ModelFinder: fast model selection for accurate phylogenetic estimates
Kalyaanamoorthy, Subha, Minh, Bui Quang, Wong, Thomas K F, von Haeseler, Arndt, Jermiin, Lars S·2017·Nature Methods
Cited by (1,026)
Items 301–400 of 1,026
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- Comparative and phylogenetic analyses of six Kenya Polystachya (Orchidaceae) species based on the complete chloroplast genome sequencesHui Jiang, Jing Tian, Jiaxin Yang, Xiang Dong, Zhixiang Zhong, Geoffrey Mwachala, Caifei Zhang, Guang‐Wan Hu, Qingfeng Wang · 2022 · BMC Plant Biology
- Taxonomic Sampling and Rare Genomic Changes Overcome Long-Branch Attraction in the Phylogenetic Placement of PseudoscorpionsAndrew Z. Ontano, Guilherme Gainett, Shlomi Aharon, Jesús A. Ballesteros, Ligia R. Benavides, Kevin F Corbett, Efrat Gavish‐Regev, Mark Stephen Harvey, Scott A. Monsma, Carlos E. Santibáñez‐López et al. · 2021 · Molecular Biology and Evolution
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- The evolution of functional complexity within the β-amylase gene family in land plantsMatthias Thalmann, Mario Coiro, Tiago Meier, Thomas Wicker, Samuel C. Zeeman, Diana Santelia · 2019 · BMC Evolutionary Biology
- Towards a plant model for enigmatic U‐to‐C RNA editing: the organelle genomes, transcriptomes, editomes and candidate RNA editing factors in the hornwort Anthoceros agrestisPhilipp Gerke, Péter Szövényi, Anna Neubauer, Henning Lenz, Bernard Gutmann, Rose McDowell, Ian Small, Mareike Schallenberg‐Rüdinger, Volker Knoop · 2019 · New Phytologist
- Virus-like transposons cross the species barrier and drive the evolution of genetic incompatibilitiesWiden, Sonya A., Bes, Israel Campo, Koreshova, Alevtina, Pliota, Pinelopi, Krogull, Daniel, Burga, Alejandro · 2023 · Science
- Resolving the relationships of clams and cockles: dense transcriptome sampling drastically improves the bivalve tree of lifeSarah Lemer, Rüdiger Bieler, Gonzalo Giribet · 2019 · Proceedings of the Royal Society B Biological Sciences
- Novel partiti-like viruses are conditional mutualistic symbionts in their normal lepidopteran host, African armyworm, but parasitic in a novel host, Fall armywormPengjun Xu, Liyu Yang, Xianming Yang, Tong Li, Robert I. Graham, Kongming Wu, Kenneth L. Wilson · 2020 · PLoS Pathogens
- Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamicsAdam L. Healey, Bryan Thomas Piatkowski, John T. Lovell, Avinash Sreedasyam, Sarah B. Carey, Sujan Mamidi, Shengqiang Shu, Christopher Plott, Jerry W. Jenkins, Travis J. Lawrence et al. · 2023 · Nature Plants
- Advances in the reconstruction of the spider tree of life: A roadmap for spider systematics and comparative studiesSiddharth Kulkarni, Hannah Marie Wood, Gustavo Hormiga · 2023 · Cladistics
- Phylogenetic analysis of Antarctic notothenioids illuminates the utility of RADseq for resolving Cenozoic adaptive radiationsThomas J. Near, Daniel J. MacGuigan, Elyse Parker, Carl D. Struthers, CHRIS D. JONES, Alex Dornburg · 2018 · Molecular Phylogenetics and Evolution
- Evolution in the Genus Rhinella: A Total Evidence Phylogenetic Analysis of Neotropical True Toads (Anura: Bufonidae)Martín O. Pereyra, Boris L. Blotto, Diego Baldo, Juan C. Chaparro, Santiago R. Ron, Agustín J. Elias‐Costa, Patricia P. Iglesias, Pablo Javier Venegas, Maria Tereza C. Thomé, Jhon Jairo Ospina‐Sarria et al. · 2021 · Bulletin of the American Museum of Natural History
- Diversity and evolution of the vertebrate chemoreceptor gene repertoireMaxime Policarpo, Maude W. Baldwin, Didier Casañe, Walter Salzburger · 2024 · Nature Communications
- The Ly6/uPAR protein Bouncer is necessary and sufficient for species-specific fertilizationSarah Herberg, Krista R. Gert, Alexander Schleiffer, Andrea Pauli · 2018 · Science
- Uncoupled activation and cyclization in catmint reductive terpenoid biosynthesisBenjamin R. Lichman, Mohamed Omar Kamileen, Gabriel R. Titchiner, Gerhard Saalbach, Clare E. M. Stevenson, David M. Lawson, Sarah Ellen O'Connor · 2018 · Nature Chemical Biology
- Broad phylogenetic analysis of cation/proton antiporters reveals transport determinantsGal Masrati, Manish Dwivedi, Abraham Rimon, Yael Gluck-Margolin, Amit Kessel, Haim Ashkenazy, Itay Mayrose, Etana Padan, Nir Ben‐Tal · 2018 · Nature Communications
- A comprehensive molecular phylogeny of Geometridae (Lepidoptera) with a focus on enigmatic small subfamiliesLeidys Murillo‐Ramos, Gunnar Brehm, Pasi Sihvonen, Axel Hausmann, Sille Holm, Hamid Reza Ghanavi, Erki Õunap, Andro Truuverk, Hermann S. Staude, Egbert Friedrich et al. · 2019 · PeerJ
- Contrasting Gene Decay in Subterranean Vertebrates: Insights from Cavefishes and Fossorial MammalsMaxime Policarpo, Julien Fumey, Philippe Lafargeas, Delphine Naquin, Claude Thermes, Magali Naville, Corentin Dechaud, Jean‐Nicolas Volff, Cédric Cabau, Christophe Klopp et al. · 2020 · Molecular Biology and Evolution
- Expanded Diversity and Phylogeny of mer Genes Broadens Mercury Resistance Paradigms and Reveals an Origin for MerA Among Thermophilic ArchaeaChristos A. Christakis, T. Barkay, E. Boyd · 2021 · Frontiers in Microbiology
- Isolation of a methyl-reducing methanogen outside the EuryarchaeotaKejia Wu, Lei Zhou, Guillaume Tahon, Laiyan Liu, Li Jiang, Jianchao Zhang, Fengfeng Zheng, Chengpeng Deng, Wenhao Han, Liping Bai et al. · 2024 · Nature
- Integrative approach using Yersinia pestis genomes to revisit the historical landscape of plague during the Medieval PeriodAmine Namouchi, Meriam Guellil, Oliver Kersten, Stephanie Hänsch, Claudio Ottoni, Boris V. Schmid, Elsa Pacciani, Luisa Quaglia, Marco Vermunt, Egil Lindhart Bauer et al. · 2018 · Proceedings of the National Academy of Sciences
- Chloroplast Genome Sequence of Artemisia scoparia: Comparative Analyses and Screening of Mutational HotspotsShabina Iram, Muhammad Qasim Hayat, Muhammad Nouman Tahir, Alvina Gul, Abdullah Abdullah, Ibrar Ahmed · 2019 · Plants
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- Novel RNA viruses associated with Plasmodium vivax in human malaria and Leucocytozoon parasites in avian diseaseJustine Charon, Matthew J. Grigg, John‐Sebastian Eden, Kim A. Piera, Hafsa Rana, Timothy William, Karrie A. Rose, Miles P. Davenport, Nicholas M. Anstey, Edward Charles Holmes · 2019 · PLoS Pathogens
- A nitrogenase-like enzyme system catalyzes methionine, ethylene, and methane biogenesisJustin A. North, Adrienne B. Narrowe, Weili Xiong, Kathryn M. Byerly, Guanqi Zhao, Sarah J. Young, Srividya Murali, John A. Wildenthal, William R. Cannon, Kelly C. Wrighton et al. · 2020 · Science
- Discovery and characterization of a novel family of prokaryotic nanocompartments involved in sulfur metabolismRobert J. Nichols, Benjamin J. LaFrance, Naiya R. Phillips, Devon R. Radford, Luke M. Oltrogge, Luis E. Valentin-Alvarado, Amanda J. Bischoff, Eva Nogales, David F. Savage · 2021 · eLife
- Detection and Typing of Plasmids in Acinetobacter baumannii Using rep Genes Encoding Replication Initiation ProteinsMargaret M. C. Lam, Jonathan Koong, Kathryn E. Holt, Ruth M. Hall, Mohammad Hamidian · 2022 · Microbiology Spectrum
- Guanidinium export is the primal function of SMR family transportersAli A. Kermani, Christian B. Macdonald, Roja Gundepudi, Randy B Stockbridge · 2018 · Proceedings of the National Academy of Sciences
- Characterization of the complete chloroplast genome sequence of Dalbergia species and its phylogenetic implicationsYun Chun Song, Yongjiang Zhang, Jin Xu, Weimin Li, Mingfu Li · 2019 · Scientific Reports
- Integrative taxonomy, biogeography and conservation of freshwater mussels (Unionidae) in RussiaИван Николаевич Болотов, Alexander Vasilevich Kondakov, Ekaterina S. Konopleva, Ilya V. Vikhrev, Olga V. Aksenova, Andrey S. Aksenov, Yulia V. Bespalaya, Alexey V. Borovskoy, Данилов Петр Петрович, Геннадий Александрович Дворянкин et al. · 2020 · Scientific Reports
- SepF is the FtsZ anchor in archaea, with features of an ancestral cell division systemN Pende, Adrià Sogues, Daniela Megrian, Anna Sartori-Rupp, Patrick England, Hayk Palabikyan, Simon K.‐M. R. Rittmann, Martín Graña, Anne Marie Wehenkel, Pedro M. Alzari et al. · 2021 · Nature Communications
- Phylogenomic Analysis of the Phylum Nematoda: Conflicts and Congruences With Morphology, 18S rRNA, and MitogenomesMohammed Ismail Ahmed, Nickellaus G. Roberts, Funmilola Adediran, Ashleigh B. Smythe, Kevin M. Kocot, Oleksandr V. Holovachov · 2022 · Frontiers in Ecology and Evolution
- Ecogenomics sheds light on diverse lifestyle strategies in freshwater CPRM. Chiriac, Paul-Adrian Bulzu, A. Andrei, Y. Okazaki, S. Nakano, M. Haber, V. Kavagutti, Paul Layoun, R. Ghai, M. Salcher · 2021 · Microbiome
- Solanum americanum genome-assisted discovery of immune receptors that detect potato late blight pathogen effectorsXiao Lin, Yuxin Jia, Robert Heal, Maxim Prokchorchik, Maria Sindalovskaya, Andrea Carolina Olave-Achury, Moffat Makechemu, Sebastian Fairhead, Azka Noureen, Jung Heo et al. · 2023 · Nature Genetics
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