Smart-seq2 for sensitive full-length transcriptome profiling in single cells

Picelli, Simone, Björklund, Åsa K, Faridani, Omid R, Sagasser, Sven, Winberg, Gösta, Sandberg, Rickard·2013·Nature Methods
DOI 10.1038/nmeth.2639

Cited by (1,005)

Items 701–800 of 1,005

  1. Single-Cell Transcriptomic Analysis Reveals Mitochondrial Dynamics in Oocytes of Patients With Polycystic Ovary Syndrome
    Lingbin Qi, Boxuan Liu, Xian Chen, Qiwei Liu, Wanqiong Li, Bo Lv, Xiaoyu Xu, Lu Wang, Qiao Zeng, Jinfeng Xue et al. · 2020 · Frontiers in Genetics
  2. A Single Cell Transcriptomic Atlas Characterizes Aging Tissues in the Mouse
    Angela Oliveira Pisco, Aaron McGeever, Nicholas Schaum, Jim Karkanias, Norma F Neff, Spyros Darmanis, Tony Wyss‐Coray, Stephen R. Quake · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
  3. The microbiota restrains neurodegenerative microglia in a model of amyotrophic lateral sclerosis
    Cox, Laura M., Calcagno, Narghes, Gauthier, Christian, Madore, Charlotte, Butovsky, Oleg, Weiner, Howard L. · 2022 · Microbiome
  4. Thymic macrophages consist of two populations with distinct localization and origin
    Tyng-An Zhou, Hsuan-Po Hsu, Yueh-Hua Tu, Hui-Kuei Cheng, Chih‐Yu Lin, Nien‐Jung Chen, Jin‐Wu Tsai, Ellen A. Robey, Hsuan‐Cheng Huang, Chia‐Lin Hsu et al. · 2022 · eLife
  5. Spatial transcriptomics using multiplexed deterministic barcoding in tissue
    Johannes Wirth, Nina Huber, Kelvin Yin, Sophie Brood, Simon Chang, Celia Pilar Martinez‐Jimenez, Matthias Meier · 2023 · Nature Communications
  6. Acoel regeneration mechanisms indicate an ancient role for muscle in regenerative patterning
    Amelie A. Raz, Mansi Srivastava, Ranja Salvamoser, Peter W. Reddien · 2017 · Nature Communications
  7. Single-cell transcriptomic analysis of oligodendrocyte lineage cells
    David van Bruggen, Eneritz Agirre, Gonçalo Castelo‐Branco · 2017 · Current Opinion in Neurobiology
  8. Single-cell transcriptome analysis of Physcomitrella leaf cells during reprogramming using microcapillary manipulation
    Minoru Kubo, Tomoaki Nishiyama, Yosuke Tamada, Ryosuke Sano, Masaki Ishikawa, Takashi Murata, Akihiro Imai, Daniel Lang, Taku Demura, Ralf Reski et al. · 2019 · Nucleic Acids Research
  9. Growth Hormone Promotes in vitro Maturation of Human Oocytes
    Yue Li, Hui Liu, Qingqing Yu, Hongbin Liu, Tao Huang, Shigang Zhao, Jinlong Ma, Han Zhao · 2019 · Frontiers in Endocrinology
  10. Progress and applications of single-cell sequencing techniques
    Aimaiti Yasen, Abudusalamu Aini, Hui Wang, Wending Li, Chuanshan Zhang, Bo Ran, Tuerhongjiang Tuxun, Yusufukadier Maimaitinijiati, Yingmei Shao, Tuerganaili Aji et al. · 2020 · Infection Genetics and Evolution
  11. Extrafollicular IgD−CD27−CXCR5−CD11c− DN3 B cells infiltrate inflamed tissues in autoimmune fibrosis and in severe COVID-19
    Hugues Allard‐Chamard, Naoki Kaneko, Alice Bertocchi, Na Sun, Julie Boucau, Hsiao-Hsuan Kuo, Jocelyn R. Farmer, Cory A. Perugino, Vinay S. Mahajan, Samuel J. H. Murphy et al. · 2023 · Cell Reports
  12. Single-cell RNA-sequencing resolves self-antigen expression during mTEC development
    Ricardo J. Miragaia, Xiuwei Zhang, Tomás Gomes, Valentine Svensson, Tomislav Ilicic, Johan Henriksson, Gozde Kar, Tapio Lönnberg · 2018 · Scientific Reports
  13. Synaptotagmin 13 is neuroprotective across motor neuron diseases
    Monica Nizzardo, Michela Maria Taiana, Federica Rizzo, Julio Aguila Benitez, Jik Nijssen, Ilary Allodi, Valentina Melzi, Nereo Bresolin, Giacomo P. Comi, Eva Hedlund et al. · 2020 · Acta Neuropathologica
  14. Deciphering Cell Fate Decision by Integrated Single-Cell Sequencing Analysis
    Sagar, Dominic Grün · 2020 · Annual Review of Biomedical Data Science
  15. Induction of a colitogenic phenotype in Th1-like cells depends on interleukin-23 receptor signaling
    Pawlak, Mathias, DeTomaso, David, Schnell, Alexandra, Meyer zu Horste, Gerd, Lee, Youjin, Nyman, Jackson, Dionne, Danielle, Regan, Brianna M.L., Singh, Vasundhara, Delorey, Toni et al. · 2022 · Immunity
  16. Opportunities and tradeoffs in single-cell transcriptomic technologies
    Matilde Immacolata Conte, Azahara Fuentes‐Trillo, Cecilia Domínguez Conde · 2023 · Trends in Genetics
  17. Unveiling heterogeneity in MSCs: exploring marker-based strategies for defining MSC subpopulations
    Si Chen, Bowei Liang, Jianyong Xu · 2024 · Journal of Translational Medicine
  18. Kupffer cell programming by maternal obesity triggers fatty liver disease
    Hao Huang, Nora Reka Balzer, Lea Seep, Iva Šplíchalová, Nelli Blank-Stein, Maria Francesca Viola, Eliana Franco Taveras, Kerim Acil, Diana Fink, Franzisca Petrovic et al. · 2025 · Nature
  19. Massive and parallel expression profiling using microarrayed single-cell sequencing
    Sanja Vicković, Patrik L. Ståhl, Fredrik Salmén, Sarantis Giatrellis, Jakub Orzechowski Westholm, Annelie Mollbrink, José Fernández Navarro, Joaquín Custodio, Magda Bienko, Lesley‐Ann Sutton et al. · 2016 · Nature Communications
  20. Advances in Transcriptomics
    Robert C. Wirka, Milos Pjanic, Thomas Quertermous · 2018 · Circulation Research
  21. Probe-Seq enables transcriptional profiling of specific cell types from heterogeneous tissue by RNA-based isolation
    Ryoji Amamoto, M Garcia, Emma R. West, Jiho Choi, Sylvain W. Lapan, Elizabeth A. Lane, Norbert Perrimon, Constance L. Cepko · 2019 · eLife
  22. The effect of methanol fixation on single-cell RNA sequencing data
    Xinlei Wang, Lei Yu, Angela Ruohao Wu · 2021 · BMC Genomics
  23. The liver as an immunological barrier redefined by single‐cell analysis
    Zania Stamataki, Leo Swadling · 2020 · Immunology
  24. Single-Cell RNA Sequencing in Parkinson’s Disease
    Shi‐Xun Ma, Su Bin Lim · 2021 · Biomedicines
  25. Steering research on mRNA splicing in cancer towards clinical translation
    Olga Anczuków, Frédéric H.‐T. Allain, Brittany Lynn Angarola, Douglas L. Black, Angela Norie Brooks, Chonghui Cheng, Ana Conesa, Edie I. Crosse, Eduardo Eyras, Ernesto Guccione et al. · 2024 · Nature reviews. Cancer
  26. Molecular characterization of circulating tumor cells—from bench to bedside
    Yanmeng Li, Shaohan Wu, Fan Bai · 2017 · Seminars in Cell and Developmental Biology
  27. A Reproducibility-Based Computational Framework Identifies an Inducible, Enhanced Antiviral State in Dendritic Cells from HIV-1 Elite Controllers
    Enrique Martín‐Gayo, Michael B. Cole, Kellie E. Kolb, Zhengyu Ouyang, Jacqueline Cronin, Samuel W. Kazer, José Ordovás-Montañés, Mathias D. Lichterfeld, Bruce D. Walker, Nir Yosef et al. · 2018 · Genome biology
  28. Transcript Profiling Using Long-Read Sequencing Technologies
    Anthony Bayega, Yu Chang Wang, Spyros Oikonomopoulos, Haig Hugo Vrej Djambazian, Somayyeh Fahiminiya, Jiannis Ragoussis · 2018 · Methods in molecular biology
  29. Simultaneous Profiling of Gene Expression and Chromatin Accessibility in Single Cells
    Miguel Reyes, Kianna Billman, Nir Hacohen, Paul C. Blainey · 2019 · Advanced Biosystems
  30. Spatial RNA Sequencing Identifies Robust Markers of Vulnerable and Resistant Human Midbrain Dopamine Neurons and Their Expression in Parkinson’s Disease
    Julio Aguila Benitez, Shangli Cheng, Nigel Kee, Ming Cao, Menghan Wang, Qiaolin Deng, Eva Hedlund · 2021 · Frontiers in Molecular Neuroscience
  31. Identification and characterization of in vitro expanded hematopoietic stem cells
    L C James, Daniel Bode, Iwo Kuciński, Alyssa H. Cull, Fiona M. Bain, H. Becker, Maria Jassinskaja, Melania Barile, Grace Boyd, Miriam Belmonte et al. · 2022 · EMBO Reports
  32. LCM-seq reveals unique transcriptional adaptation mechanisms of resistant neurons and identifies protective pathways in spinal muscular atrophy
    Susanne Nichterwitz, Jik Nijssen, Helena Storvall, Christoph Schweingruber, Laura Helen Comley, Ilary Allodi, Mirjam van der Lee, Qiaolin Deng, Rickard Sandberg, Eva Hedlund · 2020 · Genome Research
  33. Scrublet: computational identification of cell doublets in single-cell transcriptomic data
    Wolock, Samuel L., Lopez, Romain, Klein, Allon M. · 2018
  34. Glioblastoma: Relationship between Metabolism and Immunosuppressive Microenvironment
    Ainhoa Hernández, Marta Doménech, Ana María Muñoz-Mármol, Cristina Carrato, Carmen Balañá · 2021 · Cells
  35. Allele-specific H3K9me3 and DNA methylation co-marked CpG-rich regions serve as potential imprinting control regions in pre-implantation embryo
    Hui Yang, Dandan Bai, Yanhe Li, Zhaowei Yu, Chenfei Wang, Yifan Sheng, Wenqiang Liu, Shaorong Gao, Yong Zhang · 2022 · Nature Cell Biology
  36. Towards a definition of microglia heterogeneity
    Luke M. Healy, Sameera Zia, Jason R. Plemel · 2022 · Communications Biology
  37. A T follicular helper cell origin for T regulatory type 1 cells
    Patricia Solé, Jun Yamanouchi, Josep Garnica, Muhammad Myn Uddin, Robert C. Clarke, Joel Moro, Nahir Garabatos, Shari Thiessen, Mireia Ortega, Santiswarup Singha et al. · 2023 · Cellular and Molecular Immunology
  38. Cytotoxic CD4+ tissue-resident memory T cells are associated with asthma severity
    Sara Herrera de la Mata, Ciro Ramírez-Suástegui, Heena M Mistry, Francisco Emmanuel Castañeda-Castro, Aref Kyyaly, Hayley A. Simon, Shu Ying Liang, Laurie C.K. Lau, Clair Barber, Monalisa Mondal et al. · 2023 · Med
  39. Comprehensive Evaluation and Optimization of Amplicon Library Preparation Methods for High-Throughput Antibody Sequencing
    Ulrike Menzel, Victor Greiff, Tarik A. Khan, Ulrike Haessler, Ina Hellmann, Simon Friedensohn, Skylar C. Cook, Mark Pogson, Sai T. Reddy · 2014 · PLoS ONE
  40. Single-cell RNA sequencing reveals diverse intratumoral heterogeneities and gene signatures of two types of esophageal cancers
    Hongjin Wu, Juehua Yu, Ying Li, Qiang Hou, Rongjin Zhou, Ni Zhang, Jing Zhao, Mingfeng Jiang, Ziwei Li, Yuhui Hua et al. · 2018 · Cancer Letters
  41. Joint single-cell multiomic analysis in Wnt3a induced asymmetric stem cell division
    Zhongxing Sun, Yin Tang, Yanjun Zhang, Yuan Fang, Junqi Jia, Weiwu Zeng, Fang Dong · 2021 · Nature Communications
  42. Single‐cell transcriptomics in human skin research: available technologies, technical considerations and disease applications
    Georgios Theocharidis, Stavroula Tekkela, Aristidis Veves, John Alexander McGrath, Alexandros Onoufriadis · 2022 · Experimental Dermatology
  43. TAS-Seq is a robust and sensitive amplification method for bead-based scRNA-seq
    Shigeyuki Shichino, Satoshi Ueha, Shinichi Hashimoto, Tatsuro Ogawa, Hiroyasu Aoki, Bin Wu, Chang-Yu Chen, Masahiro Kitabatake, Noriko Ouji-Sageshima, Noriyoshi Sawabata et al. · 2022 · Communications Biology
  44. Cardiac splicing as a diagnostic and therapeutic target
    Gotthardt, Michael, Badillo-Lisakowski, Victor, Parikh, Victoria Nicole, Ashley, Euan, Furtado, Marta, Carmo-Fonseca, Maria, Schudy, Sarah, Meder, Benjamin, Grosch, Markus, Steinmetz, Lars et al. · 2023 · Nature Reviews Cardiology
  45. CellO: comprehensive and hierarchical cell type classification of human cells with the Cell Ontology
    Bernstein, Matthew N., Ma, Zhongjie, Gleicher, Michael, Dewey, Colin N. · 2021 · iScience
  46. Single‐cell transcriptome analysis of human oocyte ageing
    Lihua Yuan, Ping Yin, Hua Yan, Xiufang Zhong, Chunxia Ren, Kai Li, Boon Chin Heng, Wuwen Zhang, Guoqing Tong · 2021 · Journal of Cellular and Molecular Medicine
  47. From nasal to basal: single-cell sequencing of the bursa of Fabricius highlights the IBDV infection mechanism in chickens
    Abid Ullah Shah, Yuchen Li, Wei Ouyang, Zhisheng Wang, Jinjiao Zuo, Song Mei Shi, Qinghua Yu, Jian Lin, Qian Yang · 2021 · Cell & Bioscience
  48. Binding of MBD proteins to DNA blocks Tet1 function thereby modulating transcriptional noise
    Anne Kathrin Ludwig, Peng Zhang, Florian D. Hastert, Stephanie Meyer, Cathia Rausch, Henry David Herce, Udo Müller, Anne Lehmkuhl, Ines Hellmann, Carina Trummer et al. · 2016 · Nucleic Acids Research
  49. DOCK8 enforces immunological tolerance by promoting IL-2 signaling and immune synapse formation in Tregs
    Erin Janssen, Sudha Kumari, Mira Tohmé, Sumana Ullas, Víctor Barrera, Jeroen M. J. Tas, M. Castillo‐Rama, Roderick Terry Bronson, Shariq M. Usmani, Darrell J. Irvine et al. · 2017 · JCI Insight
  50. The Use of the Fluidigm C1 for RNA Expression Analyses of Single Cells
    Daniel M. DeLaughter · 2018 · Current Protocols in Molecular Biology
  51. Holo-Seq: single-cell sequencing of holo-transcriptome
    Zhengyun Xiao, Guo Cheng, Yang Jiao, Chen Pan, Ran Li, Dan-Mei Jia, Jing Zhu, Chao Wu, Min Zheng, Jun-Ling Jia · 2018 · Genome Biology
  52. Maturing Human CD127+ CCR7+ PDL1+ Dendritic Cells Express AIRE in the Absence of Tissue Restricted Antigens
    J. Fergusson, M. Morgan, M. Bruchard, L. Huitema, B. Heesters, V. van Unen, J. P. van Hamburg, N. N. van der Wel, Daisy I. Picavet, F. Koning et al. · 2019 · Frontiers in Immunology
  53. BRCA2 deficiency is a potential driver for human primary ovarian insufficiency
    Yilong Miao, Pan Wang, Bingteng Xie, Mo Yang, Sen Li, Zhaokang Cui, Yong Fan, Mo Li, Bo Xiong · 2019 · Cell Death and Disease
  54. AMP-activated protein kinase links acetyl-CoA homeostasis to BRD4 recruitment in acute myeloid leukemia.
    Yajian Jiang, T. Hu, Tao Wang, Xiang-Guo Shi, A. Kitano, Kenneth Eagle, Kevin A. Hoegenauer, M. Konopleva, Charles Y. Lin, N. L. Young et al. · 2019 · Blood
  55. Current Methodological Challenges of Single-Cell and Single-Nucleus RNA-Sequencing in Glomerular Diseases
    Dries Deleersnijder, Jasper Callemeyn, Ingrid Arijs, Maarten Naesens, Amaryllis H. Van Craenenbroeck, Diether Lambrechts, Ben Sprangers · 2021 · Journal of the American Society of Nephrology
  56. Th1 polarization defines the synovial fluid T cell compartment in oligoarticular juvenile idiopathic arthritis
    Amélie M. Julé, Kacie J. Hoyt, Kevin Wei, María Gutiérrez‐Arcelus, Maria L. Taylor, Julie Ng, James Arthur Lederer, Siobhan Case, Margaret H. Chang, Ezra M. Cohen et al. · 2021 · JCI Insight
  57. IL-17A–producing γδT cells promote muscle regeneration in a microbiota-dependent manner
    Alexander O. Mann, Bola S. Hanna, Andrés R. Muñoz-Rojas, Inga Sandrock, Immo Prinz, Christophe O. Benoist, Diane J. Mathis · 2022 · The Journal of Experimental Medicine
  58. Molecular spikes: a gold standard for single-cell RNA counting
    Christoph Ziegenhain, Gert‐Jan Hendriks, Michael Hagemann-Jensen, Rickard Sandberg · 2022 · Nature Methods
  59. Cellular heterogeneity and stem cells of vascular endothelial cells in blood vessel formation and homeostasis: Insights from single-cell RNA sequencing
    Taku Wakabayashi, Hisamichi Naito · 2023 · Frontiers in Cell and Developmental Biology
  60. A brain-specific angiogenic mechanism enabled by tip cell specialization
    Giel Schevenels, Pauline Cabochette, Michelle America, Arnaud Vandenborne, Line De Grande, Stefan Günther, Liqun He, Marc Dieu, Basile Christou, Marjorie Vermeersch et al. · 2024 · Nature
  61. A Guide to Single-Cell Transcriptomics in Adult Rodent Brain: The Medium Spiny Neuron Transcriptome Revisited
    Hanson Ho, Matt D. De Both, Ashley L. Siniard, Sasha Sharma, James H. Notwell, Michelle Wallace, Dino P. Leone, Amy Nguyen, Eric Zhao, Hannah Lee et al. · 2018 · Frontiers in Cellular Neuroscience
  62. Recent Developments in Single-Cell RNA-Seq of Microorganisms
    Yi Zhang, Jiaxin Gao, Yanyi Huang, Jianbin Wang · 2018 · Biophysical Journal
  63. Imprinted Cdkn1c genomic locus cell-autonomously promotes cell survival in cerebral cortex development
    Susanne Laukoter, Robert Beattie, Florian M. Pauler, Nicole Amberg, Keiichi I. Nakayama, Simon Hippenmeyer · 2020 · Nature Communications
  64. FB5P-seq: FACS-Based 5-Prime End Single-Cell RNA-seq for Integrative Analysis of Transcriptome and Antigen Receptor Repertoire in B and T Cells
    Noudjoud Attaf, Iñaki Cervera-Marzal, Chuang Dong, Laurine Gil, Amédée Renand, Lionel Spinelli, Pierre Milpied · 2020 · Frontiers in Immunology
  65. Single-cell genomics to understand disease pathogenesis
    Seitaro Nomura · 2020 · Journal of Human Genetics
  66. AAV-Txnip prolongs cone survival and vision in mouse models of retinitis pigmentosa
    Yunlu Xue, Sean K. Wang, Parimal C. Rana, Emma R. West, Christin M. Hong, Helian Feng, David M. Wu, Constance L. Cepko · 2021 · eLife
  67. Somatosensory neuron types and their neural networks as revealed via single-cell transcriptomics
    Kaikai Wang, Bing Cai, Yuran Song, Yan Chen, Xu Zhang · 2023 · Trends in Neurosciences
  68. Tools for Genomic and Transcriptomic Analysis of Microbes at Single-Cell Level
    Zixi Chen, Lei Chen, Weiwen Zhang · 2017 · Frontiers in Microbiology
  69. Application of single-cell sequencing in human cancer
    Mattias Rantalainen · 2017 · Briefings in Functional Genomics
  70. Dissecting human disease with single-cell omics: application in model systems and in the clinic
    Paulina M. Strzelecka, Anna Maria Ranzoni, Ana Cvejic · 2018 · Disease Models & Mechanisms
  71. TARGET-Seq: A Protocol for High-Sensitivity Single-Cell Mutational Analysis and Parallel RNA Sequencing
    Alba Rodríguez-Meira, Jennifer O’Sullivan, Haseeb Rahman, Adam J. Mead · 2020 · STAR Protocols
  72. SPEN is required for Xist upregulation during initiation of X chromosome inactivation
    Teresa Robert-Finestra, Beatrice F. Tan, Hegias Mira-Bontenbal, Erika Timmers, Cristina Gontan, Sarra Merzouk, Benedetto Daniele Giaimo, François Dossin, Wilfred F. J. van IJcken, John W.M. Martens et al. · 2021 · Nature Communications
  73. Low-input RNase footprinting for simultaneous quantification of cytosolic and mitochondrial translation
    Qianru Li, Haiwang Yang, Emily Kunce Stroup, Hongbin Wang, Zhe Ji · 2022 · Genome Research
  74. MARVEL: an integrated alternative splicing analysis platform for single-cell RNA sequencing data
    Wei Xiong Wen, Adam J. Mead, Supat Thongjuea · 2023 · Nucleic Acids Research
  75. An ependymal cell census identifies heterogeneous and ongoing cell maturation in the adult mouse spinal cord that changes dynamically on injury
    Aida Rodrigo Albors, Gail A. Singer, Enric Llorens-Bobadilla, Jonas Frisén, Andrew P. May, Chris Paul Ponting, Kate G. Storey · 2023 · Developmental Cell
  76. Impaired iron recycling from erythrocytes is an early hallmark of aging
    Patryk Slusarczyk, Pratik Kumar Mandal, Gabriela Zurawska, Marta Niklewicz, Komal Chouhan, Raghunandan Mahadeva, Aneta Jończy, Matylda Macias, Aleksandra Szybińska, Magdalena Cybulska et al. · 2023 · eLife
  77. snPATHO-seq, a versatile FFPE single-nucleus RNA sequencing method to unlock pathology archives
    Taopeng Wang, Michael J. Roach, Kate Harvey, Javier Escudero Morlanes, Beata Kiedik, Ghamdan Al‐Eryani, Alissa Greenwald, Nikolaos Kalavros, Felipe Segato Dezem, Yuling Ma et al. · 2024 · Communications Biology
  78. Adapting the Smart-seq2 Protocol for Robust Single Worm RNA-seq
    Lorrayne Serra, Dennis Z. Chang, Marissa G. Macchietto, Katherine Williams, Rabi Murad, Dihong Lu, Adler R. Dillman, Ali Mortazavi · 2018 · BIO-PROTOCOL
  79. Stem cell-derived cranial and spinal motor neurons reveal proteostatic differences between ALS resistant and sensitive motor neurons
    Disi An, Ryosuke Fujiki, Dylan E. Iannitelli, John W. Smerdon, Shuvadeep Maity, Matthew F. Rose, Alon Gelber, Elizabeth K. Wanaselja, Ilona Yagudayeva, Joun Y. Lee et al. · 2019 · eLife
  80. Transcriptome and chromatin landscape of iNKT cells are shaped by subset differentiation and antigen exposure
    Mallory Paynich Murray, Isaac Engel, Grégory Seumois, Sara Herrera de la Mata, Sandy Lisette Rosales, Ashu Sethi, Ashmitaa Logandha Ramamoorthy Premlal, Goo‐Young Seo, Jason Greenbaum, Pandurangan Vijayanand et al. · 2021 · Nature Communications
  81. Exploiting Single-Cell Tools in Gene and Cell Therapy
    Daniel Bode, Alyssa H. Cull, Juan A. Rubio-Lara, David G. Kent · 2021 · Frontiers in Immunology
  82. Targeted single-cell RNA sequencing of transcription factors enhances the identification of cell types and trajectories
    Alexandra V. Pokhilko, Adam E. Handel, Fabiola Curion, Viola Volpato, Emma S. Whiteley, Sunniva M. K. Bøstrand, Sarah E. Newey, Colin J. Akerman, Caleb Webber, Michael B. Clark et al. · 2021 · Genome Research
  83. Recent Advances in Population Genomics of Plant-Parasitic Nematodes
    Josselin Montarry, Benjamin Mimee, Étienne Danchin, Georgios Koutsovoulos, Dave T. Ste‐Croix, Éric Grenier · 2020 · Phytopathology
  84. MQuad enables clonal substructure discovery using single cell mitochondrial variants
    Aaron Wing Cheung Kwok, Chen Qiao, Rongting Huang, Mai Har Sham, Joshua W. K. Ho, Yuanhua Huang · 2022 · Nature Communications
  85. Simultaneous deep transcriptome and proteome profiling in a single mouse oocyte
    Yirong Jiang, Le Zhu, Lan‐Rui Cao, Qiong Wu, Jianbo Chen, Yu Wang, Jie Wu, Tianyu Zhang, Zhaolun Wang, Zhi-Ying Guan et al. · 2023 · Cell Reports
  86. Microfluidics for genome-wide studies involving next generation sequencing
    Sai Ma, Travis W. Murphy, Chang Lu · 2017 · Biomicrofluidics
  87. The Human Cell Atlas: Technical approaches and challenges
    Chung-Chau Hon, Jay W. Shin, Piero Carninci, Michael J. T. Stubbington · 2017 · Briefings in Functional Genomics
  88. Single Cell Omics: From Assay Design to Biomedical Application
    Wen-Yi Chen, Shumin Li, Anuja Shreeram Kulkarni, Lin Huang, Jing Cao, Kun Qian, Jingjing Wan · 2019 · Biotechnology Journal
  89. A novel immature natural killer cell subpopulation predicts relapse after cord blood transplantation
    Li Li, Han Chen, David Marín, Yuanxin Xi, Qi Miao, Jiangxing Lv, Pinaki Prosad Banerjee, Hila Shaim, May Daher, Rafet Başar et al. · 2019 · Blood Advances
  90. Disrupted function of lactate transporter MCT1 , but not MCT4 , in Schwann cells affects the maintenance of motor end‐plate innervation
    Filipa Bouçanova, Gill Pollmeier, Katalin Sándor, Carlos Eduardo Morado-Urbina, Jik Nijssen, Jean‐Jacques Médard, Luca Bartesaghi, Luc Pellerin, Camilla I. Svensson, Eva Hedlund et al. · 2020 · Glia
  91. Hypothalamic Rax+ tanycytes contribute to tissue repair and tumorigenesis upon oncogene activation in mice
    Wenhui Mu, Si Li, Jingkai Xu, Xize Guo, Haoda Wu, Zhenhua Chen, Lianyong Qiao, Gisela Helfer, Falong Lu, Chong Liu et al. · 2021 · Nature Communications
  92. Loss of TET reprograms Wnt signaling through impaired demethylation to promote lung cancer development
    Qin Xu, Chao Wang, Jiaxin Zhou, Zhi-Mei Xu, Juan Gao, Pengfei Sui, Colum P. Walsh, Hongbin Ji, Guoliang Xu · 2022 · Proceedings of the National Academy of Sciences
  93. Multigene phylogenetics of euglenids based on single-cell transcriptomics of diverse phagotrophs
    Gordon Lax, Martin Kolísko, Yana Eglit, W.J. Lee, Naoji Yubuki A, Anna Karnkowska, Brian S. Leander, Gertraud Burger, Patrick J. Keeling, Alastair G. B. Simpson · 2021 · Molecular Phylogenetics and Evolution
  94. An optimized FACS-free single-nucleus RNA sequencing (snRNA-seq) method for plant science research
    Kaimeng Wang, Caiyao Zhao, Sunhuan Xiang, Kunyu Duan, Xiaoli Chen, Xing Long Guo, Sunil Kumar Sahu · 2022 · Plant Science
  95. Third generation sequencing technologies applied to diagnostic microbiology: benefits and challenges in applications and data analysis
    Enrico Lavezzo, Luisa Barzon, Stefano Toppo, Giorgio Palù · 2016 · Expert Review of Molecular Diagnostics
  96. Sampling from Single Cells
    Paolo Actis · 2018 · Small Methods
  97. Bringing Renal Biopsy Interpretation Into the Molecular Age With Single-Cell RNA Sequencing
    Andrew F. Malone, Hao Wu, Benjamin D. Humphreys · 2017 · Seminars in Nephrology
  98. Avian transcriptomics: opportunities and challenges
    Elinor Jax, Michaël Wink, R.H. Kraus · 2018 · Journal für Ornithologie
  99. CpG island composition differences are a source of gene expression noise indicative of promoter responsiveness
    Michael David Morgan, John C. Marioni · 2018 · Genome biology
  100. Precision toxicology shows that troxerutin alleviates ochratoxin A–induced renal lipotoxicity
    Xuan Yang, Wentao Xu, Kunlun Huang, Boyang Zhang, Haomiao Wang, Xueqin Zhang, Lijing Gong, Yunbo Luo, Xiaoyun He · 2018 · The FASEB Journal