Smart-seq2 for sensitive full-length transcriptome profiling in single cells

Picelli, Simone, Björklund, Åsa K, Faridani, Omid R, Sagasser, Sven, Winberg, Gösta, Sandberg, Rickard·2013·Nature Methods
DOI 10.1038/nmeth.2639

Cited by (1,005)

Items 401–500 of 1,005

  1. Circulating T cell-monocyte complexes are markers of immune perturbations
    Julie G. Burel, Mikhail Pomaznoy, Cecilia S. Lindestam Arlehamn, Daniela Weiskopf, Ricardo da Silva Antunes, Yunmin Jung, Mariana Babor, Véronique M J Schulten, Grégory Seumois, Jason Greenbaum et al. · 2019 · eLife
  2. Single-Cell RNA Sequencing with Spatial Transcriptomics of Cancer Tissues
    Rashid Ahmed, Tariq Zaman, Farhan Chowdhury, Fatima Mraiche, Muhammad Tariq, Irfan S. Ahmad, Anwarul Hasan · 2022 · International Journal of Molecular Sciences
  3. Odontoblast TRPC5 channels signal cold pain in teeth
    Laura Bernal, Pamela Sotelo-Hitschfeld, Christine König, Viktor Sinica, Amanda K. Wyatt, Zoltán Winter, Alexander Hein, Filip Touška, Susanne Reinhardt, Aaron Tragl et al. · 2021 · Science Advances
  4. DNA replication fork speed underlies cell fate changes and promotes reprogramming
    Tsunetoshi Nakatani, Jiangwei Lin, Fei Ji, Andreas W. Ettinger, Julien Pontabry, Mikiko Tokoro, Luis Altamirano‐Pacheco, Jonathan Fiorentino, Elmir Mahammadov, Yu Hatano et al. · 2022 · Nature Genetics
  5. Advanced maternal age alters expression of maternal effect genes that are essential for human oocyte quality
    Jingjing Zhang, Xiaoyan Liu, Li Chen, Shouxin Zhang, Xia Zhang, Cuifang Hao, Yi‐Liang Miao · 2020 · Aging
  6. Tumor-promoting macrophages prevail in malignant ascites of advanced gastric cancer
    Hye Hyeon Eum, Minsuk Kwon, Daeun Ryu, Areum Jo, Woosung Chung, Nayoung Kim, Yourae Hong, Dae‐Soon Son, Seung Tae Kim, Jeeyun Lee et al. · 2020 · Experimental & Molecular Medicine
  7. Single-cell quantification of a broad RNA spectrum reveals unique noncoding patterns associated with cell types and states
    Alina Isakova, Norma F Neff, Stephen R. Quake · 2021 · Proceedings of the National Academy of Sciences
  8. Prime-seq, efficient and powerful bulk RNA sequencing
    Aleksandar Janjic, Lucas Esteban Wange, Johannes Bagnoli, Johanna Geuder, Phong Nguyen, Daniel Richter, Beate Vieth, Binje Vick, Irmela Jeremias, Christoph Ziegenhain et al. · 2022 · Genome biology
  9. Studying hematopoiesis using single-cell technologies
    Fang Ye, Wentao Huang, Guoji Guo · 2017 · Journal of Hematology & Oncology
  10. The ontogeny, activation and function of the epicardium during heart development and regeneration
    Filipa Costa Simões, Paul Richard Riley · 2018 · Development
  11. Pro-inflammatory Aorta-Associated Macrophages Are Involved in Embryonic Development of Hematopoietic Stem Cells
    Samanta Antonella Mariani, Zhuan Li, Siobhan Rice, Carsten Krieg, Stamatina Fragkogianni, Mark D. Robinson, Chris Sebastiaan Vink, Jeffrey W. Pollard, Elaine Anne Dzierzak · 2019 · Immunity
  12. Advances in bulk and single-cell multi-omics approaches for systems biology and precision medicine
    Yunjin Li, Lu Ma, Duojiao Wu, Geng Chen · 2021 · Briefings in Bioinformatics
  13. Transplanted human cones incorporate into the retina and function in a murine cone degeneration model
    Sylvia Jane Gasparini, Karen Tessmer, Miriam Reh, Stephanie Wieneke, Madalena Carido, Manuela Völkner, Oliver Borsch, Anka Swiersy, Marta Žužić, Olivier Goureau et al. · 2022 · Journal of Clinical Investigation
  14. Single cell transcriptomics in neuroscience: cell classification and beyond
    Tasic, Bosiljka · 2018 · Current Opinion in Neurobiology
  15. Single-cell joint detection of chromatin occupancy and transcriptome enables higher-dimensional epigenomic reconstructions
    Xiong, Haiqing, Luo, Yingjie, Wang, Qianhao, Yu, Xianhong, He, Aibin · 2021 · Nature Methods
  16. The MicroRNA-132 and MicroRNA-212 Cluster Regulates Hematopoietic Stem Cell Maintenance and Survival with Age by Buffering FOXO3 Expression
    Arnav Mehta, Jimmy L. Zhao, Nikita Sinha, Georgi K. Marinov, Mati Mann, Monika S. Kowalczyk, Rachel P. Galimidi, Xiaomi Du, Erdem Erikçi, Aviv Regev et al. · 2015 · Immunity
  17. Planarian Epidermal Stem Cells Respond to Positional Cues to Promote Cell-Type Diversity
    Omri Wurtzel, Isaac M. Oderberg, Peter W. Reddien · 2017 · Developmental Cell
  18. Zonation of Ribosomal DNA Transcription Defines a Stem Cell Hierarchy in Colorectal Cancer
    Clara Morral, Jelena Stanisavljević, Xavier Hernando‐Momblona, Elisabetta Mereu, Adrián Álvarez-Varela, Carme Cortina, Diana Stork, Felipe Slebe, Gemma Turón, Gavin Whissell et al. · 2020 · Cell stem cell
  19. Planarian stem cells specify fate yet retain potency during the cell cycle
    Amelie A. Raz, Omri Wurtzel, Peter W. Reddien · 2021 · Cell stem cell
  20. Proliferation Drives Aging-Related Functional Decline in a Subpopulation of the Hematopoietic Stem Cell Compartment
    Kristina Kirschner, Tamir Chandra, Vladimir Yu Kiselev, David Flores Santa Cruz, Iain C. Macaulay, Hyun Jun Park, Juan Li, David G. Kent, Rupa Kumar, Dean C. Pask et al. · 2017 · Cell Reports
  21. The first wave of T lymphopoiesis in zebrafish arises from aorta endothelium independent of hematopoietic stem cells
    Ye Tian, Jin Xu, Shachuan Feng, Sicong He, Shizheng Zhao, Lu Zhu, Wan Jin, Yimei Dai, Lingfei Luo, Jianan Y. Qu et al. · 2017 · The Journal of Experimental Medicine
  22. Mitofusin 2 plays a role in oocyte and follicle development, and is required to maintain ovarian follicular reserve during reproductive aging
    Man Zhang, Muhammed Burak Bener, Zongliang Jiang, Tianren Wang, Ecem Esencan, Richard Scott, Tamás L. Horváth, Emre U Seli · 2019 · Aging
  23. Non-templated addition and template switching by Moloney murine leukemia virus (MMLV)-based reverse transcriptases co-occur and compete with each other
    Madalee G. Wulf, Sean Maguire, Paul Humbert, Nan Dai, Yanxia Bei, Nicole M. Nichols, Ivan Reis Correa Junior, Shengxi Guan · 2019 · Journal of Biological Chemistry
  24. Evaluation of single-cell classifiers for single-cell RNA sequencing data sets
    Xinlei Shelly Zhao, Shuang Wu, Nan Fang, Xiao Song Sun, Jue Fan · 2019 · Briefings in Bioinformatics
  25. Double emulsion flow cytometry with high-throughput single droplet isolation and nucleic acid recovery
    Kara K. Brower, Catherine Carswell-Crumpton, Sandy L. Klemm, Bianca N. Cruz, Gaeun Kim, Suzanne G. K. Calhoun, Lisa A. Nichols, Polly Morrell Fordyce · 2020 · Lab on a Chip
  26. IL-1β–driven osteoclastogenic Tregs accelerate bone erosion in arthritis
    Anaïs Levescot, Margaret H. Chang, Julia T. Schnell, Nathan Nelson-Maney, Jing Yan, Marta Martínez‐Bonet, Ricardo Grieshaber‐Bouyer, Pui Y. Lee, Kevin Wei, Rachel B. Blaustein et al. · 2021 · Journal of Clinical Investigation
  27. The leak channel NALCN controls tonic firing and glycolytic sensitivity of substantia nigra pars reticulata neurons
    Andrew Lutas, Carolina Lahmann, Magali Soumillon, Gary Yellen · 2016 · eLife
  28. Single Cell Analysis of Endothelial Cells Identified Organ-Specific Molecular Signatures and Heart-Specific Cell Populations and Molecular Features
    Wei Hong Feng, Lyuqin Chen, Patricia Kim Phuong Nguyen, Sean M. Wu, Guang Li · 2019 · Frontiers in Cardiovascular Medicine
  29. Single-nuclei transcriptomes from human adrenal gland reveal distinct cellular identities of low and high-risk neuroblastoma tumors
    Oscar C. Bedoya-Reina, Wenyu Li, Maria Arceo, Monika Plescher, Petra Bullova, Han‐Pin Pui, Markéta Kaucká, Peter V. Kharchenko, Tommy Martinsson, Johan Holmberg et al. · 2021 · Nature Communications
  30. Single-Cell Sequencing Technologies: Current and Future
    Jialong Liang, Wanshi Cai, Zhong Sheng Sun · 2014 · Journal of genetics and genomics/Journal of Genetics and Genomics
  31. Advances in single-cell RNA sequencing and its applications in cancer research
    Sibo Zhu, Tao Qing, Yuanting Zheng, Jin Li, Leming M. Shi · 2017 · Oncotarget
  32. Hierarchical and stage-specific regulation of murine cardiomyocyte maturation by serum response factor
    Guo, Yuxuan, Jardin, Blake D., Zhou, Pingzhu, Sethi, Isha, Akerberg, Brynn N., Toepfer, Christopher N, Ai, Yulan, Li, Yifei, Ma, Qing, Guatimosim, Silvia et al. · 2018 · Nature Communications
  33. A comparative analysis of library prep approaches for sequencing low input translatome samples
    Yang Song, Beatrice C. Milon, Sandra H. Ott, Xuechu Zhao, Lisa Sadzewicz, Amol Carl Shetty, Erich T. Boger, Luke J. Tallon, Robert J. Morell, Anup Mahurkar et al. · 2018 · BMC Genomics
  34. Refining the transcriptome of the human malaria parasite Plasmodium falciparum using amplification-free RNA-seq
    Lia Chappell, Philipp Ross, Lindsey Orchard, Timothy J. Russell, Thomas D. Otto, Matthew Berriman, Julian C. Rayner, Manuel Llinás · 2020 · BMC Genomics
  35. Systematic comparison of high-throughput single-cell RNA-seq methods for immune cell profiling
    Tracy Yamawaki, Daniel Lu, Daniel Christian Ellwanger, Dev M. Bhatt, Paolo S. Manzanillo, Vanessa Arias, Hong Zhou, Oh Kyu Yoon, Oliver R. Homann, Songli Wang et al. · 2021 · BMC Genomics
  36. Single cell RNA-seq reveals profound transcriptional similarity between Barrett’s oesophagus and oesophageal submucosal glands
    Richard Peter Owen, Michael Joseph White, David Tyler Severson, Barbara Braden, Adam A Bailey, Robert David Goldin, Lai Mun Wang, Carlos Ruiz‐Puig, Nicholas David Maynard, Angie Green et al. · 2018 · Nature Communications
  37. Identification of biomarkers for amyotrophic lateral sclerosis by comprehensive analysis of exosomal mRNAs in human cerebrospinal fluid
    Kentaro Otake, Hidenori Kamiguchi, Yoshihiko Hirozane · 2019 · BMC Medical Genomics
  38. NFI transcription factors provide chromatin access to maintain stem cell identity while preventing unintended lineage fate choices
    Rene C. Adam, Hanseul Yang, Yejing Ge, Nicole R. Infarinato, Shiri Gur‐Cohen, Yuxuan Miao, Ping Wang, Yilin Zhao, Catherine Pei-Ju Lu, Jeong Eun Kim et al. · 2020 · Nature Cell Biology
  39. How to design a single-cell RNA-sequencing experiment: pitfalls, challenges and perspectives
    Alessandra Dal Molin, Barbara Di Camillo · 2018 · Briefings in Bioinformatics
  40. Distinct subtypes of proprioceptive dorsal root ganglion neurons regulate adaptive proprioception in mice
    Wu, Haohao, Petitpré, Charles, Fontanet, Paula, Sharma, Anil, Bellardita, Carmelo, Quadros, Rolen M., Jannig, Paulo R., Wang, Yiqiao, Heimel, J. Alexander, Cheung, Kylie K. Y. et al. · 2021 · Nature Communications
  41. High-throughput single-cell transcriptomics on organoids
    Agnieska Brazovskaja, Barbara Treutlein, J. Gray Camp · 2018 · Current Opinion in Biotechnology
  42. CellTagging: combinatorial indexing to simultaneously map lineage and identity at single-cell resolution
    Wenjun Kong, Brent A. Biddy, Kenji Kamimoto, Junedh Amrute, Emily G. Butka, Samantha A. Morris · 2020 · Nature Protocols
  43. Transcriptional and imprinting complexity in Arabidopsis seeds at single-nucleus resolution
    Colette Lafontaine Picard, Rebecca A. Povilus, Ben P. Williams, Mary A. Gehring · 2021 · Nature Plants
  44. Molecular and Cellular Insights into the Development of Uterine Fibroids
    Alba Machado-Lopez, Carlos Simón, Aymara Mas · 2021 · International Journal of Molecular Sciences
  45. Joint dimension reduction and clustering analysis of single-cell RNA-seq and spatial transcriptomics data
    Wei Liu, Xu Liao, Yi Yang, Huazhen Lin, Joe Poh-Sheng Yeong, Xiang Zhou, Xingjie Shi, Jin Liu · 2022 · Nucleic Acids Research
  46. A systematic performance evaluation of clustering methods for single-cell RNA-seq data
    Angelo Duò, Mark D. Robinson, Charlotte Soneson · 2018 · F1000Research
  47. Single-cell sequencing: a promising approach for uncovering the mechanisms of tumor metastasis
    Yingying Han, Dan Wang, Lushan Peng, Tao Huang, Xiaoyun He, Junpu Wang, Chunlin Ou · 2022 · Journal of Hematology & Oncology
  48. Deep autoencoder for interpretable tissue-adaptive deconvolution and cell-type-specific gene analysis
    Yanshuo Chen, Yixuan Wang, Yuelong Chen, Yuqi Cheng, Yumeng Wei, Yunxiang Li, Jiuming Wang, Yingying Wei, Ting‐Fung Chan, Yu Li · 2022 · Nature Communications
  49. In silico lineage tracing through single cell transcriptomics identifies a neural stem cell population in planarians
    Alyssa M. Molinaro, Bret J. Pearson · 2016 · Genome biology
  50. Two phenotypically and functionally distinct microglial populations in adult zebrafish
    Shuting Wu, Linh T. M. Nguyen, Hongru Pan, Shaoli Hassan, Yimei Dai, Jin Xu, Zilong Wen · 2020 · Science Advances
  51. Unravelling glioblastoma heterogeneity by means of single-cell RNA sequencing
    Ana Hernández Martínez, Rodrigo Madurga, Noemí Garcia‐Romero, Ángel Ayuso‐Sacido · 2021 · Cancer Letters
  52. Human Wharton's Jelly Mesenchymal Stem Cells Show Unique Gene Expression Compared with Bone Marrow Mesenchymal Stem Cells Using Single-Cell RNA-Sequencing
    Angela N. Barrett, Chui‐Yee Fong, Arjunan Subramanian, Wenting Liu, Yirui Feng, Mahesh A. Choolani, Arijit Biswas, Jagath Chandana Rajapakse, Ariff Bongso · 2018 · Stem Cells and Development
  53. Single cell RNA sequencing of AML initiating cells reveals RNA-based evolution during disease progression
    Lindsay C. Stetson, Dheepa Balasubramanian, Susan Pereira Ribeiro, Tammy Stefan, Kalpana Gupta, Xuan Xu, Slim Fourati, Anne Jessica Roe, Zachary Jackson, Robert Schauner et al. · 2021 · Leukemia
  54. Single-cell sequencing technology applied to epigenetics for the study of tumor heterogeneity
    Yuhua Hu, Feng Shen, Xi Yang, Tingting Han, Zhuowen Long, Jiale Wen, Junxing Huang, Jiangfeng Shen, Qing Guo · 2023 · Clinical Epigenetics
  55. Stimulation of asymbiotic sporulation in arbuscular mycorrhizal fungi by fatty acids
    Hiromu Kameoka, Ippo Tsutsui, Katsuharu Saito, Yusuke Kikuchi, Yoshihiro Handa, Tatsuhiro Ezawa, Hideo Hayashi, Masayoshi Kawaguchi, Kohki Akiyama · 2019 · Nature Microbiology
  56. Activation of a neural stem cell transcriptional program in parenchymal astrocytes
    Jens Peter Magnusson, Margherita Zamboni, Giuseppe Santopolo, Jeff Eron Mold, Mauricio Barrientos‐Somarribas, Carlos N. Talavera-López, Björn Andersson, Jonas Frisén · 2020 · eLife
  57. The piRNA pathway is essential for generating functional oocytes in golden hamsters
    Hongdao Zhang, Fengjuan Zhang, Qinghua Chen, Mingzhe Li, Xiaolong Lv, Yali Xiao, Zhaozhen Zhang, Li Hou, Yana Lai, Ying Zhang et al. · 2021 · Nature Cell Biology
  58. Parallel sequencing of extrachromosomal circular DNAs and transcriptomes in single cancer cells
    Rocío Chamorro González, Thomas Conrad, Maja C Stöber, Robin Xu, Mădălina Giurgiu, Elias Rodríguez-Fos, Katharina Kasack, Lotte Brückner, Eric van Leen, Konstantin Helmsauer et al. · 2023 · Nature Genetics
  59. B-cell receptor reconstruction from single-cell RNA-seq with VDJPuzzle
    Simone Rizzetto, David Koppstein, Jerome Samir, Mandeep Singh, Joanne H. Reed, Curtis Cai, Andrew R. Lloyd, Auda A. Eltahla, Christopher Carl Goodnow, Fabio Luciani · 2018 · Bioinformatics
  60. Self-assembling manifolds in single-cell RNA sequencing data
    Alexander J. Tarashansky, Yuan Xue, Pengyang Li, Stephen R. Quake, Bo Wang · 2019 · eLife
  61. Transcriptomic sex differences in sensory neuronal populations of mice
    Jennifer M. Mecklenburg, Yi Zou, Andi Wangzhou, Dawn K. Garcia, Zhao Lai, Alexei V. Tumanov, Gregory O. Dussor, Theodore John Price, Armen N. Akopian · 2020 · Scientific Reports
  62. A clustering-independent method for finding differentially expressed genes in single-cell transcriptome data
    Alexis Vandenbon, Diego Díez · 2020 · Nature Communications
  63. Locus-specific expression of transposable elements in single cells with CELLO-seq
    Rebecca V. Berrens, Andrian Yang, Christopher Laumer, Aaron T. L. Lun, Florian Bieberich, Cheuk‐Ting Law, Guocheng Lan, Maria Imaz, Joseph S. Bowness, Neil Brockdorff et al. · 2021 · Nature Biotechnology
  64. Antigen presentation safeguards the integrity of the hematopoietic stem cell pool
    Pablo Hernández-Malmierca, Dominik Vonficht, Alexandra Schnell, H. Uckelmann, Alina Bollhagen, M. Mahmoud, Sophie-Luise Landua, Elise van der Salm, Christine L. Trautmann, S. Raffel et al. · 2022 · Cell Stem Cell
  65. RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes
    Ka Ming Nip, Readman Chiu, Chen Yang, Justin Chu, Hamid Mohamadi, René L. Warren, İnanç Birol · 2020 · Genome Research
  66. Using single‐cell multiple omics approaches to resolve tumor heterogeneity
    Ortega, Michael A., Poirion, Olivier, Zhu, Xun, Huang, Sijia, Wolfgruber, Thomas K., Sebra, Robert, Garmire, Lana X. · 2017 · Clinical and Translational Medicine
  67. The workflow of single-cell expression profiling using quantitative real-time PCR
    Anders Ståhlberg, Mikael Kubista · 2014 · Expert Review of Molecular Diagnostics
  68. Transcriptomic and epigenetic mechanisms underlying myeloid diversity in the lung
    Enikö Sajti, Verena M. Link, Zhengyu Ouyang, Nathanael J. Spann, Emma M. Westin, Casey E. Romanoski, Gregory J. Fonseca, Lawrence S. Prince, Christopher K. Glass · 2020 · Nature Immunology
  69. Single-Cell RNA Sequencing in Lung Cancer: Revealing Phenotype Shaping of Stromal Cells in the Microenvironment
    Jianhong Zhang, Chengyang Song, Ye F. Tian, Xueying Yang · 2022 · Frontiers in Immunology
  70. Sox2 Acts in a Dose-Dependent Fashion to Regulate Proliferation of Cortical Progenitors
    Daniel W. Hagey, Jonas Muhr · 2014 · Cell Reports
  71. Select sequencing of clonally expanded CD8 + T cells reveals limits to clonal expansion
    Huang Huang, Michael J. Sikora, Saiful Islam, Roshni Roy Chowdhury, Yueh‐hsiu Chien, Thomas J. Scriba, Mark M. Davis, Lars Michael Steinmetz · 2019 · Proceedings of the National Academy of Sciences
  72. Cell competition acts as a purifying selection to eliminate cells with mitochondrial defects during early mouse development
    Ana Lima, Gabriele Lubatti, Jörg Patrick Burgstaller, Di Hu, Alistair P. Green, Aida Di Gregorio, Tamzin Zawadzki, Bárbara Pernaute, Elmir Mahammadov, Salvador Pérez-Montero et al. · 2021 · Nature Metabolism
  73. Microfluidics for Neuronal Cell and Circuit Engineering
    Rouhollah Habibey, Jesús Eduardo Rojo Arias, Johannes Striebel, Volker Busskamp · 2022 · Chemical Reviews
  74. Immune-interacting lymphatic endothelial subtype at capillary terminals drives lymphatic malformation
    Milena Petkova, Marle Kraft, Simon Stritt, Inés Martínez‐Corral, Henrik Ortsäter, Ying Sun, Michael Vanlandewijck, Bojana Jakic, Eulàlia Baselga, Sandra D. Castillo et al. · 2023 · The Journal of Experimental Medicine
  75. Systems Immunology: Learning the Rules of the Immune System
    Alexandra–Chloé Villani, Siranush Sarkizova, Nir Hacohen · 2018 · Annual Review of Immunology
  76. Population and Single-Cell Analysis of Human Cardiogenesis Reveals Unique LGR5 Ventricular Progenitors in Embryonic Outflow Tract
    Makoto Sahara, Federica Santoro, Jesper Sohlmér, Chikai Zhou, Nevin Witman, Chuen Yan Leung, Mimmi Mononen, Kristine Bylund, Peter J. Gruber, Kenneth R. Chien · 2019 · Developmental Cell
  77. Phylogenomics and Morphological Reconstruction of Arcellinida Testate Amoebae Highlight Diversity of Microbial Eukaryotes in the Neoproterozoic
    Daniel J. G. Lahr, Anush Kosakyan, Enrique Lara, Edward A. D. Mitchell, Luana Morais, Alfredo L. Porfírio‐Sousa, Giulia M. Ribeiro, Alexander K. Tice, Tomáš Pánek, Seungho Kang et al. · 2019 · Current Biology
  78. Bayesian inference of gene expression states from single-cell RNA-seq data
    Jérémie Breda, Mihaela Zavolan, Erik van Nimwegen · 2021 · Nature Biotechnology
  79. Heritable transcriptional defects from aberrations of nuclear architecture
    Stamatis Papathanasiou, Nikos A. Mynhier, Shiwei Liu, Gregory J. Brunette, Ema Stokasimov, Etai Jacob, Lanting Li, Caroline Comenho, Bas van Steensel, Jason D. Buenrostro et al. · 2023 · Nature
  80. scCross: a deep generative model for unifying single-cell multi-omics with seamless integration, cross-modal generation, and in silico exploration
    Xiuhui Yang, Koren Kathleen Mann, Hao Wu, Jun Ding · 2024 · Genome biology
  81. Matrix-producing neutrophils populate and shield the skin
    Tommaso Vicanolo, Alaz Özcan, Jackson Liang Yao Li, Carla Huerta-López, Iván Ballesteros, Andrea Rubio-Ponce, Andra C. Dumitru, José Ángel Nicolás-Ávila, Miguel Molina-Moreno, Pablo Reyes‐Gutierrez et al. · 2025 · Nature
  82. Immune checkpoint TIM-3 regulates microglia and Alzheimer’s disease
    Kimura, Kimitoshi, Subramanian, Ayshwarya, Yin, Zhuoran, Khalilnezhad, Ahad, Wu, Yufan, He, Danyang, Dixon, Karen O., Chitta, Udbhav Kasyap, Ding, Xiaokai, Adhikari, Niraj et al. · 2025 · Nature
  83. Sampling time-dependent artifacts in single-cell genomics studies
    Ramon Massoni-Badosa, Giovanni Iacono, Cátia Moutinho, Marta Kulis, Núria Palau, Doménica Marchese, Javier Rodríguez‐Ubreva, Esteban Ballestar, Gustavo Rodríguez-Esteban, Sara Marsal et al. · 2020 · Genome biology
  84. Multi-Omics Approaches in Immunological Research
    Xiaojing Chu, Bowen Zhang, Valerie A. C. M. Koeken, Manoj Kumar Gupta, Yang Li · 2021 · Frontiers in Immunology
  85. Droplet flow cytometry for single-cell analysis
    Ming Li, Hangrui Liu, Siyuan Zhuang, Keisuke Goda · 2021 · RSC Advances
  86. Single-cell analysis of mosquito hemocytes identifies signatures of immune cell subtypes and cell differentiation
    Hyeogsun Kwon, Mubasher Mohammed, Oscar Franzén, Johan Ankarklev, Ryan C. Smith · 2021 · eLife
  87. IL-33 Signaling Alters Regulatory T Cell Diversity in Support of Tumor Development
    Amy Li, Rebecca H. Herbst, David A. Canner, Jason M. Schenkel, Olivia C. Ghirardelli Smith, Jonathan Y. Kim, Michelle Hillman, Arjun J. Bhutkar, Michael S. Cuoco, C. Garrett Rappazzo et al. · 2019 · Cell Reports
  88. Retinoic acid signaling is critical during the totipotency window in early mammalian development
    Ane Iturbide, Mayra L. Ruiz Tejada Segura, Camille Noll, Kenji Schorpp, Ina Rothenaigner, Elias R. Ruiz-Morales, Gabriele Lubatti, Ahmed Agami, Kamyar Hadian, Antonio Scialdone et al. · 2021 · Nature Structural & Molecular Biology
  89. Identification of astrocyte regulators by nucleic acid cytometry
    Iain C. Clark, Michael A. Wheeler, Hong‐Gyun Lee, Zhaorong Li, Liliana María Sanmarco, Shravan Thaploo, Carolina Manganeli Polonio, Seung Won Shin, Giulia Scalisi, Amy R. Henry et al. · 2023 · Nature
  90. Computational correction of index switching in multiplexed sequencing libraries
    Anton J. M. Larsson, Geoff Stanley, Rahul Sinha, Irving L. Weissman, Rickard Sandberg · 2018 · Nature Methods
  91. A novel environment-evoked transcriptional signature predicts reactivity in single dentate granule neurons
    Baptiste N. Jaeger, Sara B. Linker, Sarah Parylak, Jerika J. Barron, Iryna S. Gallina, Christian D Saavedra, Conor Fitzpatrick, Christina K. Lim, Simon T. Schafer, Benjamin Lacar et al. · 2018 · Nature Communications
  92. Tissue-specific transcriptome profiling of the Arabidopsis inflorescence stem reveals local cellular signatures
    Dongbo Shi, Virginie Jouannet, Javier Agustí, Verena Kaul, V. G. Levitsky, Pablo Sánchez, Victoria Mironova, Thomas Greb · 2020 · The Plant Cell
  93. Heterogeneity in endothelial cells and widespread venous arterialization during early vascular development in mammals
    Siyuan Hou, Zongcheng Li, Ji Dong, Yun Gao, Zhilin Chang, Xiaochen Ding, Shuaili Li, Yunqiao Li, Yang Zeng, Xin Qian et al. · 2022 · Cell Research
  94. Comprehensive generation, visualization, and reporting of quality control metrics for single-cell RNA sequencing data
    Hong, Rui, Koga, Yusuke, Bandyadka, Shruthi, Leshchyk, Anastasia, Wang, Yichen, Akavoor, Vidya, Cao, Xinyun, Sarfraz, Irzam, Wang, Zhe, Alabdullatif, Salam et al. · 2022 · Nature Communications
  95. Systemic alterations in neutrophils and their precursors in early-stage chronic obstructive pulmonary disease
    Theodore S. Kapellos, Kevin E. Bassler, Wataru Fujii, Christina Nalkurthi, Anna Christina Schaar, Lorenzo Bonaguro, Tal Pecht, Izabela Galvão, Shobhit Agrawal, Adem Saglam et al. · 2023 · Cell Reports
  96. We can't all be supermodels: the value of comparative transcriptomics to the study of non‐model insects
    Sara J. Oppenheim, Richard H. Baker, Sabrina Simon, Rob DeSalle · 2014 · Insect Molecular Biology
  97. Longitudinal transcriptomics define the stages of myeloid activation in the living human brain after intracerebral hemorrhage
    Michael H. Askenase, Brittany A. Goods, Hannah E. Beatty, Arthur F. Steinschneider, Sofia E. Velazquez, Artem Osherov, Margaret J. Landreneau, Shaina L. Carroll, Tho B. Tran, Victor Avram et al. · 2021 · Science Immunology
  98. Enhancing clinical potential of liquid biopsy through a multi-omic approach: A systematic review
    Gianna Di Sario, Valeria Rossella, Elvira Smeralda Famulari, Aurora Maurizio, Dejan Lazarević, Francesca Giannese, Claudia Felici · 2023 · Frontiers in Genetics
  99. Simultaneous single-cell three-dimensional genome and gene expression profiling uncovers dynamic enhancer connectivity underlying olfactory receptor choice
    Honggui Wu, Jiankun Zhang, Fanchong Jian, Jinxin Chen, Yinghui Zheng, Longzhi Tan, Xiaoliang Sunney Xie · 2024 · Nature Methods
  100. Primed and ready: understanding lineage commitment through single cell analysis
    Rachael A. Nimmo, Gillian E. May, Tariq Enver · 2015 · Trends in Cell Biology