evolution of Orphan Regions in Genomes of a Fungal Pathogen of WheatClémence Plissonneau, Alessandra Stürchler, Daniel Croll · 2016 · mBio
- Genome-Wide Identification of Medicago Peptides Involved in Macronutrient Responses and NodulationThomas C. de Bang, Peter Knut Lundquist, Xinbin Dai, Clarissa Boschiero, Zhaohong Zhuang, Pooja Pant, Ivone Torres‐Jerez, Sonali Roy, Joaquina Nogales, Vijaykumar Veerappan et al. · 2017 · PLANT PHYSIOLOGY
- Transcriptomic variation of hepatopancreas reveals the energy metabolism and biological processes associated with molting in Chinese mitten crab, Eriocheir sinensisShu Huang, Jun Wang, Wucheng Yue, Jiao Chen, Sarah Gaughan, Weiqun Lu, Guoqing Lu, Chenghui Wang · 2015 · Scientific Reports
- Prioritization of potential vaccine targets using comparative proteomics and designing of the chimeric multi-epitope vaccine against Pseudomonas aeruginosaVandana Solanki, Monalisa Tiwari, Vishvanath Tiwari · 2019 · Scientific Reports
- Computational Prediction of Effector Proteins in Fungi: Opportunities and ChallengesHumira Sonah, Rupesh Kailasrao Deshmukh, Richard R. Bélanger · 2016 · Frontiers in Plant Science
- An integrated genomic and transcriptomic survey of mucormycosis-causing fungiMarcus C. Chibucos, Sameh S. M. Soliman, Teclegiorgis Gebremariam, Hong-Kyu Lee, Sean C. Daugherty, Joshua Orvis, Amol Carl Shetty, Jonathan Crabtree, Tracy H. Hazen, Kizee A. Etienne et al. · 2016 · Nature Communications
- A modular effector with a DNase domain and a marker for T6SS substratesBiswanath Jana, Chaya Mushka Fridman, Eran Bosis, Dor Salomon · 2019 · Nature Communications
- AvrPm2 encodes an RN ase‐like avirulence effector which is conserved in the two different specialized forms of wheat and rye powdery mildew fungusCoraline Rosalie Praz, Salim Bourras, Fansong Zeng, Javier Sánchez‐Martín, Fabrizio Menardo, Minfeng Xue, Lijun Yang, Stefan Roffler, Rainer Böni, Gerard Herren et al. · 2016 · New Phytologist
- VLDLR and ApoER2 are receptors for multiple alphavirusesLars E. Clark, Sarah A. Clark, ChieYu Lin, Jianying Liu, Adrian Coscia, Katherine Nabel Smith, Pan Yang, Dylan V. Neel, Hyo Lee, Vesna Brusic et al. · 2021 · Nature
- Elongation factor Tu is a multifunctional and processed moonlighting proteinWidjaja, Michael, Harvey, Kate Louise, Hagemann, Lisa, Berry, Iain James, Jarocki, Veronica Maria, Raymond, Benjamin Bernard Armando, Tacchi, Jessica Leigh, Gründel, Anne, Steele, Joel Ricky, Padula, Matthew Paul et al. · 2017 · Scientific Reports
- Quo Vadis Venomics? A Roadmap to Neglected Venomous InvertebratesBjörn M. von Reumont, Lahcen I. Campbell, Ronald A. Jenner · 2014 · Toxins
- Analysis of the Secretome of Apoptotic Peripheral Blood Mononuclear Cells: Impact of Released Proteins and Exosomes for Tissue RegenerationLucian Beer, Matthias Zimmermann, Andreas Mitterbauer, Adolf Ellinger, Флориан Грубер, Marie‐Sophie Narzt, Maria Zellner, Mariann Gyöngyösi, Sibylle Madlener, Elisabeth Simader et al. · 2015 · Scientific Reports
- Immunoinformatics design of a novel epitope-based vaccine candidate against dengue virusAdewale Oluwaseun Fadaka, Nicole Remaliah Samantha Sibuyi, Darius Riziki Martin, Mediline Goboza, Ashwil Klein, Abram Madimabe Madiehe, Mervin Meyer · 2021 · Scientific Reports
- Metabolic engineering of volatile isoprenoids in plants and microbesClaudia Estelle Vickers, Mareike Bongers, Qing Liu, Thierry Delatte, Harro J. Bouwmeester · 2014 · Plant Cell & Environment
- Optimisation of signal peptide for recombinant protein secretion in bacterial hostsLow, Kheng Oon, Muhammad Mahadi, Nor, Md. Illias, Rosli · 2013 · Applied Microbiology and Biotechnology
- Quantification of the N-glycosylated Secretome by Super-SILAC During Breast Cancer Progression and in Human Blood SamplesPaul J. Boersema, Tamar Geiger, Jacek R. Wiśniewski, Matthias Mann · 2012 · Molecular & Cellular Proteomics
- An Intracellular Laccase is Responsible for the Epicatechin Mediated Anthocyanin Degradation in Litchi Fruit PericarpFang Fang, Xuelian Zhang, Honghui Luo, Jiajian Zhou, Yihui Gong, Wen‐Jun Li, Zhaowan Shi, Quan He, Qing Yu Wu, Lü Li et al. · 2015 · PLANT PHYSIOLOGY
- Class of cyclic ribosomal peptide synthetic genes in filamentous fungiNozomi Nagano, Myco Umemura, Miho Izumikawa, Jin Kawano, Tomoko Ishii, Moto Kikuchi, Kentaro Tomii, Toshitaka Kumagai, Akira Yoshimi, Masayuki Machida et al. · 2015 · Fungal Genetics and Biology
- Functional analysis of a pathogenesis-related thaumatin-like protein gene TaLr35PR5 from wheat induced by leaf rust fungusJiarui Zhang, Fei Wang, Fang Liang, Yanjun Zhang, Lisong Ma, Haiyan Wang, Daqun Liu · 2018 · BMC Plant Biology
- Comparative Analysis of the Peanut Witches'-Broom Phytoplasma Genome Reveals Horizontal Transfer of Potential Mobile Units and EffectorsWan-Chia Chung, Ling‐Ling Chen, Wen‐Sui Lo, Chan‐Pin Lin, Chih‐Horng Kuo · 2013 · PLoS ONE
- Functional genomics reveals that Clostridium difficileSpo0A coordinates sporulation, virulence and metabolismLaura J Pettit, Hilary P. Browne, Lu Yu, Wiep Klaas Smits, Robert P. Fagan, Lars Barquist, Melissa J. Martin, David Goulding, Sylvia H. Duncan, Harry James Flint et al. · 2014 · BMC Genomics
- Apicomplexan-like parasites are polyphyletic and widely but selectively dependent on cryptic plastid organellesJanouškovec, Jan, Paskerova, Gita G, Miroliubova, Tatiana S, Mikhailov, Kirill V, Birley, Thomas, Aleoshin, Vladimir V, Simdyanov, Timur G · 2019 · eLife
- Diversity of Conotoxin Gene Superfamilies in the Venomous Snail, Conus victoriaeSamuel D. Robinson, Helena Safavi-Hemami, Lachlan McIntosh, Anthony Wayne Purcell, Raymond S. Norton, Anthony T. Papenfuss · 2014 · PLoS ONE
- Proteomic Analysis of Cow, Yak, Buffalo, Goat and Camel Milk Whey Proteins: Quantitative Differential Expression PatternsYongxin Yang, Dengpan Bu, Xiaowei Zhao, Peng Sun, Jiaqi Wang, Lingyun Zhou · 2013 · Journal of Proteome Research
- The genome sequence and effector complement of the flax rust pathogen Melampsora liniAdnane Nemri, Diane G. O. Saunders, Claire Anderson, Narayana M. Upadhyaya, Joe Win, Gregory J. Lawrence, David A. Jones, Sophien Kamoun, Jeffrey G. Ellis, Peter N. Dodds · 2014 · Frontiers in Plant Science
- Transcriptional Orchestration of the Global Cellular Response of a Model Pennate Diatom to Diel Light Cycling under Iron LimitationSarah R. Smith, Jeroen Gillard, Adam B. Kustka, John P. McCrow, Jonathan H. Badger, Hong Zheng, Ashley M. New, Christopher L. Dupont, Toshihiro Obata, Alisdair Robert Fernie et al. · 2016 · PLoS Genetics
- Decay of the glycolytic pathway and adaptation to intranuclear parasitism within Enterocytozoonidae microsporidiaDominic Wiredu Boakye, Pattana Jaroenlak, Anuphap Prachumwat, Tom A. Williams, Kelly S. Bateman, Ornchuma Itsathitphaisarn, Kallaya Sritunyalucksana, Konrad H. Paszkiewicz, Karen Moore, Grant D. Stentiford et al. · 2017 · Environmental Microbiology
- The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerataDaniele Armaleo, Olaf Müller, Francois M. Lutzoni, Ólafur S. Andrésson, Guillaume Blanc, Helge B. Bode, F. Collart, Francesco Dal Grande, Fred S. Dietrich, Igor V. Grigoriev et al. · 2019 · BMC Genomics
- Cellular Interactions in the Tumor Microenvironment: The Role of SecretomeBianca Rodrigues da Cunha, Célia Domingos, Ana Carolina Buzzo Stefanini, Tiago Henrique, Giovana Mussi Polachini, Pedro Castelo‐Branco, Eloíza H. Tajara · 2019 · Journal of Cancer
- Adropin Is a Brain Membrane-bound Protein Regulating Physical Activity via the NB-3/Notch Signaling Pathway in MiceChi‐Ming Wong, Yudong Wang, Jimmy Tsz Hang Lee, Zhe Ping Huang, Donghai Wu, Aimin Xu, Karen S.L. Lam · 2014 · Journal of Biological Chemistry
- A secretomic view of woody and nonwoody lignocellulose degradation by Pleurotus ostreatusElena Fernández‐Fueyo, Francisco Javier Ruiz-Dueñas, María F. López-Lucendo, Marta Pérez-Boada, Jorge Rencoret, Ana Gutiérrez, Antonio G. Pisabarro, Lucı́a Ramı́rez, Ángel T. Martı́nez · 2016 · Biotechnology for Biofuels
- Genome-Scale Metabolic Model for the Green Alga Chlorella vulgaris UTEX 395 Accurately Predicts Phenotypes under Autotrophic, Heterotrophic, and Mixotrophic Growth ConditionsCristal Zúñiga, Chien‐Ting Li, Tyler Huelsman, Jennifer Levering, Daniel Craig Zielinski, Brian O. McConnell, Christopher P. Long, Eric P. Knoshaug, Michael Thomas Guarnieri, Maciek R. Antoniewicz et al. · 2016 · PLANT PHYSIOLOGY
- TonB-Dependent Receptor Repertoire of Pseudomonas aeruginosa for Uptake of Siderophore-Drug ConjugatesAlexandre Lüscher, L. Moynié, Pamela Saint Auguste, Dirk Bumann, Léna Mazza, Daniel Pletzer, James H. Naismith, Thilo Köhler · 2018 · Antimicrobial Agents and Chemotherapy
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- Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplanktonSarahi L. Garcia, Katherine D. McMahon, Manuel Martínez‐García, Abhishek Srivastava, Alexander Sczyrba, Ramūnas Stepanauskas, Hans‐Peter Grossart, Tanja Woyke, Falk Warnecke · 2012 · The ISME Journal
- The Salivary Protein Repertoire of the Polyphagous Spider Mite Tetranychus urticae: A Quest for EffectorsWim Jonckheere, Wannes Dermauw, Vladimir Zhurov, Nicky Wybouw, Jan Van den Bulcke, Carlos A. Villarroel, Robert Greenhalgh, Mike Grbić, Rob Schuurink, Luc Tirry et al. · 2016 · Molecular & Cellular Proteomics
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- CRISPR/Cas9-mediated genome editing reveals 30 testis-enriched genes dispensable for male fertility in mice†Yonggang Lu, Seiya Oura, Takafumi Matsumura, Asami Oji, Nobuyuki Sakurai, Yoshitaka Fujihara, Keisuke Shimada, Haruhiko Miyata, Tomohiro Tobita, Taichi Noda et al. · 2019 · Biology of Reproduction
- Genomes and Transcriptomes of Partners in Plant-Fungal- Interactions between Canola (Brassica napus) and Two Leptosphaeria SpeciesRohan G. T. Lowe, Andrew M. Cassin, Jonathan Grandaubert, Bethany L. Clark, Angela P. Van de Wouw, Thierry Rouxel, Barbara J. Howlett · 2014 · PLoS ONE
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