Counting absolute numbers of molecules using unique molecular identifiers
Kivioja, Teemu, Vähärautio, Anna, Karlsson, Kasper, Bonke, Martin, Enge, Martin, Linnarsson, Sten, Taipale, Jussi·2012·Nature Methods
Cited by (1,001)
Items 501–600 of 1,001
- A highly sensitive and accurate gene expression analysis by sequencing (“bead-seq”) for a single cellHiroko Matsunaga, Mari Goto, Koji Arikawa, Masataka Shirai, Hiroyuki Tsunoda, Huan Huang, Hideki Kambara · 2014 · Analytical Biochemistry
- Intra-host changes in Kaposi sarcoma-associated herpesvirus genomes in Ugandan adults with Kaposi sarcomaJ. C. Santiago, Jason D. Goldman, Hong Zhao, A. Pankow, F. Okuku, Michael W. Schmitt, Lennie H. Chen, C. A. Hill, C. Casper, W. Phipps et al. · 2021 · PLoS Pathogens
- Single‐Cell Transcriptomic AnalysisZhihong Zheng, Enguo Chen, Weiguo Lü, Gary Charles Mouradian, Matthew Robert Hodges, Mingyu Liang, Pengyuan Liu, Yan Lü · 2020 · Comprehensive physiology
- Nanopore-based consensus sequencing enables accurate multimodal tumor cell-free DNA profilingLi‐Ting Chen, Myrthe Jager, Dàmi Rebergen, Geertruid Johanna Brink, Tom van den Ende, Willem Vanderlinden, Pauline J. Kolbeck, Marc Pagès-Gallego, Ymke van der Pol, Nicolle J.M. Besselink et al. · 2025 · Genome Research
- Genomic analyses overturn two long-standing homoploid hybrid speciation hypothesesGoulet‐Scott, Benjamin E., Garner, Austin G., Hopkins, Robin · 2021 · Evolution
- Guide for library design and bias correction for large-scale transcriptome studies using highly multiplexed RNAseq methodsShintaro Katayama, Tiina Skoog, Cilla Söderhäll, Elísabet Einarsdóttir, Kaarel Krjutškov, Juha Kere · 2019 · BMC Bioinformatics
- Gene regulatory patterning codes in early cell fate specification of the C. elegans embryoAlison G. Cole, Tamar Hashimshony, Zhuo Du, Itai Yanai · 2023 · eLife
- Respiratory epithelial cell types, states and fates in the era of single-cell RNA-sequencingOleksandr Dudchenko, José Ordovás-Montañés, Colin D. Bingle · 2023 · Biochemical Journal
- Dynamic changes in the transcriptome and metabolome of pig ovaries across developmental stages and gestationBinyun Pan, Jin Chai, Kaixin Fei, Ting Zheng, Yanzhi Jiang · 2024 · BMC Genomics
- Assaying the epigenome in limited numbers of cellsWilliam James Greenleaf · 2014 · Methods
- Selection of High-Affinity RNA Aptamers That Distinguish between Doxycycline and TetracyclineZachary J. Tickner, Guocai Zhong, Kelly R. Sheptack, Michael Farzan · 2020 · Biochemistry
- Dynamic ASXL1 Exon Skipping and Alternative Circular Splicing in Single Human CellsWinston Lian Chye Koh, Veronica Gonzalez-Pena, Sivaraman Natarajan, Robert Carter, Patrick O. Brown, Charles Gawad · 2016 · PLoS ONE
- DO-RIP-seq to quantify RNA binding sites transcriptome-wideCindo O. Nicholson, Matthew B. Friedersdorf, Laura Simone Bisogno, Jack D. Keene · 2016 · Methods
- Integrating Transcriptomic Data with Mechanistic Systems Pharmacology Models for Virtual Drug Combination TrialsAnne Marie Barrette, Mehdi Bouhaddou, Marc R. Birtwistle · 2017 · ACS Chemical Neuroscience
- Bioinformatics Analysis for Cell-Free Tumor DNA Sequencing Data.Shi-Fu Chen, Ming Liu, Yanqing Zhou · 2018 · Methods in molecular biology
- Performance evaluation of commercial library construction kits for PCR-based targeted sequencing using a unique molecular identifierJongsuk Chung, Ki-Wook Lee, Chung Lee, Seung‐Ho Shin, Sungkyu Kyung, Hyo-Jeong Jeon, Sook‐Young Kim, Eun‐Jung Cho, Chang Eun Yoo, Dae‐Soon Son et al. · 2019 · BMC Genomics
- Computational framework for targeted high-coverage sequencing based NIPTHindrek Teder, Priit Paluoja, Kadri Rekker, Andres Salumets, Kaarel Krjutškov, Priit Palta · 2019 · PLoS ONE
- Insufficiently complex unique-molecular identifiers (UMIs) distort small RNA sequencingKlay Saunders, Andrew G. Bert, B. Kate Dredge, John Toubia, Philip A. Gregory, Katherine A. Pillman, Gregory J. Goodall, Cameron P. Bracken · 2020 · Scientific Reports
- Toward uncharted territory of cellular heterogeneity: advances and applications of single-cell RNA-seqBrandon Lieberman, Meena Kusi, Chia‐Nung Hung, Chih‐Wei Chou, He Ning, Yen‐Yi Ho, Josephine Amalia Taverna, Tim H.‐M. Huang, Chun‐Liang Chen · 2020 · Journal of Translational Genetics and Genomics
- A cost-effective sequencing method for genetic studies combining high-depth whole exome and low-depth whole genomeClaude Bhérer, Robert J. M. Eveleigh, Katerina Trajanoska, Janick St-Cyr, Antoine Paccard, Praveen Nadukkalam Ravindran, Elizabeth A. Caron, Nimara Bader Asbah, Peyton McClelland, Clare Wei et al. · 2024 · npj Genomic Medicine
- How low can you go? Pushing the limits of low-input ChIP-seqJohn Arne Dahl, Gregor D. Gilfillan · 2017 · Briefings in Functional Genomics
- Sequencing of human genomes extracted from single cancer cells isolated in a valveless microfluidic deviceRodolphe Marie, Marie Pødenphant, Kamila Koprowska, Loic Bærlocher, Roland C. M. Vulders, Jennifer L. Wilding, Neil Ashley, Simon J. McGowan, Dianne van Strijp, Freek van Hemert et al. · 2018 · Lab on a Chip
- Next-generation sequencing for tumor mutation quantification using liquid biopsiesMariano Provencio, Clara Pérez-Barrios, Miguel Barquín, Virginia Calvo, Fernando Franco, Estela Sánchez‐Herrero, Ricardo Sánchez, Daniel Marsden, Juan Cristóbal Sánchez, Paloma Martín et al. · 2019 · Clinical Chemistry and Laboratory Medicine (CCLM)
- Ribosome clearance during RNA interferenceMakena N. Pule, Marissa L. Glover, Andrew Z. Fire, Joshua A. Arribere · 2019 · RNA
- Zooming in on protein–RNA interactions: a multi-level workflow to identify interaction partnersAlessio Colantoni, Jakob Rupert, Andrea Vandelli, Gian Gaetano Tartaglia, Elsa Zacco · 2020 · Biochemical Society Transactions
- Sharq, A versatile preprocessing and QC pipeline for Single Cell RNA-seqTito Candelli, Philip Lijnzaad, Mauro J. Muraro, Hindrik H. D. Kerstens, Patrick Kemmeren, Alexander van Oudenaarden, Thanasis Margaritis, Frank C. P. Holstege · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
- Relationship between elevated microRNAs and growth factors levels in the vitreous of patients with proliferative diabetic retinopathyJu Guo, Pengyi Zhou, Meng Pan, Zhenhui Liu, Guangqi An, Jinfeng Han, Fangfang Dai, Liping Du, Xuemin Jin · 2021 · Journal of Diabetes and its Complications
- Targeted genomic sequencing of avian influenza viruses in wetland sediment from wild bird habitatsKevin S. Kuchinski, Michelle Coombe, Sarah Mansour, Gabrielle Angelo P. Cortez, Marzieh Kalhor, Chelsea G. Himsworth, Natalie Prystajecky · 2024 · Applied and Environmental Microbiology
- Chasing Sequencing Perfection: Marching Toward Higher Accuracy and Lower CostsHangxing Jia, Shengjun Tan, Yong E. Zhang · 2024 · Genomics Proteomics & Bioinformatics
- Streamlining RNA Aptamer Selection via Unique Molecular Identifiers and High-Throughput SequencingDengwei Zhang, Yuqing Liu, Huidong Huang, Ting Fu, Tao Bing, Xiaoqiu Wu, Weihong Tan · 2024 · Analytical Chemistry
- A transcriptome-wide analysis deciphers distinct roles of G1 cyclins in temporal organization of the yeast cell cycleLotte Teufel, Katja Tummler, Max Flöttmann, Andreas Herrmann, Naama Barkai, Edda Klipp · 2019 · Scientific Reports
- On the critical evaluation and confirmation of germline sequence variants identified using massively parallel sequencingZuzana Kubiritova, Marianna Gyurászová, E. Nagyova, Michaela Hýblová, Mária Haršányová, Jaroslav Budiš, Rastislav Hekel, Juraj Gazdarica, František Ďuriš, Ľudevít Kádaši et al. · 2019 · Journal of Biotechnology
- Anti-bias training for (sc)RNA-seq: experimental and computational approaches to improve precisionPhilip Davies, Matt Jones, Juntai Liu, Daniel Hebenstreit · 2021 · Briefings in Bioinformatics
- Early sample tagging and pooling enables simultaneous SARS-CoV-2 detection and variant sequencingAlon Chappleboim, Daphna Joseph-Strauss, Ayelet Rahat, Israa Sharkia, Miriam Adam, Daniel Kitsberg, Gavriel Fialkoff, Matan Lotem, Omer Gershon, Anna K. Schmidtner et al. · 2021 · Science Translational Medicine
- Berberine Chloride Supplementation Ameliorates Excessive Hepatic Lipid Deposition and Proinflammatory Gene Upregulation in the Soybean-Oil-Based Diet of Juvenile Yellow Drum (Nibea albiflora)Peng Tan, Ligai Wang, Ruiyi Chen, Dongdong Xu · 2022 · Aquaculture Nutrition
- Resolution of the DNA methylation state of single CpG dyads using in silico strand annealing and WGBS dataChenhuan Xu, Victor G. Corces · 2018 · Nature Protocols
- Hidden sequence specificity in loading of single-stranded RNAs onto Drosophila ArgonautesEling Goh, Katsutomo Okamura · 2018 · Nucleic Acids Research
- Needlestack: an ultra-sensitive variant caller for multi-sample next generation sequencing dataTiffany Myriam Delhomme, Patrice Hodonou Avogbe, Aurélie AG Gabriel, Nicolas Alcala, Noémie Leblay, Catherine Voegele, Maxime Vallée, Priscilia Chopard, Amélie Chabrier, Behnoush Abedi‐Ardekani et al. · 2020 · NAR Genomics and Bioinformatics
- T-cell tracking, safety, and effect of low-dose donor memory T-cell infusions after αβ T cell-depleted hematopoietic stem cell transplantationSergey Blagov, Ivan V. Zvyagin, Larisa N. Shelikhova, Rimma Khismatullina, Dmitry Balashov, Ekaterina A. Komech, Viktoria Fomchenkova, Mikhail Shugay, Julia Starichkova, Elena Kurnikova et al. · 2020 · Bone Marrow Transplantation
- Tailoring the resolution of single-cell RNA sequencing for primary cytotoxic T cellsKristiyan Kanev, Patrick Roelli, Ming Wu, Christine Wurmser, Mauro Delorenzi, Michael Walter Pfaffl, Dietmar Zehn · 2021 · Nature Communications
- From Omics to Applications: How Bioinformatics and Multi-Omics Approaches Are Revolutionizing Metal BioleachingRosina Nkuna, Nikwando Mohlomi, Tonderayi Sylvester Matambo · 2026 · Minerals
- MP3RNA‐seq: Massively parallel 3′ end RNA sequencing for high‐throughput gene expression profiling and genotypingJian Chen, Xiangbo Zhang, Fei Yi, Xiang Gao, Weibin Song, Haiming Zhao, Jinsheng Lai · 2021 · Journal of Integrative Plant Biology
- Framework for in vivo T cell screensLauren E. Milling, Samuel C. Markson, Qin Tjokrosurjo, Nicole M. Derosia, Ivy S. L. Streeter, Grant H. Hickok, Ashlyn M. Lemmen, Thao H. Nguyen, Priyamvada Prathima, William Fithian et al. · 2024 · The Journal of Experimental Medicine
- ArCH: improving the performance of clonal hematopoiesis variant calling and interpretationIrenaeus C.C. Chan, Alex Panchot, Evelyn Schmidt, Samantha N. McNulty, Brian J. Wiley, Jie Liu, Kimberly Turner, Lea A. Moukarzel, Wendy S W Wong, Duc Tran et al. · 2024 · Bioinformatics
- Application of Deep Learning for Single Cell Multi-Omics: A State-of-the-Art ReviewShahid Ahmad Wani, Sumeer Ahmad Khan, SMK Quadri · 2025 · Archives of Computational Methods in Engineering
- ChIPulate: A comprehensive ChIP-seq simulation pipelineVishaka Datta, Sridhar S. Hannenhalli, Rahul Siddharthan · 2019 · PLoS Computational Biology
- Dissecting intercellular and intracellular signaling networks with barcoded genetic toolsAlexander Herholt, Vivek Kumar Sahoo, Lukša Popović, Michael C. Wehr, Moritz J. Rossner · 2021 · Current Opinion in Chemical Biology
- HycDemux: a hybrid unsupervised approach for accurate barcoded sample demultiplexing in nanopore sequencingRenmin Han, Junhai Qi, Yang Xue, Xiujuan Sun, Fa Zhang, Xin Gao, Guojun Li · 2023 · Genome biology
- Single-Cell ID-seq Reveals Dynamic BMP Pathway Activation Upstream of the MAF/MAFB-Program in Epidermal DifferentiationRoderick A. P. M. van Eijl, Jessie A.G.L. van Buggenum, Sabine E.J. Tanis, Joost Hendriks, Klaas W. Mulder · 2018 · iScience
- Detection of cooperatively bound transcription factor pairs using ChIP-seq peak intensities and expectation maximizationVishaka Datta, Rahul Siddharthan, Sandeep Krishna · 2018 · PLoS ONE
- Distinct organization of adaptive immunity in the long-lived rodent Spalax galiliMark Izraelson, Maria Metsger, Alexey N. Davydov, Irina A. Shagina, Maria A. Dronina, Anna Obraztsova, D. A. Miskevich, Ilgar Z. Mamedov, Lilia N. Volchkova, Tatiana O. Nakonechnaya et al. · 2021 · Nature Aging
- Copolymerization of single-cell nucleic acids into balls of acrylamide gelSiran Li, Jude Kendall, Sarah Park, Zihua Wang, Joan Alexander, Andrea B. Moffitt, Nissim Ranade, Cassidy Danyko, Bruno Gegenhuber, Stephan Fischer et al. · 2019 · Genome Research
- Circular RNAs in Cardiovascular Disease: Mechanisms, Biomarkers, and Therapeutic FrontiersRudaynah A. Alali, Mohammed Almansori, Chittibabu Vatte, Mohammed S. Akhtar, Seba S. Abduljabbar, Hassan Al-Matroud, Mohammed J. Alnuwaysir, Hasan A. Radhi, Brendan J. Keating, Alawi H. Habara et al. · 2025 · Biomolecules
- Molecule Differentiation Encoding Microscopy to Dissect Dense Biomolecules in Cellular Nanoenvironments below Spatial ResolutionSiyue Fan, Xuegang Li, Huan Liu, Mengying Ye, Yanliang He, Wenhao Fu, Feng Chen, Yongxi Zhao · 2025 · Angewandte Chemie International Edition
- MicroRNA mechanisms instructing Purkinje cell specificationNorjin Zolboot, Yao Xiao, Jessica X Du, Marwan M. Ghanem, Su Yeun Choi, Miranda J. Junn, Federico Zampa, Zeyi Huang, Ian J. MacRae, Giordano Lippi · 2023 · Neuron
- Hierarchical molecular tagging to resolve long continuous sequences by massively parallel sequencingSverker Lundin, Joel Gruselius, Björn Nystedt, Preben Lexow, Max Käller, Joakim Lundeberg · 2013 · Scientific Reports
- Turning single cells into microarrays by super-resolution barcodingLong Cai · 2012 · Briefings in Functional Genomics
- Pitfalls in molecular diagnosticsLulu Sun, John D. Pfeifer · 2019 · Seminars in Diagnostic Pathology
- Defining data-driven primary transcript annotations with primaryTranscriptAnnotation in RWarren D. Anderson, Fabiana M. Duarte, Mete Civelek, Michael J. Guertin · 2020 · Bioinformatics
- The Application of Single-Cell RNA Sequencing in Mammalian Meiosis StudiesYiheng Peng, Huanyu Qiao · 2021 · Frontiers in Cell and Developmental Biology
- Comprehensive mutagenesis of the fimS promoter regulatory switch reveals novel regulation of type 1 pili in uropathogenic Escherichia coliHuibin Zhang, Teodorus Theo Susanto, Yue Wan, Swaine Lin Chen · 2016 · Proceedings of the National Academy of Sciences
- Next-generation sequencing to dynamically detect mechanisms of resistance to ALK inhibitors in ALK-positive NSCLC patients: a case reportEstela Sánchez‐Herrero, M. Blanco Clemente, Virginia Calvo, Mariano Provencio, Atocha Romero · 2020 · Translational Lung Cancer Research
- Small RNA and Transcriptome Sequencing Reveals miRNA Regulation of Floral Thermogenesis in Nelumbo nuciferaYu Zou, Guanglong Chen, Jing Jin, Ying Wang, Meiling Xu, Jing Yun Peng, Yi Ding · 2020 · International Journal of Molecular Sciences
- Whole Exome Library Construction for Next Generation SequencingWinnie S. Liang, Kristi Stephenson, Jonathan R. Adkins, Austin W. Christofferson, Adrienne Helland, Lori Cuyugan, Jonathan J. Keats · 2018 · Methods in molecular biology
- Unraveling the chicken T cell repertoire with enhanced genome annotationSimon P. Früh, Martin A. Früh, Benedikt B. Kaufer, Thomas Göbel · 2024 · Frontiers in Immunology
- Single-Cell Transcriptomic Characterization of Vertebrate Brain Composition, Development, and FunctionBosiljka Tasic, Boaz P. Levi, Vilas Menon · 2017 · Springer eBooks
- The Opportunities and Challenges of Molecular Tagging Next-Generation Sequencing in Liquid BiopsyGiuseppa De Luca, Mariella Dono · 2021 · Molecular Diagnosis & Therapy
- Single-Cell RNA Sequencing and Its Applications in the Study of Psychiatric DisordersAndré Saraiva Leão Marcelo Antunes, Daniel Martins‐de‐Souza · 2022 · Biological Psychiatry Global Open Science
- Exploring molecular biology in sequence space: The road to next-generation single-molecule biophysicsIvo Severins, Chirlmin Joo, John van Noort · 2022 · Molecular Cell
- The impact of single-cell genomics on the field of mycobacterial infectionInês Geraldes, Mónica Fernandes, Alexandra G. Fraga, Nuno Sampaio Osório · 2022 · Frontiers in Microbiology
- Old questions, new tools: does next-generation sequencing hold the key to unraveling intestinal B-cell responses?Oliver Pabst, Helena Hazanov, Ramit Mehr · 2014 · Mucosal Immunology
- Whole Genome Library Construction for Next Generation SequencingJonathan J. Keats, Lori Cuyugan, Jonathan R. Adkins, Winnie S. Liang · 2018 · Methods in molecular biology
- Performance of the OncomineTM Lung cfDNA Assay for Liquid Biopsy by NGS of NSCLC Patients in Routine Laboratory PracticeGiuseppa De Luca, Sonia Lastraioli, Romana Conte, Marco Mora, Carlo Genova, Giovanni Rossi, Marco Tagliamento, Simona Coco, Maria Giovanna Dal Bello, Simona Zupo et al. · 2020 · Applied Sciences
- Single-Cell Transcriptional Profiling of the Intestinal EpitheliumClaudia Capdevila, Ruben I. Calderon, Erin C. Bush, Kismet Sheldon-Collins, Peter A. Sims, Kelley S. Yan · 2020 · Methods in molecular biology
- Emerging Applications of Single-Cell DiagnosticsMasafumi Shirai, T. Taniguchi, Hideki Kambara · 2012 · Topics in current chemistry
- Single-Cell RNA Sequencing of Bone Marrow Mesenchymal Stem Cells from the Elderly PeopleDezhou Zhu, Jie Gao, Chengxuan Tang, Zheng Quan Xu, Tiansheng Sun · 2021 · International Journal of Stem Cells
- Establishment of preanalytical conditions for microRNA profile analysis of clinical plasma samplesKuno Suzuki, Tatsuya Yamaguchi, Masakazu Kohda, Masami Tanaka, Hiroyuki Takemura, Mitsuru Wakita, Yoko Tabe, Shunsuke Kato, Motomi Nasu, Takashi Hashimoto et al. · 2022 · PLoS ONE
- Re-Analyses of Samples From Amyotrophic Lateral Sclerosis Patients and Controls Identify Many Novel Small RNAs With Diagnostic And Prognostic PotentialPhillipe Loher, Eric R. Londin, Hristelina S. Ilieva, Piera Pasinelli, Isidore Rigoutsos · 2025 · Molecular Neurobiology
- A detailed analysis of second and third-generation sequencing approaches for accurate length determination of short tandem repeats and homopolymersSophie I. Jeanjean, Yimin Shen, Lise M. Hardy, Antoine Daunay, Marc Délepine, Zuzana Gerber, Antonio Alberdi, Emmanuel Tubacher, Jean‐François Deleuze, Alexandre How‐Kit · 2025 · Nucleic Acids Research
- High-throughput characterization of mutations in genes that drive clonal evolution using multiplex adaptome capture sequencingDaniel E. Deatherage, Jeffrey E. Barrick · 2021 · Cell Systems
- Circulating tumor DNA in early-stage colon cancer: ready for prime time or needing refinement?João Paulo Solar Vasconcelos, Mélina Boutin, Jonathan M. Loree · 2022 · Therapeutic Advances in Medical Oncology
- Effects of chemical in vitro activation versus fragmentation on human ovarian tissue and follicle growth in cultureJie Hao, Tianyi Li, Manuel T. Heinzelmann, Elisabeth L. Moussaud-Lamodière, Filipa Lebre, Kaarel Krjutškov, Anastasios E. Damdimopoulos, Catarina Arnelo, Karin Pettersson, Ernesto Alfaro‐Moreno et al. · 2024 · Human Reproduction Open
- Flexible parsing, interpretation, and editing of technical sequences with splitcodeDelaney K. Sullivan, Lior S. Pachter · 2024 · Bioinformatics
- Multiplexed primer extension sequencing: A targeted RNA-seq method that enables high-precision quantitation of mRNA splicing isoforms and rare pre-mRNA splicing intermediatesMichael A. Gildea, Zachary W. Dwyer, Jeffrey A. Pleiss · 2019 · Methods
- A Conserved TCRβ Signature Dominates a Highly Polyclonal T-Cell Expansion During the Acute Phase of a Murine Malaria InfectionNatasha L. Smith, Wiebke Nahrendorf, Catherine Sutherland, Jason P. Mooney, Joanne Thompson, Philip J. Spence, Graeme J. M. Cowan · 2020 · Frontiers in Immunology
- Stably expressed genes in single-cell RNA sequencingJulie M. Deeke, Johann A. Gagnon-Bartsch · 2020 · Journal of Bioinformatics and Computational Biology
- Development and application of a next-generation sequencing protocol and bioinformatics pipeline for the comprehensive analysis of the canine immunoglobulin repertoireJonah N. Cullen, Jolyon Martin, Albert J. Vilella, Amy E. Treeful, David Richard Sargan, Allan Bradley, Steven G. Friedenberg · 2022 · PLoS ONE
- IsoSeek for unbiased and UMI-informed sequencing of miRNAs from low input samples at single-nucleotide resolutionMonique A.J. van Eijndhoven, Chantal Scheepbouwer, Ernesto Aparicio‐Puerta, Michael Hackenberg, Dirk Michiel Pegtel · 2023 · STAR Protocols
- Methodologies for bacterial ribonuclease characterization using RNA-seqLaura Broglia, Anaïs Le Rhun, Emmanuelle Charpentier · 2023 · FEMS Microbiology Reviews
- Fast, sensitive, and specific multiplexed single-molecule detection of circulating tumor DNASoochul Shin, Sun Ho Han, Juyoung Kim, Yumi Shin, Ji‐Joon Song, Sungchul Hohng · 2023 · Biosensors and Bioelectronics
- Lessons from single-cell transcriptome analysis of oxygen-sensing cellsTing Zhou, Hiroaki Matsunami · 2017 · Cell and Tissue Research
- Coordinate expression of pan-neuronal and functional signature genes in sympathetic neuronsUwe Ernsberger, Marco Krämer, Konstantina Tsarovina, Thomas Deller, Hermann Rohrer · 2017 · Cell and Tissue Research
- Characterization of the Nucleosome Landscape by Micrococcal Nuclease-Sequencing (MNase-seq)Wieteke A. M. Hoeijmakers, Richárd Bártfai · 2017 · Methods in molecular biology
- Barcode sequencing identifies resistant mechanisms to epidermal growth factor receptor inhibitors in circulating tumor DNA of lung cancer patientsSatoru Kitazono, Kazuko Sakai, Noriko Yanagitani, Ryo Ariyasu, Takahiro Yoshizawa, Yosuke Dotsu, Junji Koyama, Masafumi Saiki, Tomoaki Sonoda, Shingo Nishikawa et al. · 2019 · Cancer Science
- Characterization of the ferret TRB locus guided by V, D, J, and C gene expression analysisBram Gerritsen, Aridaman Pandit, Fatiha Zaaraoui‐Boutahar, Mirjam C. G. N. van den Hout, Wilfred F. J. van IJcken, Rob J. de Boer, Arno C. Andeweg · 2019 · Immunogenetics
- Single-Cell RNA Sequencing of Ovarian Cancer: Promises and ChallengesShobhana Talukdar, Zenas Chang, Boris J. N. Winterhoff, Timothy K. Starr · 2021 · Advances in experimental medicine and biology
- Enhancing biological signals and detection rates in single-cell RNA-seq experiments with cDNA library equalizationRhonda L. Bacher, Li‐Fang Chu, Cara Argus, Jennifer M. Bolin, Parker Knight, James Alexander Thomson, Ron M. Stewart, Christina M. Kendziorski · 2021 · Nucleic Acids Research
- RNA sequencing-based screen for reactivation of silenced alleles of autosomal genesSaumya Gupta, Denis L. J. Lafontaine, Sébastien Vigneau, Asia Mendelevich, S.V. Vinogradova, Kyomi J. Igarashi, Andrew N. Bortvin, Clara Pereira, Anwesha Nag, Alexander A. Gimelbrant · 2021 · G3 Genes Genomes Genetics
- Detecting Fear-Memory-Related Genes from Neuronal scRNA-seq Data by Diverse Distributions and Bhattacharyya DistanceShaoqiang Zhang, Linjuan Xie, Yaxuan Cui, Benjamin R. Carone, Yong Chen · 2022 · Biomolecules
- Rapid evolutionary adaptation to growth on an ‘unfamiliar’ carbon sourceZvi Tamari, Avihu H. Yona, Yitzhak Pilpel, Naama Barkai · 2016 · BMC Genomics