Counting absolute numbers of molecules using unique molecular identifiers

Kivioja, Teemu, Vähärautio, Anna, Karlsson, Kasper, Bonke, Martin, Enge, Martin, Linnarsson, Sten, Taipale, Jussi·2012·Nature Methods

Cited by (1,001)

Items 601–700 of 1,001

  1. Prevention of data duplication for high throughput sequencing repositories
    Idan Gabdank, Esther T. Chan, Jean M. Davidson, Jason A. Hilton, Carrie Davis, Ulugbek K. Baymuradov, Aditi K. Narayanan, Maria Kathrina Oñate, Keenan Graham, Stuart R. Miyasato et al. · 2018 · Database
  2. Estimating RNA numbers in single cells by RNA fluorescent tagging and flow cytometry
    Mohamed N. M. Bahrudeen, Vatsala Chauhan, Cristina S.D. Palma, Samuel M. D. Oliveira, Vinodh K. Kandavalli, Andre Sanches Ribeiro · 2019 · Journal of Microbiological Methods
  3. Detecting protein and post-translational modifications in single cells with iDentification and qUantification sEparaTion (DUET)
    Yandong Zhang, Chang Ho Sohn, Seo Yeon Lee, Hee-Jeong Ahn, Jinyoung Seo, Junyue Cao, Long Cai · 2020 · Communications Biology
  4. UMI-Reducer: Collapsing duplicate sequencing reads via Unique Molecular Identifiers
    Serghei Mangul, Sarah Van Driesche, Lana S. Martin, Kelsey C. Martin, Eleazar Eskin · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
  5. RNA-sequencing in ophthalmology research: considerations for experimental design and analysis
    Nicholas Owen, Mariya Moosajee · 2019 · Therapeutic Advances in Ophthalmology
  6. DNA methylation is a key mechanism for maintaining monoallelic expression on autosomes
    Saumya Gupta, Denis L. J. Lafontaine, Sébastien Vigneau, Svetlana Vinogradova, Asia Mendelevich, Kyomi J. Igarashi, Andrew N. Bortvin, Clara Pereira, Kendell Clement, Luca Pinello et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  7. High-accuracy meets high-throughput for microbiome profiling with near full-length 16S rRNA amplicon sequencing on the Nanopore platform
    Xuan Lin, Katherine Waring, John R. Tyson, Ryan M. Ziels · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  8. Single-Cell Multi-Omics Sequencing Technologies and Their Applications in Livestock and Poultry Research
    Jinping Cao, Xiaohan Zhou, Jie Liu, Dewu Liu, Guangbin Liu · 2025 · Journal of Agricultural and Food Chemistry
  9. Tools and tactics for studying alternative splicing
    Rui Sousa‐Luís, Maria Carmo‐Fonseca · 2026 · Nature Reviews Genetics
  10. Translation-complex profiling of fission yeast cells reveals dynamic rearrangements of scanning ribosomal subunits upon nutritional stress
    Caia D. S. Duncan, Juan Mata · 2022 · Nucleic Acids Research
  11. Transcriptomic and Metabolomic Analysis of Liver Cirrhosis
    Xiao Kuang, Jinyu Li, Yiheng Xu, Lihong Yang, Xiaoxiao Liu, Jinhui Yang, Wenlin Tai · 2023 · Combinatorial Chemistry & High Throughput Screening
  12. Identifying distant relatives using benchtop-scale sequencing
    August E. Woerner, Nicole M.M. Novroski, Sammed N. Mandape, Jonathan L. King, Benjamin Crysup, Michael D. Coble · 2023 · Forensic Science International Genetics
  13. Facilitated sequence counting and assembly by template mutagenesis
    Dan Levy, Michael H. Wigler · 2014 · Proceedings of the National Academy of Sciences
  14. PeakXus: comprehensive transcription factor binding site discovery from ChIP-Nexus and ChIP-Exo experiments
    Tuomo Hartonen, Biswajyoti Sahu, Kashyap Dave, Teemu Kivioja, Jussi Taipale · 2016 · Bioinformatics
  15. Single-cell sequencing leads a new era of profiling transcriptomic landscape
    Huidan Zhang, Naiwen Cui, Yamei Cai, Fengyang Lei, David A. Weitz · 2018 · Journal of Bio-X Research
  16. BUTTERFLY: addressing the pooled amplification paradox with unique molecular identifiers in single-cell RNA-seq
    Johan Gustafsson, Jonathan L. Robinson, Jens Nielsen, Lior S. Pachter · 2021 · Genome biology
  17. cyPhyRNA-seq: a genome-scale RNA-seq method to detect active self-cleaving ribozymes by capturing RNAs with 2ʹ,3ʹ cyclic phosphates and 5ʹ hydroxyl ends
    V Janett Olzog, Christiane Gärtner, Peter Florian Stadler, Jörg Fallmann, Christina E. Weinberg · 2021 · RNA Biology
  18. EDClust: an EM–MM hybrid method for cell clustering in multiple-subject single-cell RNA sequencing
    Xin Wei, Ziyi Li, Hongkai Ji, Hao Wu · 2022 · Bioinformatics
  19. Accurate measurement of microsatellite length by disrupting its tandem repeat structure
    Zihua Wang, Andrea B. Moffitt, Peter Andrews, Michael H. Wigler, Dan Levy · 2022 · Nucleic Acids Research
  20. Partial bisulfite conversion for unique template sequencing
    Vijay Kumar, Julie Rosenbaum, Zihua Wang, Talitha Forcier, Michael Ronemus, Michael H. Wigler, Dan Levy · 2017 · Nucleic Acids Research
  21. Invasion of Trichoferus campestris (Coleoptera: Cerambycidae) into the United States characterized by high levels of genetic diversity and recurrent introductions
    Yunke Wu, Sindhu M. Krishnankutty, Kendra A. Vieira, Baode Wang, Hannah Nadel, Scott W. Myers, Ann M. Ray · 2020 · Biological Invasions
  22. Reading the heart at single-cell resolution
    Bingying Zhou, Li Wang · 2020 · Journal of Molecular and Cellular Cardiology
  23. Constraint Preserving Score for Automatic Hyperparameter Tuning of Dimensionality Reduction Methods for Visualization
    Viet Minh Vu, Adrien Bibal, Benoît Frénay‬ · 2021 · IEEE Transactions on Artificial Intelligence
  24. Recent advances in single-cell RNA sequencing of bacteria: Techniques, challenges, and applications
    Mika Nishimura, Kazuki Takahashi, Masahito Hosokawa · 2025 · Journal of Bioscience and Bioengineering
  25. Identification of circulating human papillomavirus types through high-throughput sequencing of Canadian municipal and institutional wastewater samples
    Shayna J. Giesbrecht, Samantha J. Krosta, Rebecca Fox, Kurt P. Kolsun, Zoe Quill, Suzanne Gibbons, Aida Sivro, Paul A. Sandstrom, Chand S. Mangat, Michael G. Becker · 2025 · Applied and Environmental Microbiology
  26. Molecular Diagnostics of Non-Hodgkin Lymphoma
    James P. Solomon, Maria E. Arcila · 2020 · The Cancer Journal
  27. Benefits of applying molecular barcoding systems are not uniform across different genomic applications
    Jonathan Bieler, Slawomir Kubik, Morgane Macheret, Christian Pozzorini, Adrian Willig, Zhenyu Xu · 2023 · Journal of Translational Medicine
  28. Neural circuit-wide analysis of changes to gene expression during deafening-induced birdsong destabilization
    Bradley M. Colquitt, Kelly Li, Foad Green, Robert Veline, Michael S. Brainard · 2023 · eLife
  29. Clonal tracking in cancer and metastasis
    Syed Mohammed Musheer Aalam, Long Viet Nguyen, Megan L. Ritting, Nagarajan Kannan · 2023 · Cancer and Metastasis Reviews
  30. Dynamics of liver cancer cellular taxa revealed through single-cell RNA sequencing: Advances and challenges
    Wenxin Li, Huisi He, Hongyang Wang, Wen Wen · 2024 · Cancer Letters
  31. Clinical Bioinformatician Body of Knowledge—Bioinformatics and Software Core
    Sabah Kadri, Kelly E. Craven, Amber M Fussell, Elaine P.S. Gee, Danielle Jordan, Eric W. Klee, Niklas Krumm, Robyn Temple‐Smolkin, Ahmet Zehir, Weiwei Zhang et al. · 2025 · Journal of Molecular Diagnostics
  32. Digital Gene Expression Analysis with Sample Multiplexing and PCR Duplicate Detection: A Straightforward Protocol
    Andrey Rozenberg, Florian Leese, Linda C. Weiss, Ralph Tollrian · 2016 · BioTechniques
  33. HIITE: HIV-1 incidence and infection time estimator
    Sung Yong Park, Tanzy Love, Shivankur Kapoor, Ha Youn Lee · 2018 · Bioinformatics
  34. Molecular Heterogeneity in Large-Scale Biological Data: Techniques and Applications
    Chao Deng, Timothy Daley, Guilherme De Sena Brandine, Andrew D. Smith · 2019 · Annual Review of Biomedical Data Science
  35. Deep Mining of Human Antibody Repertoires: Concepts, Methodologies, and Applications
    Xiaolong Tian, Cheng Li, Yanling Wu, Tianlei Ying · 2020 · Small Methods
  36. Novel Functional Genes Involved in Transdifferentiation of Canine ADMSCs Into Insulin-Producing Cells, as Determined by Absolute Quantitative Transcriptome Sequencing Analysis
    Pengxiu Dai, Jiakai Li, Yijing Chen, Luwen Zhang, Xinke Zhang, Jinglu Wang, Guixiang Qi, Yihua Zhang · 2021 · Frontiers in Cell and Developmental Biology
  37. Transcriptome Sequencing (RNA-Seq)
    Jacquelyn Reuther, Angshumoy Roy, Federico A. Monzon · 2018 · Springer eBooks
  38. Increased H3K27 trimethylation contributes to cone survival in a mouse model of cone dystrophy
    Annie L. Miller, Paula I. Fuller-Carter, Klaudija Masarini, Marijana Samardzija, Kim W. Carter, Rabab Rashwan, Xin Ru Lim, Alicia A. Brunet, Abha Chopra, Ramesh Ram et al. · 2022 · Cellular and Molecular Life Sciences
  39. Single-cell RNA-seq of maize meiocytes and pollen grains
    Mary E. Washburn, Jaime Alaniz-Fabián, Taylor Scroggs, Bradlee D. Nelms · 2023 · Nature Protocols
  40. In situ sequencing
    Tal Nawy · 2013 · Nature Methods
  41. Asymmetrical barcode adapter-assisted recovery of duplicate reads and error correction strategy to detect rare mutations in circulating tumor DNA
    J. Ahn, Byungjin Hwang, Han Young Kim, H. Jang, Hwang-Phill Kim, Sae-Won Han, Tae-You Kim, Ji Hyun Lee, D. Bang · 2017 · Scientific Reports
  42. Identification and integrated analysis of mRNAs, lncRNAs, and microRNAs of developing seeds in high oleic acid sunflower (Helianthus annuus L.)
    Yan Liu, Fei Zhou, Xutang Huang, Wenjun Wang, Shuquan Zhang, Fujuan Feng · 2021 · Acta Physiologiae Plantarum
  43. Single-cell RNA sequencing in tuberculosis: Application and future perspectives
    Yuejuan Zhan, Qiran Zhang, Wenyang Wang, Wenyi Liang, Chengdi Wang · 2024 · Chinese Medical Journal
  44. CD3+ T-cell: CD14+ monocyte complexes are dynamic and increased with HIV and glucose intolerance
    Laventa M. Obare, Joshua D. Simmons, Jared M. Oakes, Xiuqi Zhang, Cindy Hager Nochowicz, Stephen Priest, Samuel S. Bailin, Christian M. Warren, Mona Mashayekhi, Heather K. Beasley et al. · 2025 · The Journal of Immunology
  45. PCBP1 regulates alternative splicing of AARS2 in congenital cardiomyopathy
    Yao Wei Lu, Zhuomin Liang, Kerry Dorr, Samantha Ruiz, Xiaoran Huang, Denise Fangnibo Hanvi, Sheri M. Juntilla, Gisela Beutner, Shuhan Lyu, Haipeng Guo et al. · 2026 · Nature Cardiovascular Research
  46. Affordable, accurate and unbiased RNA sequencing by manual library miniaturization: A case study in barley
    Christopher Arlt, Thorsten Wachtmeister, Karl Köhrer, Benjamin Stich · 2023 · Plant Biotechnology Journal
  47. Ultrasensitive sequencing of STR markers utilizing unique molecular identifiers and the SiMSen-Seq method
    Maja Sidstedt, Arvid H. Gynnå, Kevin M. Kiesler, Linda Jansson, Carolyn R. Steffen, Joakim Håkansson, Gustav Johansson, Tobias Österlund, Yalda Rahpeymai Bogestål, Andreas O. Tillmar et al. · 2024 · Forensic Science International Genetics
  48. Detection of mRNA Transcript Variants
    Kevin Vo, Sharmin Shila, Yashica Sharma, Grace J. Pei, Cinthia Y. Rosales, Vinesh Dahiya, Patrick E. Fields, M. A. Karim Rumi · 2025 · Genes
  49. Cloning and Sequencing Eukaryotic Small RNAs
    Olivia J Crocker, Natalie A. Trigg, Colin C. Conine · 2022 · Current Protocols
  50. Counting unique molecular identifiers in sequencing using a multi-type branching process with immigration
    Serik Sagitov, Anders Ståhlberg · 2022 · Journal of Theoretical Biology
  51. Pola Viz Reveals Microglia Polarization at Single Cell Level in Alzheimer’s Disease
    Chenyu Zhang, Pujan Joshi, Honglin Wang, Seung-Hyun Hong, Riqiang Yan, Dong‐Guk Shin · 2022 · IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
  52. Regulatory mechanism of MeGI on sexuality in Diospyros oleifera
    Yini Mai, Peng Sun, Yujing Suo, Huawei Li, Weijuan Han, Songfeng Diao, Liyuan Wang, Jiaying Yuan, Yiru Wang, Lingshuai Ye et al. · 2023 · Frontiers in Plant Science
  53. SigPrimedNet: A Signaling-Informed Neural Network for scRNA-seq Annotation of Known and Unknown Cell Types
    Pelin Gundogdu, Inmaculada Álamo-Álvarez, Isabel A. Nepomuceno-Chamorro, Joaquı́n Dopazo, Carlos Loucera · 2023 · Biology
  54. Computational single cell oncology: state of the art
    Ernesto Paas-Oliveros, Enrique Hernandez Lemus, Guillermo de Anda‐Jáuregui · 2023 · Frontiers in Genetics
  55. Lineage specification of early embryos and embryonic stem cells at the dawn of enabling technologies
    Guangdun Peng, Patrick Tam, Naihe Jing · 2017 · National Science Review
  56. EARRINGS: an efficient and accurate adapter trimmer entails no a priori adapter sequences
    Ting-Hsuan Wang, Cheng-Ching Huang, Jui‐Hung Hung · 2021 · Bioinformatics
  57. Single-Cell Transcriptome Profiling
    Guy Shapira, Noam Shomron · 2021 · Methods in molecular biology
  58. A Pipeline for the Error-Free Identification of Somatic Alu Insertions in High-Throughput Sequencing Data
    Gaiaz A. Nugmanov, Alexander Yu. Komkov, Maria V. Saliutina, Anastasia A. Minervina, Yuri B. Lebedev, Ilgar Z. Mamedov · 2019 · Molecular Biology
  59. Functional editing of endogenous genes through rapid selection of cell pools ( Rapid generation of endogenously tagged genes in Drosophila ovarian somatic sheath cells )
    Qingcai Meng, Daniel Stoyko, Celine Marlin Andrews, Παρθένα Κωνσταντινίδου, Pavol Genzor, O Timothy, Alexandra R. Elchert, Leif Benner, Sushil Sobti, Esther Y. Katz et al. · 2022 · Nucleic Acids Research
  60. 3' End Sequencing Library Preparation with A-seq2
    Georges Martin, Ralf Schmidt, Andreas J Gruber, Souvik Ghosh, Walter Keller, Mihaela Zavolan · 2017 · Journal of Visualized Experiments
  61. Plasma DNA for early cancer detection – opportunities and challenges
    W.K. Lam, Kwan Chee Allen Chan · 2018 · Expert Review of Molecular Diagnostics
  62. DNA barcoded peptide-MHC multimers to measure and monitor minor histocompatibility antigen-specific T cells after allogeneic stem cell transplantation
    Kyra J. Fuchs, Marcus Göransson, Michel G.D. Kester, Natasja W Ettienne, Marian van de Meent, Rob C. M. de Jong, Eva A. S. Koster, Constantijn J.M. Halkes, Ferenc A. Scheeren, Mirjam H.M. Heemskerk et al. · 2024 · Journal for ImmunoTherapy of Cancer
  63. Somatic mutation in autosomal dominant polycystic kidney disease revealed by deep sequencing human kidney cysts
    Amali C. Mallawaarachchi, Yvonne Hort, Laura Wedd, Kitty Lo, Sarah R. Senum, Mojgan Toumari, Wenhan Chen, Mike Utsiwegota, Jane Mawson, Scott Leslie et al. · 2024 · npj Genomic Medicine
  64. CAR-SPLASH identifies nascent pre-mRNA structures implicated in kinetic coupling and alternative splicing
    Hossein Shenasa, Nova Fong, Benjamin Erickson, Ira Alexandra Iosub, Jernej Ule, David L. Bentley · 2025 · Proceedings of the National Academy of Sciences
  65. Non-invasive prenatal testing for the diagnosis of sickle cell disease in high-risk pregnancies: A systematic review and statistical summary of the current literature
    Christina Anastasia Resta, Ran Xiong, Sarah Sturrock, Lisa Story, Konstantinos Malligiannis Ntalianis, Paul Townsend Seed, Eugene Oteng‐Ntim · 2025 · European Journal of Obstetrics & Gynecology and Reproductive Biology
  66. From noise to models to numbers: Evaluating negative binomial models and parameter estimations in single-cell RNA-seq
    Yiling Wang, Zhanpeng Shu, Zhixing Cao, Ramon Grima · 2026 · PLoS Computational Biology
  67. Population structure and hybridization under contemporary and future climates in a heteroploid foundational shrub species (Artemisia tridentata)
    Lukas P. Grossfurthner, Elizabeth R. Milano, Paul A. Hohenlohe, Lisette P. Waits, Bryce A. Richardson · 2023 · Frontiers in Plant Science
  68. Unique molecular identifier-based amplicon sequencing of microhaplotypes for background noise mitigation
    Ye‐Lim Kwon, Kyoung‐Jin Shin · 2024 · Forensic Science International Genetics
  69. Single‑cell RNA sequencing data dimensionality reduction (Review)
    Vasileios L. Zogopoulos, Ioanna Tsotra, Demetrios A. Spandidos, Vassiliki A. Iconomidou, Ioannis Michalopoulos · 2025 · World Academy of Sciences Journal
  70. Dual UMIs and Dual Barcodes With Minimal PCR Amplification Removes Artifacts and Acquires Accurate Antibody Repertoire
    Qilong Wang, Huikun Zeng, Yan Zhu, Minhui Wang, Yanfang Zhang, Xiujia Yang, Haipei Tang, Hongliang Li, Yuan Chen, Cuiyu Ma et al. · 2021 · Frontiers in Immunology
  71. Applications of single‐cell multi‐omics sequencing in deep understanding of brain diseases
    Xu Zhang, Ping Lü, Xiaorong Shen · 2022 · Clinical and Translational Discovery
  72. Dynamic miRNA profile of host T cells during early hepatic stages of Schistosoma japonicum infection
    Bikash Ranjan Giri, Shun Li, Chuantao Fang, Lin Qiu, Shi Yan, Maria Y. Pakharukova, Guofeng Cheng · 2022 · Frontiers in Immunology
  73. Beyond Transcript Concentrations: Quantifying Polyploid Expression Responses per Biomass, per Genome, and per Cell with RNA-Seq
    Jeremy E. Coate · 2023 · Methods in molecular biology
  74. Improving the Accuracy of Bulk Fitness Assays by Correcting Barcode Processing Biases
    Ryan Seamus McGee, Grant Kinsler, Dmitri A. Petrov, Mikhail Tikhonov · 2024 · Molecular Biology and Evolution
  75. Single-Cell RNA Sequencing and Its Applications in Pituitary Research
    Shuangjian Yang, Congcong Deng, Changqin Pu, Xuexue Bai, Chenxin Tian, Mengqi Chang, Ming Feng · 2024 · Neuroendocrinology
  76. Differences in microRNA within plasma extracellular vesicles at various time points during early pregnancy in sheep revealed by high-throughput sequencing data
    Zhanmin Lv, Zhenliang Zhang, Yucheng Liu, Jingjing Wang, Weijun Liu, Pengcheng Wan, Jianhong Ni, Chunxia Lu, Changbin Liu · 2025 · Animal Reproduction Science
  77. A Mechanistic Beta-Binomial Probability Model for mRNA Sequencing Data
    Gregory R. Smith, Marc R. Birtwistle · 2016 · PLoS ONE
  78. Vertical flow array chips reliably identify cell types from single-cell mRNA sequencing experiments
    Masataka Shirai, Koji Arikawa, Kiyomi Taniguchi, Maiko Tanabe, Tomoyuki Sakai · 2016 · Scientific Reports
  79. Analysis of Technical and Biological Variability in Single-Cell RNA Sequencing
    Beomseok Kim, Eunmin Lee, Jong Kyoung Kim · 2019 · Methods in molecular biology
  80. Single-Cell Sequencing of T cell Receptors: A Perspective on the Technological Development and Translational Application
    Shivai Gupta, Richard Witas, Alexandria Voigt, Touyana Semenova, Cuong Quoc Nguyen · 2020 · Advances in experimental medicine and biology
  81. SeqURE – a new copy-capture based method for sequencing of unknown Retroposition events
    Alexander Yu. Komkov, Shamil Z. Urazbakhtin, Maria V. Saliutina, Ekaterina A. Komech, Yu. A. Shelygin, Gaiaz A. Nugmanov, В. П. Шубин, Anastasia Smirnova, Mikhail Y. Bobrov, А. С. Цуканов et al. · 2020 · Mobile DNA
  82. Development and Validation of a Targeted ‘Liquid’ NGS Panel for Treatment Customization in Patients with Metastatic Colorectal Cancer
    Myrto Kastrisiou, George Zarkavelis, Anastasia Kougioumtzi, Prodromos Sakaloglou, Charilaos Kostoulas, Ioannis A. Georgiou, Anna K. Batistatou, George E. Pentheroudakis, Angeliki Magklara · 2021 · Diagnostics
  83. Deduplication Improves Cost-Efficiency and Yields of De Novo Assembly and Binning of Shotgun Metagenomes in Microbiome Research
    Zhiguo Zhang, Lu Zhang, Guoqing Zhang, Ze Zhao, Hui Wang, Feng Ju · 2023 · Microbiology Spectrum
  84. BET-seq: Binding energy topographies revealed by microfluidics and high-throughput sequencing
    Arjun K. Aditham, Tyler C. Shimko, Polly Morrell Fordyce · 2018 · Methods in cell biology
  85. Fuzzysplit: demultiplexing and trimming sequenced DNA with a declarative language
    Daniel Liu · 2019 · PeerJ
  86. Large scale control and programming of gene expression using CRISPR
    Matthew Deyell, Sandeep Ameta, Philippe Nghe · 2019 · Seminars in Cell and Developmental Biology
  87. Transplant Virus Detection Using Multiplex Targeted Sequencing
    Susanna K. Tan, Peidong Shen, Martina I. Lefterova, Malaya Kumar Sahoo, Eula Fung, Justin Iver Odegaard, Ronald Wayne Davis, Benjamin A. Pinsky, Curt Scharfe · 2018 · The Journal of Applied Laboratory Medicine
  88. A Small RNA Isolation and Sequencing Protocol and Its Application to Assay CRISPR RNA Biogenesis in Bacteria
    Sukrit Silas, Nimit Jain, Michael R. Stadler, Becky Xu Hua Fu, Antonio Sánchez-Amat, Andrew Z. Fire, Joshua A. Arribere · 2018 · BIO-PROTOCOL
  89. Unified Analysis of Multiple ChIP-Seq Datasets
    Gang Ma, Isaac A. Babarinde, Qiang Zhuang, Andrew P. Hutchins · 2020 · Methods in molecular biology
  90. Machine learning for discovery: deciphering RNA splicing logic
    Susan E. Liao, Mukund Sudarshan, Oded Regev · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  91. Gene regulatory patterning codes in early cell fate specification of the C. elegans embryo
    Alison G. Cole, Tamar Hashimshony, Zhuo Du, Itai Yanai · 2023 · eLife
  92. An improved method for the highly specific detection of transcription start sites
    Masahide Seki, Yuta Kuze, Xiang Zhang, Ken‐ichi Kurotani, Michitaka Notaguchi, Haruki Nishio, Hiroshi Kudoh, Takuya Suzaki, Satoko Yoshida, Sumio Sugano et al. · 2023 · Nucleic Acids Research
  93. Serum Exosomal MicroRNAs as Potential Biomarkers for Centrally Mediated Abdominal Pain Syndrome
    Tang Yuming, Ying Zhu, Song Jiani, Yao Weiyan, Zou Duowu · 2024 · Journal of Pain
  94. UMI-nea: a fast, robust tool for reference-free UMI deduplication and accurate quantification
    Jixin Deng, Jingxiao Zhang, Song Tian, John DiCarlo, Hong Xu, Samuel J. Rulli, Jonathan M. Shaffer, Vikas Gupta, Toeresin Karakoyun · 2025 · Bioinformatics
  95. The Absence of Retroelement Activity Is Characteristic for Childhood Acute Leukemias and Adult Acute Lymphoblastic Leukemia
    Shamil Z. Urazbakhtin, Anastasia Smirnova, Anastasiya Volakhava, Elena Zerkalenkova, Maria Salyutina, Michael Doubek, Hana Jelínková, Nelly Khudainazarova, Egor Volchkov, Laima Belyaeva et al. · 2022 · International Journal of Molecular Sciences
  96. A pilot study of precision treatment for patients with lung cancer pain by Longteng Tongluo recipe using serum genomics.
    W U Ruixin, Qingliang Fang, Sisi Guan, Wei Xianglong, Shan Mengjun, Mao Zhujun, Gong Yabin, X U Ling, Di Zhou, Dong Changsheng · 2024 · PubMed Central
  97. Single‐Cell Transcriptomic Analysis
    Zhihong Zheng, Enguo Chen, Weiguo Lü, Gary Charles Mouradian, Matthew Robert Hodges, Mingyu Liang, Pengyuan Liu, Yan Lü · 2020 · Comprehensive physiology
  98. Quantitative and sensitive sequencing of somatic mutations induced by a maize transposon
    Justin Scherer, Michael Hinczewski, Bradlee D. Nelms · 2025 · Proceedings of the National Academy of Sciences
  99. DNA Barcoding through Quaternary LDPC Codes
    Elizabeth Tapia, Flavio Ezequiel Spetale, Flávia Krsticevic, Laura Angelone, Pilar Bulacio · 2015 · PLoS ONE
  100. Use of Treatment-Focused Tumor Sequencing to Screen for Germline Cancer Predisposition
    Tammy Lau, Christina M. May, Zahra J. Sefid Dashti, Lucas Swanson, Elizabeth R. Starks, Jeremy Parker, Richard A. Moore, Tracy Tucker, Ian Bosdet, Sean S Young et al. · 2021 · Journal of Molecular Diagnostics