Mapping the genomic landscape of CRISPR-Cas9 cleavage

Cameron, Peter, Fuller, Chris K, Donohoue, Paul D, Jones, Brittnee N, Thompson, Matthew S, Carter, Matthew M, Gradia, Scott, Vidal, Bastien +13 more·2017·Nature Methods

Cited by (454)

Items 101–200 of 454

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  2. Molecular mechanisms, off‐target activities, and clinical potentials of genome editing systems
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  3. Systematic decomposition of sequence determinants governing CRISPR/Cas9 specificity
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  4. Computational Tools and Resources Supporting CRISPR-Cas Experiments
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  5. Genome-wide detection of CRISPR editing in vivo using GUIDE-tag
    Liang, Shun-Qing, Liu, Pengpeng, Smith, Jordan L., Mintzer, Esther, Maitland, Stacy, Dong, Xiaolong, Yang, Qiyuan, Lee, Jonathan, Haynes, Cole M., Zhu, Lihua Julie et al. · 2022 · Nature Communications
  6. CRISPR-based gene disruption and integration of high-avidity, WT1-specific T cell receptors improve antitumor T cell function
    Eliana Ruggiero, Erica Carnevale, Aaron Prodeus, Zulma Irene Magnani, Barbara Camisa, Ivan Merelli, Claudia Politano, Lorena Stasi, Alessia Potenza, Beatrice Claudia Cianciotti et al. · 2022 · Science Translational Medicine
  7. Transitioning from wet lab to artificial intelligence: a systematic review of AI predictors in CRISPR
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  8. Genetic Renal Diseases: The Emerging Role of Zebrafish Models
    Mohamed A. Elmonem, Sante Princiero Berlingerio, Lambertus P. van den Heuvel, Peter A.M. de Witte, Martin Lowe, Elena N. Levtchenko · 2018 · Cells
  9. Improving the sensitivity of in vivo CRISPR off-target detection with DISCOVER-Seq+
    Roger S. Zou, Yang Liu, Oscar E. Reyes Gaido, Maximilian F. Konig, Brian J. Mog, Leo L. Shen, Franklin J. Avilés-Vázquez, Alberto Marín-González, Taekjip Ha · 2023 · Nature Methods
  10. Baboon Envelope Pseudotyped “Nanoblades” Carrying Cas9/gRNA Complexes Allow Efficient Genome Editing in Human T, B, and CD34+ Cells and Knock-in of AAV6-Encoded Donor DNA in CD34+ Cells
    Alejandra Gutiérrez-Guerrero, María Jimena Abrey-Recalde, Philippe E. Mangeot, Caroline Costa, Ornéllie Bernadin, Séverine Perian, Floriane Fusil, Gisèle Froment, Adriana Martinez-Turtos, Adrien Krug et al. · 2021 · Frontiers in Genome Editing
  11. CRISPR-Cas12a exhibits metal-dependent specificity switching
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  12. TCR-T cell therapy: current development approaches, preclinical evaluation, and perspectives on regulatory challenges
    E. Golikova, A. Alshevskaya, S. Alrhmoun, N. Sivitskaya, Sergey V. Sennikov · 2024 · Journal of Translational Medicine
  13. Toward Gene Transfer Nanoparticles as Therapeutics
    Erin W. Kavanagh, Jordan J. Green · 2022 · Advanced Healthcare Materials
  14. CRISPR-Cas9 in vivo gene editing for transthyretin amyloidosis
    Julian David Gillmore, Ed J. Gane, Jörg Täubel, Justin Kao, Marianna Fontana, Michael L. Maitland, Jessica L. Seitzer, Daniel O'Connell, Kathryn Rose Walsh, Kristy M. Wood et al. · 2022 · Yearbook of pediatric endocrinology
  15. Effective use of sequence information to predict CRISPR-Cas9 off-target
    Zhong-Rui Zhang, Zhenran Jiang · 2022 · Computational and Structural Biotechnology Journal
  16. Combining Rapid Data Independent Acquisition and CRISPR Gene Deletion for Studying Potential Protein Functions: A Case of HMGN1
    Martin Mehnert, Wenxue Li, Chongde Wu, Barbora Šalovská, Yansheng Liu · 2019 · PROTEOMICS
  17. In vivo correction of cystic fibrosis mediated by PNA nanoparticles
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  18. Technologies and Computational Analysis Strategies for CRISPR Applications
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  19. Analysis of off-target effects in CRISPR-based gene drives in the human malaria mosquito
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  20. CRISPR Gene Editing of Human Primary NK and T Cells for Cancer Immunotherapy
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  21. TAPE-seq is a cell-based method for predicting genome-wide off-target effects of prime editor
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  22. Genome-wide detection of DNA double-strand breaks by in-suspension BLISS
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  23. Evaluation of Homology-Independent CRISPR-Cas9 Off-Target Assessment Methods
    Hemangi G. Chaudhari, Jon N Penterman, Holly J. Whitton, Sarah J. Spencer, Nicole Flanagan, Maria C. Lei Zhang, Elaine Huang, Aditya S. Khedkar, J. Mike Toomey, Courtney A. Shearer et al. · 2020 · The CRISPR Journal
  24. Next Generation Precision Medicine: CRISPR-mediated Genome Editing for the Treatment of Neurodegenerative Disorders
    Sudhanshu P. Raikwar, Nidhi Shankar Kikkeri, Ragha Chaitanya Sakuru, Daniyal Saeed, Haris Zahoor, Keerthivaas Premkumar, Shireen Mentor, Ramasamy Thangavel, Iuliia Dubova, Mohammad Ejaz Ahmed et al. · 2019 · Journal of Neuroimmune Pharmacology
  25. Translating CRISPR-Cas Therapeutics: Approaches and Challenges
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  26. CRISPECTOR provides accurate estimation of genome editing translocation and off-target activity from comparative NGS data
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  27. Comparative analysis of CRISPR off-target discovery tools following ex vivo editing of CD34(+) hematopoietic stem and progenitor cells
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  28. Massively targeted evaluation of therapeutic CRISPR off-targets in cells
    Pan, Xiaoguang, Qu, Kunli, Yuan, Hao, Xiang, Xi, Anthon, Christian, Pashkova, Liubov, Liang, Xue, Han, Peng, Corsi, Giulia I., Xu, Fengping et al. · 2022 · Nature Communications
  29. Personalised genome editing – The future for corneal dystrophies
    Tara Moore, Kathleen A. Christie, John Marshall, M. Andrew Nesbit · 2018 · Progress in Retinal and Eye Research
  30. Systematic in vitro profiling of off-target affinity, cleavage and efficiency for CRISPR enzymes
    Liyang Zhang, H. Tomas Rube, Christopher A. Vakulskas, Mark A. Behlke, Harmen J. Bussemaker, Miles A. Pufall · 2020 · Nucleic Acids Research
  31. Global-scale CRISPR gene editor specificity profiling by ONE-seq identifies population-specific, variant off-target effects
    Karl Petri, Daniel Y. Kim, Kanae E. Sasaki, Matthew C. Canver, Xiao Wang, Hina Shah, Hyunho Lee, Joy E. Horng, Kendell Clement, Sowmya Iyer et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  32. Revolutionizing in vivo therapy with CRISPR/Cas genome editing: breakthroughs, opportunities and challenges
    Arturo Macarrón Palacios, Patrick Korus, Bodo G. C. Wilkens, Najmeh Heshmatpour, Sarita R. Patnaik · 2024 · Frontiers in Genome Editing
  33. Enhancing Specificity, Precision, Accessibility, Flexibility, and Safety to Overcome Traditional CRISPR/Cas Editing Challenges and Shape Future Innovations
    Muna Alariqi, Mohamed Ramadan, Lu Yu, Fengjiao Hui, Amjad Hussain, Xiaofeng Zhou, Yu Yu, Xianlong Zhang, Shuangxia Jin · 2025 · Advanced Science
  34. Therapeutic genome editing in cardiovascular diseases
    Masataka Nishiga, Lei S. Qi, Joseph C. Wu · 2020 · Advanced Drug Delivery Reviews
  35. GOTI, a method to identify genome-wide off-target effects of genome editing in mouse embryos
    Erwei Zuo, Yidi Sun, Wei Wu, Tanglong Yuan, Wenqin Ying, Hao Sun, Liyun Yuan, Lars Michael Steinmetz, Yixue Li, Hui Yang · 2020 · Nature Protocols
  36. Negative DNA supercoiling induces genome-wide Cas9 off-target activity
    Matthew D. Newton, Marialucrezia Losito, Quentin M. Smith, Nishita Parnandi, Benjamin J. Taylor, Pınar Akçakaya, Marcello Maresca, Patrick van Eijk, Simon Huw Reed, Simon J. Boulton et al. · 2023 · Molecular Cell
  37. Massively parallel analysis of single-molecule dynamics on next-generation sequencing chips
    Javier Aguirre Rivera, Guanzhong Mao, Сабанцев Антон Владимирович, Mikhail Panfilov, Q. Hou, M. Lindell, Christelle Chanez, Félix Ritort, Martin Jínek, Sebastian Deindl · 2024 · Science
  38. CRISPRoffT: comprehensive database of CRISPR/Cas off-targets
    Grant Wang, Xiaona Liu, Aoqi Wang, Jianguo Wen, Pora Kim, Qianqian Song, Xiaona Liu, Xiaobo Zhou · 2024 · Nucleic Acids Research
  39. CRISPR/Cas9 Genome Engineering in Engraftable Human Brain-Derived Neural Stem Cells
    Daniel P. Dever, Samantha G. Scharenberg, Joab Camarena, Eric Kildebeck, Joseph T. Clark, Renata M. Martin, Rasmus Otkjær Bak, Yuming Tang, Monika Dohse, Johannes A. Birgmeier et al. · 2019 · iScience
  40. Identifying genome-wide off-target sites of CRISPR RNA–guided nucleases and deaminases with Digenome-seq
    Daesik Kim, Beum‐Chang Kang, Jin‐Soo Kim · 2021 · Nature Protocols
  41. A kinetic model predicts SpCas9 activity, improves off-target classification, and reveals the physical basis of targeting fidelity
    Behrouz Eslami-Mossallam, Misha Klein, Constantijn P. van der Smagt, Koen van der Sanden, Stephen K. Jones, John A. Hawkins, Ilya J. Finkelstein, Martin Depken · 2022 · Nature Communications
  42. Paving the way towards precise and safe CRISPR genome editing
    Paweł Śledziński, Magdalena Dabrowska, Mateusz Nowaczyk, Marta Olejniczak · 2021 · Biotechnology Advances
  43. Building CRISPR Gene Therapies for the Central Nervous System
    Sally E. Salomonsson, Claire Dudley Clelland · 2024 · JAMA Neurology
  44. Generation of a Commercial-Scale Founder Population of Porcine Reproductive and Respiratory Syndrome Virus Resistant Pigs Using CRISPR-Cas
    Brian T. Burger, Benjamin P. Beaton, Matthew A. Campbell, Benjamin Thomas Brett, Melissa S. Rohrer, Sarah Plummer, Dylan Barnes, Ke Jiang, Sudhir Naswa, Jeremy Lange et al. · 2024 · The CRISPR Journal
  45. Ultra-deep sequencing validates safety of CRISPR/Cas9 genome editing in human hematopoietic stem and progenitor cells
    M. Kyle Cromer, Valentin V. Barsan, Erich B. Jaeger, Mengchi Wang, Jessica P. Hampton, Feng Chen, Drew Kennedy, Jenny Xiao, Irina Khrebtukova, Ana Granat et al. · 2022 · Nature Communications
  46. Chimeric antigen receptor T-cell therapy for T-cell acute lymphoblastic leukemia
    Bernice Ling Zhi Oh, Natasha Vinanica, Desmond Wong, Dario Campana · 2024 · Haematologica
  47. CRISPR-Cap: multiplexed double-stranded DNA enrichment based on the CRISPR system
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  48. Genome Editing
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  49. crisprSQL: a novel database platform for CRISPR/Cas off-target cleavage assays
    Störtz, Florian, Minary, Peter · 2021 · Nucleic Acids Research
  50. On-Target CRISPR/Cas9 Activity Can Cause Undesigned Large Deletion in Mouse Zygotes
    Alexey N. Korablev, Varvara Lukyanchikova, Irina A. Serova, Нариман Рашитович Баттулин · 2020 · International Journal of Molecular Sciences
  51. CRISPR-M: Predicting sgRNA off-target effect using a multi-view deep learning network
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  52. Impact of Genetic Variation on CRISPR-Cas Targeting
    Matthew C. Canver, J. Keith Joung, Luca Pinello · 2018 · The CRISPR Journal
  53. mRNA and gene editing: Late breaking therapies in liver diseases
    Nerea Zabaleta, Laura Torella, Nicholas D. Weber, Gloria González‐Aseguinolaza · 2022 · Hepatology
  54. A humanized knockin mouse model of Duchenne muscular dystrophy and its correction by CRISPR-Cas9 therapeutic gene editing
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  55. High-Specificity CRISPR-Mediated Genome Engineering in Anti-BCMA Allogeneic CAR T Cells Suppresses Allograft Rejection in Preclinical Models
    Émilie Degagné, Paul D. Donohoue, Suparna Roy, Jessica Scherer, Tristan W. Fowler, Ryan T. Davis, Gustavo A. Reyes, George Kwong, Morena Stanaway, Vanina Larroca Vicena et al. · 2024 · Cancer Immunology Research
  56. Strategies for High-Efficiency Mutation Using the CRISPR/Cas System
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  57. Improved Cas9 activity by specific modifications of the tracrRNA
    Tristan A. Scott, Ryan Z. Urak, Citradewi Soemardy, Kevin V. Morris · 2019 · Scientific Reports
  58. Emerging Gene Therapeutics for Epidermolysis Bullosa under Development
    Johannes Bischof, Markus Hierl, Ulrich Koller · 2024 · International Journal of Molecular Sciences
  59. An effective vaginal gel to deliver CRISPR/Cas9 system encapsulated in poly (β-amino ester) nanoparticles for vaginal gene therapy
    Gang Niu, Zhuang Jin, Chong Zhang, Dan He, Xueqin Gao, Chenming Zou, Wei Zhang, Jiahui Ding, Bhudev Chandra Das, Konstantin Severinov et al. · 2020 · EBioMedicine
  60. Benchmarking and integrating genome-wide CRISPR off-target detection and prediction
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  61. Packaged delivery of CRISPR–Cas9 ribonucleoproteins accelerates genome editing
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  62. The Off-Targets of Clustered Regularly Interspaced Short Palindromic Repeats Gene Editing
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  64. Illuminating the genome-wide activity of genome editors for safe and effective therapeutics
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  66. DL-CRISPR: A Deep Learning Method for Off-Target Activity Prediction in CRISPR/Cas9 With Data Augmentation
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  69. Unexpected genomic rearrangements at targeted loci associated with CRISPR/Cas9-mediated knock-in
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  72. Linking CRISPR–Cas9 double-strand break profiles to gene editing precision with BreakTag
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