ModelFinder: fast model selection for accurate phylogenetic estimates

Kalyaanamoorthy, Subha, Minh, Bui Quang, Wong, Thomas K F, von Haeseler, Arndt, Jermiin, Lars S·2017·Nature Methods

DOI 10.1038/nmeth.4285

Cited by (1,026)

Items 501–600 of 1,026

Magnesium transporter Gene Family: Genome-Wide Identification and Characterization in Theobroma cacao, Corchorus capsularis, and Gossypium hirsutum of Family Malvaceae
Parviz Heidari, Abdullah Abdullah, Sahar Faraji, Péter Poczai · 2021 · Agronomy
Genome-wide characterization and functional analysis of class III peroxidase gene family in soybean reveal regulatory roles of GsPOD40 in drought tolerance
Muqadas Aleem, Awais Riaz, Qasim Saleem Raza, Maida Aleem, Muhammad Aslam, Keke Kong, Rana Muhammad Atif, Muhammad Kashif, Javaid Akhter Bhat, Tuanjie Zhao · 2021 · Genomics
Emergence and global spread of Listeria monocytogenes main clinical clonal complex
Alexandra Moura, Noémie Lefrancq, Alexandre Leclercq, Thierry Wirth, Vítor Borges, Brent Gilpin, Timothy J. Dallman, Joachim Frey A, Eelco Franz, Eva Møller Nielsen et al. · 2021 · Science Advances
A divide-and-conquer phylogenomic approach based on character supermatrices resolves early steps in the evolution of the Archaea
Monique Aouad, Jean‐Pierre Flandrois, Frédéric Jauffrit, Manolo Gouy, Simonetta Gribaldo, Céline Brochier‐Armanet · 2022 · BMC Ecology and Evolution
Phylogenomics of braconid wasps (Hymenoptera, Braconidae) sheds light on classification and the evolution of parasitoid life history traits
Jovana M. Jasso‐Martínez, Bernardo F. Santos, Alejandro Zaldívar‐Riverón, José Fernández-Triana, Barbara J. Sharanowski, Robin Richter, Jeremy R. Dettman, Bonnie B. Blaimer, Seán G. Brady, Robert R. Kula · 2022 · Molecular Phylogenetics and Evolution
Mitochondrial DNA and trade data support multiple origins of Helicoverpa armigera (Lepidoptera, Noctuidae) in Brazil
Wee Tek Tay, Tom Walsh, Sharon Joy Downes, Craig J. Anderson, Lars Sommer Jermiin, Thomas K. F. Wong, Melissa Claire Piper, Ester Silva Chang, Isabella Barony Macedo, Cecília Czepak et al. · 2017 · Scientific Reports
The Evolution of Reverse Gyrase Suggests a Nonhyperthermophilic Last Universal Common Ancestor
Ryan J. Catchpole, Patrick Forterre · 2019 · Molecular Biology and Evolution
Marine Sediments Illuminate Chlamydiae Diversity and Evolution
Jennah E. Dharamshi, Daniel Tamarit, Laura Eme, Courtney W. Stairs, Joran Martijn, Félix Homa, Steffen L. Jørgensen, Anja Spang, Thijs J. G. Ettema · 2020 · Current Biology
Pseudoscorpion Wolbachia symbionts: diversity and evidence for a new supergroup S
Emilie Lefoulon, Travis Clark, Fanni Borvető, Marco Perriat‐Sanguinet, Catherine Moulia, Barton E. Slatko, Laurent Gavotte · 2020 · BMC Microbiology
The evolution of social parasitism in Formica ants revealed by a global phylogeny
Marek L. Borowiec, Stefan P. Cover, Christian Rabeling · 2021 · Proceedings of the National Academy of Sciences
Cultivation of a vampire: 'Candidatus Absconditicoccus praedator'.
M. Yakimov, A. Merkel, V. Gaisin, M. Pilhofer, E. Messina, J. Hallsworth, A. Klyukina, E. Tikhonova, V. Gorlenko · 2021 · Environmental Microbiology
The evolutionary drivers and correlates of viral host jumps
Cedric C.S. Tan, Lucy van Dorp, François Balloux · 2024 · Nature Ecology & Evolution
Mapping glycoprotein structure reveals Flaviviridae evolutionary history
Jonathon C. O. Mifsud, Spyros Lytras, Michael R. Oliver, Kamilla Toon, Vincenzo A. Costa, Edward Charles Holmes, Joe Grove · 2024 · Nature
Genomic Insights Into Plant-Growth-Promoting Potentialities of the Genus Frankia
Imen Nouioui, Carlos Cortés-Albayay, Lorena Carro, Jean Franco Castro, Maher Gtari, Faten Ghodhbane‐Gtari, Hans‐Peter Klenk, Louis S. Tisa, Vartul Sangal, Michael Goodfellow · 2019 · Frontiers in Microbiology
Genus-wide Yersinia core-genome multilocus sequence typing for species identification and strain characterization
Cyril Savin, Alexis Criscuolo, Julien Guglielmini, Anne‐Sophie Le Guern, Élisabeth Carniel, Javier Pizarro‐Cerdá, Sylvain Brisse · 2019 · Microbial Genomics
Putative new plant viruses associated with Plasmopara viticola ‐infected grapevine samples
Marco Chiapello, Julio Rodríguez‐Romero, Luca Nerva, Marco Forgia, Walter Chitarra, Marı́a A. Ayllón, Massimo Turina · 2019 · Annals of Applied Biology
Sex in Symbiodiniaceae dinoflagellates: genomic evidence for independent loss of the canonical synaptonemal complex
Sarah Shah, Yibi Chen, Debashish Bhattacharya, Cheong Xin Chan · 2020 · Scientific Reports
A phylogenomic approach resolves the backbone of Prunus (Rosaceae) and identifies signals of hybridization and allopolyploidy
Richard G.J. Hodel, Elizabeth A. Zimmer, Jun Wen · 2021 · Molecular Phylogenetics and Evolution
Genome size evolution in the diverse insect order Trichoptera
Jacqueline Heckenhauer, Paul B. Frandsen, John S. Sproul, Zheng Li, Juraj Paule, Amanda M. Larracuente, Peter J. Maughan, Michael S. Barker, Julio V. Schneider, Russell J. Stewart et al. · 2022 · GigaScience
Sperm membrane proteins DCST1 and DCST2 are required for sperm-egg interaction in mice and fish
Taichi Noda, Andreas Blaha, Yoshitaka Fujihara, Krista R. Gert, Chihiro Emori, Victoria E. Deneke, Seiya Oura, Karin Panser, Yonggang Lu, Sara Berent et al. · 2022 · Communications Biology
UG/Abi: a highly diverse family of prokaryotic reverse transcriptases associated with defense functions
Mario Rodríguez Mestre, Linyi Alex Gao, Shiraz Ali Shah, Adrián López-Beltrán, Alejandro González-Delgado, Francisco Martínez‐Abarca, Jaime Iranzo, Modesto Redrejo‐Rodríguez, Feng Zhang, Nicolás Toro · 2022 · Nucleic Acids Research
Colocalization and potential interactions of Endozoicomonas and chlamydiae in microbial aggregates of the coral Pocillopora acuta
Justin Maire, Kshitij Tandon, Astrid Collingro, Allison van de Meene, Katarina Damjanovic, Cecilie Ravn Gøtze, Sophie Stephenson, Gayle K. Philip, Matthias Horn, Neal E. Cantin et al. · 2023 · Science Advances
OFPT: a one-stop software for fungal phylogeny
Xiang‐Yu Zeng, TJ Tan, FH Tian, Y Wang, Ting‐Chi Wen · 2023 · Mycosphere
Exon-Capture-Based Phylogeny and Diversification of the Venomous Gastropods (Neogastropoda, Conoidea)
Jawad Abdelkrim, Laetitia Aznar-Cormano, Alexander E. Fedosov, Yuri Kantor, Pierre Lozouet, Mark A. Phuong, Paul Zaharias, Nicolas Puillandre · 2018 · Molecular Biology and Evolution
Confident phylogenetic identification of uncultured prokaryotes through long read amplicon sequencing of the 16S‐ITS‐23S rRNA operon
Joran Martijn, Anders E. Lind, Max Emil Schön, Ian Spiertz, Lina Juzokaite, Ignas Bunikis, Olga Vinnere Pettersson, Thijs J. G. Ettema · 2019 · Environmental Microbiology
Historical contingency shapes adaptive radiation in Antarctic fishes
Jacob M. Daane, Alex Dornburg, Patrick J. Smits, Daniel J. MacGuigan, Michael Brent Hawkins, Thomas J. Near, H. William Detrich, Matthew P. Harris · 2019 · Nature Ecology & Evolution
The radiation of macaques out of Africa: Evidence from mitogenome divergence times and the fossil record
Christian Roos, Maximilian Kothe, David M. Alba, Eric Delson, Dietmar P. Zinner · 2019 · Journal of Human Evolution
Respiratory disease due to mixed viral infections in poultry flocks in Egypt between 2017 and 2018: Upsurge of highly pathogenic avian influenza virus subtype H5N8 since 2018
Kareem E. Hassan, Magdy F. El‐Kady, Azza A. El-Sawah, Christine Luttermann, Rokshana Parvin, Salama A.S. Shany, Martin Beer, Timm Harder · 2019 · Transboundary and Emerging Diseases
Reanalyzing the Palaeoptera problem – The origin of insect flight remains obscure
Sabrina Simon, Alexander Blanke, Karen Meusemann · 2018 · Arthropod Structure & Development
Phylogenomic fingerprinting of tempo and functions of horizontal gene transfer within ochrophytes
R. Dorrell, Adrien Villain, Benoît Perez-Lamarque, Guillemette Audren de Kerdrel, G. Mccallum, A. K. Watson, Ouardia Ait-Mohamed, A. Alberti, E. Corre, K. Frischkorn et al. · 2021 · Proceedings of the National Academy of Sciences of the United States of America
Resolving cryptic species complexes in marine protists: phylogenetic haplotype networks meet global DNA metabarcoding datasets
Daniele De Luca, Roberta Piredda, Diana Sarno, Wiebe H. C. F. Kooistra · 2021 · The ISME Journal
A Comprehensive Phylogenetic Analysis of the Serpin Superfamily
Matthew A. Spence, Matthew D Mortimer, Ashley M. Buckle, Bùi Quang Minh, Colin J. Jackson · 2021 · Molecular Biology and Evolution
Field and classroom initiatives for portable sequence-based monitoring of dengue virus in Brazil
Talita Adelino, Marta Giovanetti, Vagner Fonseca, Joilson Xavier, Álvaro Salgado, Valdinete Alves do Nascimento, Luiz Henrique Ferraz Demarchi, Marluce Aparecida Assunção Oliveira, Vinicius Lemes da Silva, Arabela Leal e Silva de Mello et al. · 2021 · Nature Communications
Phylogenomic relationships and species identification of the olive genus Olea (Oleaceae)
Wenpan Dong, Jiahui Sun, Yanlei Liu, Chao Xu, Yiheng Wang, Zhili Suo, Shiliang Zhou, Zhixiang Zhang, Jun Wen · 2021 · Journal of Systematics and Evolution
Genome-wide association study in quinoa reveals selection pattern typical for crops with a short breeding history
Dilan S. R. Patiranage, Elodie Rey, Nazgol Emrani, Gordon B. Wellman, Karl Schmid, Sandra M. Schmöckel, Mark A. Tester, Christian Jung · 2022 · eLife
The first cultivated representatives of the actinobacterial lineage OPB41 isolated from subsurface environments constitute a novel order Anaerosomatales
Maria A. Khomyakova, Daria G. Zavarzina, Alexander Y. Merkel, Alexandra A. Klyukina, Valeria A. Pikhtereva, Sergey N. Gavrilov, A. I. Slobodkin · 2022 · Frontiers in Microbiology
Comparative genomic analysis and proposal of Clostridium yunnanense sp. nov., Clostridium rhizosphaerae sp. nov., and Clostridium paridis sp. nov., three novel Clostridium sensu stricto endophytes with diverse capabilities of acetic acid and ethanol production
Cong-Jian Li, Zhen Zhang, Peng-Chao Zhan, Ai-Ping Lv, Panpan Li, Lan Liu, Wen‐Jun Li, Ling‐Ling Yang, Xiao‐Yang Zhi · 2022 · Anaerobe
Reverse-zoonoses of 2009 H1N1 pandemic influenza A viruses and evolution in United States swine results in viruses with zoonotic potential
Alexey Markin, Giovana Ciacci Zanella, Zebulun W. Arendsee, Jianqiang Zhang, Karen M. Krueger, Phillip Charles Gauger, Amy L. Vincent Baker, Tavis K. Anderson · 2023 · PLoS Pathogens
Pan-transcriptomic analysis reveals alternative splicing control of cold tolerance in rice
Yuanyuan Zhong, Yuhong Luo, Jinliang Sun, Xuemei Qin, Ping Gan, Zu-Wen Zhou, Yongqing Qian, Ru-Peng Zhao, Zhiyuan Zhao, Wenguo Cai et al. · 2024 · The Plant Cell
Persistent activity of aerobic methane-oxidizing bacteria in anoxic lake waters due to metabolic versatility
Sina Schorn, Jon S. Graf, Sten Littmann, Philipp F. Hach, Gaute Lavik, Daan R. Speth, Carsten Johnny Schubert, Marcel M. M. Kuypers, Jana Milucka · 2024 · Nature Communications
Highly pathogenic avian influenza A(H5N1) virus infections on fur farms connected to mass mortalities of black-headed gulls, Finland, July to October 2023
Lauri Kareinen, Niina Tammiranta, Ari Kauppinen, Bianca Zecchin, Ambra Pastori, Isabella Monne, Calogero Terregino, Edoardo Giussani, Riikka Kaarto, Veera K. Karkamo et al. · 2024 · Eurosurveillance
Endophytic Colletotrichum species from Dendrobium spp. in China and Northern Thailand
Xiaoya Ma, Sureeporn Nontachaiyapoom, Ruvishika S. Jayawardena, Kevin D. Yde, Eleni Gentekaki, Sixuan Zhou, Yixin Qian, Ting‐Chi Wen, Ji‐Chuan Kang · 2018 · MycoKeys
Comparison of transcriptomes from two chemosensory organs in four decapod crustaceans reveals hundreds of candidate chemoreceptor proteins
Mihika T. Kozma, Hanh Ngo-Vu, Yuen Yan Wong, Neal S. Shukla, Shrikant Pawar, Adriano Senatore, Manfred Schmidt, Charles D. Derby · 2020 · PLoS ONE
Linking Branch Lengths across Sets of Loci Provides the Highest Statistical Support for Phylogenetic Inference
Duchêne, David A, Tong, K Jun, Foster, Charles S P, Duchêne, Sebastián, Lanfear, Robert, Ho, Simon Y W · 2020 · Molecular Biology and Evolution
TRAPID 2.0: a web application for taxonomic and functional analysis of de novo transcriptomes
François Bucchini, Andrea Del Cortona, Łukasz Kreft, Alexander Botzki, Michiel Van Bel, Klaas Vandepoele · 2021 · Nucleic Acids Research
Ammonia-oxidizing bacteria and fungal denitrifier diversity are associated with N2O production in tropical soils
Késia Silva Lourenço, Ohana Y. A. Costa, Heitor Cantarella, Eiko E. Kuramae · 2022 · Soil Biology and Biochemistry
Massive gene rearrangements of mitochondrial genomes and implications for the phylogeny of Trichoptera (Insecta)
Xinyu Ge, Lang Peng, Alfried P. Vogler, John C. Morse, Lianfang Yang, Changhai Sun, Beixin Wang · 2022 · Systematic Entomology
The blast pathogen effector AVR-Pik binds and stabilizes rice heavy metal-associated (HMA) proteins to co-opt their function in immunity
Kaori Oikawa, Koki Fujisaki, Motoki Shimizu, Takumi Takeda, Keiichiro Nemoto, Hiromasa Saitoh, Akiko Hirabuchi, Yukie Hiraka, Naomi Miyaji, Aleksandra Białas et al. · 2024 · PLoS Pathogens
Phylogeny of the gall midges (Diptera, Cecidomyiidae, Cecidomyiinae): Systematics, evolution of feeding modes and diversification rates
Netta Dorchin, K. M. Harris, John O. Stireman · 2019 · Molecular Phylogenetics and Evolution
Genomic diversity of the human pathogen Paracoccidioides across the South American continent
Marcus de Melo Teixeira, Maria Emilia Cattana, Daniel Ricardo Matute, José F. Muñoz, Alicia Irene Arechavala, Kristin Isbell, Rafael Schipper, Gabriela Santiso, María Fernanda Tracogna, María de los Ángeles Sosa et al. · 2020 · Fungal Genetics and Biology
In the rivers: Multiple adaptive radiations of cyprinid fishes (Labeobarbus) in Ethiopian Highlands
Boris Levin, Evgeniy Simonov, Yury Yu. Dgebuadze, Marina A. Levina, Alexander S. Golubtsov · 2020 · Scientific Reports
Genome‐wide functional analysis of hot pepper immune receptors reveals an autonomous NLR clade in seed plants
Hye‐Young Lee, Hyunggon Mang, Eun-Hye Choi, Ye‐Eun Seo, Myung‐Shin Kim, Soohyun Oh, Saet‐Byul Kim, Doil Choi · 2020 · New Phytologist
Phylogenomic analyses based on genome-skimming data reveal cyto-nuclear discordance in the evolutionary history of Cotoneaster (Rosaceae)
Kaikai Meng, Sufang Chen, Ke‐Wang Xu, Renchao Zhou, Mingwan Li, Man Kumar Dhamala, Wenbo Liao, Qiang Fan · 2021 · Molecular Phylogenetics and Evolution
Pangenome of white lupin provides insights into the diversity of the species
Bárbara Hufnagel, Alexandre Soriano, Jemma L. Taylor, Fanchon Divol, Magdalena Kroc, Heather Sanders, Likawent Yeheyis, Matthew N. Nelson, Benjamin Péret · 2021 · Plant Biotechnology Journal
Monophyletic blowflies revealed by phylogenomics
Liping Yan, Thomas Pape, Karen Meusemann, Sujatha Narayanan Kutty, Rudolf Meier, Keith M. Bayless, Dong Zhang · 2021 · BMC Biology
Comparative analysis of complete Ilex (Aquifoliaceae) chloroplast genomes: insights into evolutionary dynamics and phylogenetic relationships
Ke‐Wang Xu, Chenxue Lin, Shiou Yih Lee, Lingfeng Mao, Kaikai Meng · 2022 · BMC Genomics
Impact of SARS-CoV-2 Gamma lineage introduction and COVID-19 vaccination on the epidemiological landscape of a Brazilian city
Cecília Ártico Banho, Lívia Sacchetto, Guilherme Rodrigues Fernandes Campos, Cíntia Bittar, Fábio Sossai Possebon, Leila Sabrina Ullmann, Beatriz de Carvalho Marques, Gislaine Celestino Dutra da Silva, Marília Mazzi Moraes, Maisa Carla Pereira Parra et al. · 2022 · Communications Medicine
Lifestyle Transitions in Fusarioid Fungi are Frequent and Lack Clear Genomic Signatures
Rowena Hill, Richard J. A. Buggs, Dang Toan Vu, Ester Gaya · 2022 · Molecular Biology and Evolution
Phylogenetic and ecological reevaluation of the order Onygenales
Hazal Kandemir, Karolina Dukik, Marcus de Melo Teixeira, J. Benjamin Stielow, Fatima Zohra Delma, Abdullah M. S. Al‐Hatmi, Sarah Abdalla Ahmed, Macit İlkit, Sybren de Hoog · 2022 · Fungal Diversity
Pan-mitogenomics reveals the genetic basis of cytonuclear conflicts in citrus hybridization, domestication, and diversification
Nan Wang, Chaochao Li, Lihua Kuang, Xiao‐Meng Wu, Kai‐Dong Xie, Andan Zhu, Qiang Xu, Robert M. Larkin, Yongfeng Zhou, Xiuxin Deng et al. · 2022 · Proceedings of the National Academy of Sciences
First cases of SARS-CoV-2 BA.2.86 in Denmark, 2023
Morten Rasmussen, Frederik Trier Møller, Vithiagaran Gunalan, Sharmin Baig, Marc Bennedbæk, Lasse Engbo Christiansen, Arieh Sierra Cohen, Kirsten Ellegaard, Anders Fomsgaard, Kristina Træholt Franck et al. · 2023 · Eurosurveillance
Genomic analysis reveals a cryptic pangolin species
Tong-Tong Gu, Hong Wu, Feng Yang, Philippe Gaubert, Sean Paul Heighton, Yeyizhou Fu, Ke Liu, Shu‐Jin Luo, Huarong Zhang, Jingyang Hu et al. · 2023 · Proceedings of the National Academy of Sciences
Discovery of Novel Crustacean and Cephalopod Flaviviruses: Insights into the Evolution and Circulation of Flaviviruses between Marine Invertebrate and Vertebrate Hosts
Rhys H. Parry, Sassan Asgari B · 2019 · Journal of Virology
The Genome of Caenorhabditis bovis
Lewis Stevens, Stefan Rooke, Laura Cristina Falzon, Eunice Machuka, Kelvin Momanyi, Maurice K. Murungi, Samuel M. Njoroge, Christian O. Odinga, Allan Ogendo, Joseph Ganda Ogola et al. · 2020 · Current Biology
Diversification of mammalian deltaviruses by host shifting
Laura M. Bergner, Richard J Orton, Alice Broos, Carlos Tello, Daniel J. Becker, Jorge E. Carrera, Arvind H. Patel, Roman Biek, Daniel G. Streicker · 2021 · Proceedings of the National Academy of Sciences
Parallel functional reduction in the mitochondria of apicomplexan parasites.
V. Mathur, Kevin C. Wakeman, P. Keeling · 2021 · Current Biology
Sialic Acids as Receptors for Pathogens
Patrycja Burzyńska, Łukasz F. Sobala, Krzysztof Mikołajczyk, Marlena Jodłowska, E. Jaśkiewicz · 2021 · Biomolecules
Ribosome heterogeneity in Drosophila melanogaster gonads through paralog-switching
Tayah S. Hopes, Karl Norris, Michaela Agapiou, Charley G. P. McCarthy, Philip A. Lewis, Mary J. O’Connell, Juan Fontana, Julie L. Aspden · 2021 · Nucleic Acids Research
An integrated phylogenetic reassessment of the parasitoid superfamily Platygastroidea (Hymenoptera: Proctotrupomorpha) results in a revised familial classification
Huayan Chen, Zachary J. Lahey, Elijah J. Talamas, Alejandro Valerio, Ovidiu Alin Popovici, Luciana Musetti, Hans Klompen, Andrew Polaszek, Lubomír Masner, Andrew D. Austin et al. · 2021 · Systematic Entomology
The virota and its transkingdom interactions in the healthy infant gut
Leen Beller, Ward Deboutte, Sara Vieira‐Silva, Gwen Falony, Raul Yhossef Tito, Leen Rymenans, Claude Kwe Yinda, Bert Vanmechelen, Lore Van Espen, Daan Jansen et al. · 2022 · Proceedings of the National Academy of Sciences
Cophylogeny and convergence shape holobiont evolution in sponge–microbe symbioses
M. Sabrina Pankey, David C. Plachetzki, Keir J. Macartney, Marianela Gastaldi, Marc Slattery, Deborah J. Gochfeld, Michael P. Lesser · 2022 · Nature Ecology & Evolution
Cargo Genes of Tn 7 -Like Transposons Comprise an Enormous Diversity of Defense Systems, Mobile Genetic Elements, and Antibiotic Resistance Genes
Sean Benler, Guilhem Faure, Han-Altae Tran, Sergey Shmakov, Feng Zheng, Eugene Koonin · 2021 · mBio
The coevolution of fungus-ant agriculture
Ted R. Schultz, Jeffrey Sosa‐Calvo, Matthew Kweskin, Michael W. Lloyd, Bryn T. M. Dentinger, Pepijn W. Kooij, Else C. Vellinga, Stephen A. Rehner, André Luis Rodrigues, Quimi Vidaurre Montoya et al. · 2024 · Science
Phylogenomic analyses reveal a Palaeozoic radiation and support a freshwater origin for clitellate annelids
Christer Erséus, Bronwyn W. Williams, Kevin M. Horn, Kenneth M. Halanych, Scott R. Santos, Samuel W. James, Michel Creuzé des Châtelliers, Frank E. Anderson · 2020 · Zoologica Scripta
Combined transcriptome and proteome profiling reveals specific molecular brain signatures for sex, maturation and circalunar clock phase
Schenk, Sven, Bannister, Stephanie C, Sedlazeck, Fritz J, Anrather, Dorothea, Minh, Bui Quang, Bileck, Andrea, Hartl, Markus, von Haeseler, Arndt, Gerner, Christopher, Raible, Florian et al. · 2019 · eLife
Recent Molecular Evolution of Human Metapneumovirus (HMPV): Subdivision of HMPV A2b Strains
Naganori Nao, Miwako Saikusa, Ko Sato, Tsuyoshi Sekizuka, Shuzo Usuku, Nobuko Tanaka, Hidekazu Nishimura, Makoto Takeda · 2020 · Microorganisms
Phylogenomics of Scorpions Reveal Contemporaneous Diversification of Scorpion Mammalian Predators and Mammal-Active Sodium Channel Toxins
Carlos E. Santibáñez‐López, Shlomi Aharon, Jesús A. Ballesteros, Guilherme Gainett, Caitlin M. Baker, Edmundo González‐Santillán, Mark Stephen Harvey, Mohamed Kamel Hassan, Ali Hussein Abu Almaaty, Shorouk Mohamed Aldeyarbi et al. · 2022 · Systematic Biology
Reconciling fossils with phylogenies reveals the origin and macroevolutionary processes explaining the global cycad biodiversity
Mario Coiro, Rémi Allio, Nathan Mazet, Leyla J. Seyfullah, Fabien L. Condamine · 2023 · New Phytologist
A supermatrix phylogeny of the world’s bees (Hymenoptera: Anthophila)
Patricia Henríquez‐Piskulich, Andrew F. Hugall, Devi M Stuart-Fox · 2023 · Molecular Phylogenetics and Evolution
Core genes in diverse dinoflagellate lineages include a wealth of conserved dark genes with unknown functions
Timothy G. Stephens, Mark A. Ragan, Debashish Bhattacharya, Cheong Xin Chan · 2018 · Scientific Reports
Messages From the Past: New Insights in Plant Lectin Evolution
Sofie Van Holle, Els J. M. Van Damme · 2019 · Frontiers in Plant Science
Genetic Determinants of Hydroxycinnamic Acid Metabolism in Heterofermentative Lactobacilli
Gautam Gaur, Jee‐Hwan Oh, Pasquale Filannino, Marco Gobbetti, Jan‐Peter van Pijkeren, Michael G. Gänzle · 2019 · Applied and Environmental Microbiology
Assessment of a multiplex PCR and Nanopore-based method for dengue virus sequencing in Indonesia
Samuel C. B. Stubbs, Barbara Blacklaws, Benediktus Yohan, Frilasita A. Yudhaputri, Rahma Hayati, Brian E. Schwem, Edsel Maurice T. Salvaña, Raul V. Destura, James S. Lester, Khin Saw Aye Myint et al. · 2020 · Virology Journal
Fasciclin-Like Arabinogalactan-Protein 16 (FLA16) Is Required for Stem Development in Arabidopsis
Edgar Liu, Colleen P. MacMillan, Thomas M. A. Shafee, Yingxuan Ma, Julian Ratcliffe, Allison van de Meene, Antony Bacic, John A. Humphries, Kim L. Johnson · 2020 · Frontiers in Plant Science
Light environment drives evolution of color vision genes in butterflies and moths
Yash Sondhi, Emily A. Ellis, Seth Bybee, Jamie Carroll Theobald, Akito Y. Kawahara · 2021 · Communications Biology
Chromosome-scale assembly and analysis of biomass crop Miscanthus lutarioriparius genome
Jiashun Miao, Qi Feng, Yan Li, Qiang Zhao, Cong-Cong Zhou, Heng-Yun Lu, Dan-Lin Fan, Juan Yan, Yi-Qi Lu, Qi-Lin Tian et al. · 2020 · Nature Communications
Unravelling the diversity of magnetotactic bacteria through analysis of open genomic databases
Maria Uzun, Lolita Alekseeva, Maria S. Krutkina, Veronika V. Koziaeva, Denis S. Grouzdev · 2020 · Scientific Data
Disentangling the complex gene interaction networks between rice and the blast fungus identifies a new pathogen effector
Sugihara, Yu, Abe, Yoshiko, Takagi, Hiroki, Abe, Akira, Shimizu, Motoki, Ito, Kazue, Kanzaki, Eiko, Oikawa, Kaori, Kourelis, Jiorgos, Langner, Thorsten et al. · 2023 · PLOS Biology
Diversification of methanogens into hyperalkaline serpentinizing environments through adaptations to minimize oxidant limitation
Fones, Elizabeth M, Colman, Daniel R, Kraus, Emily A, Stepanauskas, Ramunas, Templeton, Alexis S, Spear, John R, Boyd, Eric S · 2021 · The ISME Journal
Evolutionary Histories of Type III Polyketide Synthases in Fungi
Navarro-Muñoz, Jorge Carlos, Collemare, Jérôme · 2020 · Frontiers in Microbiology
Drosophila menthol sensitivity and the Precambrian origins of transient receptor potential-dependent chemosensation
Nathaniel J. Himmel, Jamin M. Letcher, Akira Sakurai, Thomas R. Gray, Maggie N. Benson, Daniel N. Cox · 2019 · Philosophical Transactions of the Royal Society B Biological Sciences
Trichoderma from Brazilian garlic and onion crop soils and description of two new species: Trichoderma azevedoi and Trichoderma peberdyi
Peter Ward Inglis, Sueli Corrêa Marques de Mello, Irene Martins, João B. T. Silva, Kamilla Macêdo, Daniel Nogoceke Sifuentes, Maria Cléria Valadares-Inglis · 2020 · PLoS ONE
Duplication of Symbiotic Lysin Motif Receptors Predates the Evolution of Nitrogen-Fixing Nodule Symbiosis
Luuk Rutten, Kana Miyata, Yuda Purwana Roswanjaya, Rik Huisman, Fengjiao Bu, Marijke Hartog, Sidney Linders, Robin van Velzen, Arjan van Zeijl, Ton Bisseling et al. · 2020 · PLANT PHYSIOLOGY
Phylogenomic Resolution of Sea Spider Diversification through Integration of Multiple Data Classes
Jesús A. Ballesteros, Emily V.W. Setton, Carlos E. Santibáñez‐López, Claudia P. Arango, Georg Brenneis, Saskia Brix, Kevin F Corbett, Esperanza Cano Sánchez, Merai Dandouch, Geoffrey F. Dilly et al. · 2020 · Molecular Biology and Evolution
Genome-Wide Reconstruction of Rediploidization Following Autopolyploidization across One Hundred Million Years of Salmonid Evolution
Manu Kumar Gundappa, Thu‐Hien To, Lars Grønvold, Samuel Martín, Sigbjørn Lien, Juergen P. Geist, David G. Hazlerigg, Simen R. Sandve, Daniel J. Macqueen · 2021 · Molecular Biology and Evolution
Ancient origin and constrained evolution of the division and cell wall gene cluster in Bacteria
D. Megrian, Najwa Taib, Alexander L. Jaffe, J. Banfield, S. Gribaldo · 2022 · Nature Microbiology
Genome-wide parallelism underlies contemporary adaptation in urban lizards
Kristin M. Winchell, Shane C. Campbell‐Staton, Jonathan B. Losos, Liam J. Revell, Brian C. Verrelli, Anthony J. Geneva · 2023 · Proceedings of the National Academy of Sciences
Phylogenomic analyses of Sapindales support new family relationships, rapid Mid-Cretaceous Hothouse diversification, and heterogeneous histories of gene duplication
Elizabeth Joyce, Marc S. Appelhans, Sven Buerki, Martin Cheek, Jurriaan M. de Vos, José Rubens Pirani, Alexandre Rizzo Zuntini, Julien B Bachelier, Michael J. Bayly, Martin W. Callmander et al. · 2023 · Frontiers in Plant Science
Near full-length HIV sequencing in multiple tissues collected postmortem reveals shared clonal expansions across distinct reservoirs during ART
Caroline Dufour, María Julia Ruiz, Amélie Pagliuzza, Corentin Richard, Aniqa Shahid, Rémi Fromentin, Rosalie Ponte, Amélie Cattin, Tomas Raul Wiche Salinas, Syim Salahuddin et al. · 2023 · Cell Reports
A wheat tandem kinase and NLR pair confers resistance to multiple fungal pathogens
Ping Lu, G. Zhang, Jing Li, Zhen Hui Gong, Gaojie Wang, Lingli Dong, Huaizhi Zhang, Guanghao Guo, Min Su, Ke Wang et al. · 2025 · Science