The DOI matches its Crossref record; 26 of the 26 references it cites were found in a registry or an index.
Icy: an open bioimage informatics platform for extended reproducible research
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Citations
Cites
Fiji: an open-source platform for biological-image analysis
Schindelin, J., Arganda-Carreras, I., Frise, E., Kaynig, V., Longair, M., Pietzsch, T., Preibisch, S., Rueden, C., Saalfeld, S., Schmid, B., et al. (2012) · Nature Methods · doi:10.1038/nmeth.2019 · Cited by 66,890
Abràmoff, M. D., Magalhães, P. J., & Ram, S. J. (2004) · Utrecht University Repository (Utrecht University) · Cited by 11,821
CellProfiler: image analysis software for identifying and quantifying cell phenotypes
Carpenter, A. E., Jones, T. R., Lamprecht, M. R., Clarke, C., Kang, I. H., Friman, O., Guertin, D. A., Chang, J. H., Lindquist, R. A., Moffat, J., et al. (2006) · Genome Biology · doi:10.1186/gb-2006-7-10-r100 · Cited by 5,157
Design and validation of a tool for neurite tracing and analysis in fluorescence microscopy images
Meijering, E., Jacob, M., Sarria, J. ‐. F., Steiner, P., Hirling, H., & Unser, M. (2004) · Cytometry Part A · doi:10.1002/cyto.a.20022 · Cited by 1,608
OMERO: flexible, model-driven data management for experimental biology
Allan, C., Burel, J.-M., Moore, J., Blackburn, C., Linkert, M., Loynton, S., MacDonald, D., Moore, W. J., Neves, C., Patterson, A., et al. (2012) · Nature Methods · doi:10.1038/nmeth.1896 · Cited by 653
Prions hijack tunnelling nanotubes for intercellular spread
Gousset, K., Schiff, E., Langevin, C., Marijanovic, Z., Caputo, A., Browman, D. T., Chenouard, N., de Chaumont, F., Martino, A., Enninga, J., et al. (2009) · Nature Cell Biology · doi:10.1038/ncb1841 · Cited by 615
Self-citationExtraction of spots in biological images using multiscale products
Olivo-Marin, J.-C. (2002) · Pattern Recognition · doi:10.1016/s0031-3203(01)00127-3 · Cited by 539
Self-citationThe case for open computer programs
Ince, D. C., Hatton, L., & Graham-Cumming, J. (2012) · Nature · doi:10.1038/nature10836 · Cited by 535
SAGA interacting factors confine sub-diffusion of transcribed genes to the nuclear envelope
Cabal, G. G., Genovesio, A., Rodriguez-Navarro, S., Zimmer, C., Gadal, O., Lesne, A., Buc, H., Feuerbach-Fournier, F., Olivo-Marin, J.-C., Hurt, E. C., et al. (2006) · Nature · doi:10.1038/nature04752 · Cited by 465
Self-citationGene expression divergence recapitulates the developmental hourglass model
Kalinka, A. T., Varga, K. M., Gerrard, D. T., Preibisch, S., Corcoran, D. L., Jarrells, J., Ohler, U., Bergman, C. M., & Tomancak, P. (2010) · Nature · doi:10.1038/nature09634 · Cited by 426
Cited by
NIH Image to ImageJ: 25 years of image analysis
Schneider, C. A., Rasband, W. S., & Eliceiri, K. W. (2012) · Nature Methods · doi:10.1038/nmeth.2089 · Cited by 64,638
QuPath: Open source software for digital pathology image analysis
Bankhead, P., Loughrey, M. B., Fernández, J. A., Dombrowski, Y., McArt, D. G., Dunne, P. D., McQuaid, S., Gray, R. T., Murray, L. J., Coleman, H. G., et al. (2017) · Scientific Reports · doi:10.1038/s41598-017-17204-5 · Cited by 8,908
TrackMate: An open and extensible platform for single-particle tracking
Tinevez, J.-Y., Perry, N., Schindelin, J., Hoopes, G. M., Reynolds, G. D., Laplantine, E., Bednarek, S. Y., Shorte, S. L., & Eliceiri, K. W. (2017) · Methods · doi:10.1016/j.ymeth.2016.09.016 · Cited by 3,380
Greenwald, N. F., Miller, G., Moen, E., Kong, A., Kagel, A., Dougherty, T., Fullaway, C. C., McIntosh, B. J., Leow, K. X., Schwartz, M. S., et al. (2022) · Nature Biotechnology · doi:10.1038/s41587-021-01094-0 · Cited by 953
Objective comparison of particle tracking methods
Chenouard, N., Smal, I., de Chaumont, F., Maška, M., Sbalzarini, I. F., Gong, Y., Cardinale, J., Carthel, C., Coraluppi, S., Winter, M., et al. (2014) · Nature Methods · doi:10.1038/nmeth.2808 · Cited by 894
Self-citation
Metadata
- Authors
- de Chaumont, F., Dallongeville, S., Chenouard, N., Hervé, N., Pop, S., Provoost, T., Meas-Yedid, V., Pankajakshan, P., Lecomte, T., Le Montagner, Y., Lagache, T., Dufour, A., & Olivo-Marin, J.-C.
- Venue
- Nature Methods
- Published
- 2012-06-28
- Volume
- 9
- Issue
- 7
- Pages
- 690-696
- ISSN
- 1548-7091 (ISSN-L)
- 1548-7105
- OpenAlex
- W2037947871
- Cited by
- 1,538
- References
- 26
- FWCI
- 23.06
- Type
- journal article
- Language
- en
- Open access
- closed
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Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
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How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: Icy: an open bioimage informatics platform for extended reproducible research. https://app.cochat.ai/papers/10.1038/nmeth.2075
- The paper
- de Chaumont, F., Dallongeville, S., Chenouard, N., Hervé, N., Pop, S., Provoost, T., Meas-Yedid, V., Pankajakshan, P., Lecomte, T., Le Montagner, Y., Lagache, T., Dufour, A., & Olivo-Marin, J.-C. (2012). Icy: an open bioimage informatics platform for extended reproducible research. Nature Methods. https://doi.org/10.1038/nmeth.2075
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
