ModelFinder: fast model selection for accurate phylogenetic estimates

Kalyaanamoorthy, Subha, Minh, Bui Quang, Wong, Thomas K F, von Haeseler, Arndt, Jermiin, Lars S·2017·Nature Methods

DOI 10.1038/nmeth.4285

Cited by (1,026)

Items 401–500 of 1,026

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Matthieu Haudiquet, Amandine Nucci, Olaya Rendueles, Eduardo P. C. Rocha · 2021 · PLoS Biology
Family Genomoviridae: 2021 taxonomy update
Arvind Varsani, Mart Krupovìč · 2021 · Archives of Virology
A case of avian influenza A(H5N1) in England, January 2022
Isabel Oliver, Jonathan Roberts, Colin Stewart Brown, Alexander MP Byrne, Dominic Mellon, Rowena DE Hansen, Ashley C. Banyard, Joe James, Matthew Donati, Robert Porter et al. · 2022 · Eurosurveillance
Phylogenomic analyses of the Photinia complex support the recognition of a new genus Phippsiomeles and the resurrection of a redefined Stranvaesia in Maleae (Rosaceae)
Binbin Liu, Hong De‐Yuan, Shiliang Zhou, Chao Xu, Wenpan Dong, Gabriel P. Johnson, Jun Wen · 2019 · Journal of Systematics and Evolution
A diverse uncultivated microbial community is responsible for organic matter degradation in the Black Sea sulphidic zone
S. Suominen, Nina Dombrowski, J. S. Sinninghe Damsté, L. Villanueva · 2019 · Environmental Microbiology
The Enterprise , a massive transposon carrying Spok meiotic drive genes
Aaron A. Vogan, Sandra Lorena Ament‐Velásquez, Eric Bastiaans, Ola Wallerman, Sven J. Saupe, Alexander Suh, Hanna Johannesson · 2021 · Genome Research
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Hiroki Shibata, Takahito Chijiwa, Naoko Oda‐Ueda, Hitomi Nakamura, Kazuaki Yamaguchi, Shousaku Hattori, Kazumi Matsubara, Yoichi Matsuda, Akifumi Yamashita, Akiko Isomoto et al. · 2018 · Scientific Reports
Accounting for Uncertainty in the Evolutionary Timescale of Green Plants Through Clock-Partitioning and Fossil Calibration Strategies
Yuan Nie, Charles S. P. Foster, Tianqi Zhu, Ru Yao, David Alejandro Duchêne, Simon Y. W. Ho, Bojian Zhong · 2019 · Systematic Biology
Large-scale mitogenomic analysis of the phylogeography of the Late Pleistocene cave bear
Joscha Gretzinger, Martyna Molak, Ella Reiter, Saskia Pfrengle, Christian Urban, Judith Neukamm, Michel Blant, Nicholas J. Conard, Christophe Cupillard, Vesna M. Dimitrijević et al. · 2019 · Scientific Reports
Reconstructing the Complex Evolutionary History of the Papuasian Schefflera Radiation Through Herbariomics
Zhi Qiang Shee, David G. Frodin, Rodrigo Cámara‐Leret, Lisa Pokorny · 2020 · Frontiers in Plant Science
Recent advances in oomycete genomics
Jamie McGowan, David A. Fitzpatrick · 2020 · Advances in genetics
Comprehensive and Functional Analysis of Horizontal Gene Transfer Events in Diatoms
Emmelien Vancaester, Thomas Depuydt, Cristina Maria Osuna‐Cruz, Klaas Vandepoele · 2020 · Molecular Biology and Evolution
Deoxynivalenol: Toxicology, Degradation by Bacteria, and Phylogenetic Analysis
Anne Caroline Schoch Marques Pinto, Camilla Reginatto De Pierri, Alberto Gonçalves Evangelista, Ana Silvia de Lara Pires Batista Gomes, Fernando Bittencourt Luciano · 2022 · Toxins
Maternal diet modulates the infant microbiome and intestinal Flt3L necessary for dendritic cell development and immunity to respiratory infection
Md Al Amin Sikder, Ridwan Bin Rashid, Tufael Ahmed, Ismail Sebina, Daniel R. Howard, Md Ashik Ullah, Muhammed Mahfuzur Rahman, Jason P. Lynch, Bodie F. Curren, Rhiannon B. Werder et al. · 2023 · Immunity
Multi-environment ecogenomics analysis of the cosmopolitan phylum Gemmatimonadota
Izabela Mujakić, Pedro J. Cabello‐Yeves, Cristian Villena‐Alemany, Kasia Piwosz, Francisco Rodríguez‐Valera, Antonio Picazo, Antonio Camacho, Michal Koblížek · 2023 · Microbiology Spectrum
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N Yao, Zhilin Zhang, Lei Yu, Rashmi R. Hazarika, Chao Yu, Hosung Jang, Lisa M. Smith, Jurriaan Ton, Liang Liu, John J. Stachowicz et al. · 2023 · Science
RdDM-independent de novo and heterochromatin DNA methylation by plant CMT and DNMT3 orthologs
Rafael Yaari, Aviva Katz, Katherine Domb, Keith Daniel Harris, Assaf Zemach, Nir Ohad · 2019 · Nature Communications
Comparative genomics of Chlamydomonas
Rory J. Craig, Ahmed R. Hasan, R. W. Ness, P. Keightley · 2020 · bioRxiv
The importance of molecular characters when morphological variability hinders diagnosability: systematics of the moon jellyfish genus <i>Aurelia</i> (Cnidaria: Scyphozoa)
Lawley, Jonathan W., Gamero-Mora, Edgar, Maronna, Maximiliano M., Chiaverano, Luciano M., Stampar, Sérgio N., Hopcroft, Russell R., Collins, Allen G., Morandini, André C. · 2021 · PeerJ
Global Distribution and Evolution of Mycobacterium bovis Lineages
Cristina Kraemer Zimpel, José Salvatore Leister Patané, Aureliano Coelho Proença Guedes, Robson Francisco de Souza, Taiana Tainá Silva‐Pereira, Naila Camargo, Antônio Francisco de Souza Filho, Cássia Yumi Ikuta, José Soares Ferreira Neto, João Carlos Setúbal et al. · 2020 · Frontiers in Microbiology
Plastid genomics of Nicotiana (Solanaceae): insights into molecular evolution, positive selection and the origin of the maternal genome of Aztec tobacco ( Nicotiana rustica )
Furrukh Mehmood, Abdullah Abdullah, Zartasha Ubaid, Iram Shahzadi, Ibrar Ahmed, Mohammad Tahir Waheed, Péter Poczai, Bushra Mirza · 2020 · PeerJ
Can plastid genome sequencing be used for species identification in Lauraceae?
Zhi‐Fang Liu, Hui Ma, Xiuqin Ci, Lang Li, Yu Song, Bing Liu, Hsi-Wen Li, Shu-Li Wang, Xiao‐Jian Qu, Jianlin Hu et al. · 2021 · Botanical Journal of the Linnean Society
Gene Flow Increases Phylogenetic Structure and Inflates Cryptic Species Estimations: A Case Study on Widespread Philippine Puddle Frogs ( Occidozyga laevis )
Kin Onn Chan, Carl R. Hutter, Perry L. Wood, Yong‐Chao Su, Rafe M. Brown · 2021 · Systematic Biology
Cultivation and visualization of a methanogen of the phylum Thermoproteota
Anthony J. Kohtz, Nikolai Petrosian, Viola Krukenberg, Zackary J. Jay, Martin Pilhofer, Roland Hatzenpichler · 2024 · Nature
Viroid-like colonists of human microbiomes
Zheludev, Ivan N., Edgar, Robert C., Lopez-Galiano, Maria Jose, de la Peña, Marcos, Babaian, Artem, Bhatt, Ami S., Fire, Andrew Z. · 2024 · Cell
The All-Rounder Sodalis: A New Bacteriome-Associated Endosymbiont of the Lygaeoid Bug Henestaris halophilus (Heteroptera: Henestarinae) and a Critical Examination of Its Evolution
Diego Santos-García, Francisco J. Silva, Shai Morin, Konrad Dettner, Stefan Martin Kuechler · 2017 · Genome Biology and Evolution
The Mycobacterial Cell Envelope: A Relict From the Past or the Result of Recent Evolution?
Antony T. Vincent, Sammy Nyongesa, Isabelle Morneau, Michael B. Reed, Elitza I. Tocheva, Frédéric J. Veyrier · 2018 · Frontiers in Microbiology
To B or Not to B: Comparative Genomics Suggests Arsenophonus as a Source of B Vitamins in Whiteflies
Diego Santos-García, Ksenia Juravel, Shiri Freilich, Einat Zchori‐Fein, Amparo Latorre, Andrés Moyá, Shai Morin, Francisco J. Silva · 2018 · Frontiers in Microbiology
A novel SARS-CoV-2 related coronavirus in bats from Cambodia
Vibol Hul, Déborah Delaune, Erik A. Karlsson, Alexandre Hassanin, Tey Putita Ou, Artem Baidaliuk, Fabiana Gámbaro, Vương Tân Tú, Lucy Keatts, Jonna A. K. Mazet et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
Viroid-like colonists of human microbiomes
Zheludev, Ivan N., Edgar, Robert C., Lopez-Galiano, Maria Jose, de la Peña, Marcos, Babaian, Artem, Bhatt, Ami S., Fire, Andrew Z. · 2024
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Eugeniya I. Bekker, Карабанов Дмитрий Павлович, Yan R. Galimov, Christoph R. Haag, Tatiana V. Neretina, Alexey A. Kotov · 2018 · PLoS ONE
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Arati P. Vasav, Vitthal Tanaji Barvkar · 2019 · BMC Genomics
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Hao Chung The, Christine J. Boinett, Duy Pham Thanh, Claire Jenkins, François‐Xavier Weill, Benjamin P. Howden, Mary Valcanis, Niall De Lappe, Martin Cormican, Sonam Wangchuk et al. · 2019 · Nature Communications
Origin and Evolution of Polycyclic Triterpene Synthesis
Carlos Santana‐Molina, Elena Rivas‐Marín, Ana Maria Rojas, Damien Paul Devos · 2020 · Molecular Biology and Evolution
The genetic factors of bilaterian evolution
Peter Heger, Wen Li Zheng, Anna Rottmann, Kristen A. Panfilio, Thomas Wiehe · 2020 · eLife
Long‐read sequencing reveals widespread intragenic structural variants in a recent allopolyploid crop plant
Harmeet Singh Chawla, HueyTyng Lee, Iulian Gabur, Paul Vollrath, Suriya Tamilselvan‐Nattar‐Amutha, Christian Obermeier, Sarah Schießl, Jia‐Ming Song, Kede Liu, Liang Guo et al. · 2020 · Plant Biotechnology Journal
Toward a Stable Global Noctuidae (Lepidoptera) Taxonomy
Kevin L. Keegan, Jadranka Rota, Reza Zahiri, Alberto Zilli, Niklas Wahlberg, Christian Schmidt, J. Donald Lafontaine, Paul Z. Goldstein, David L. Wagner · 2021 · Insect Systematics and Diversity
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Fabai Wu, Daan R. Speth, Alon Philosof, Antoine Crémière, Aditi K. Narayanan, Roman A. Barco, Stephanie A. Connon, Jan P. Amend, Igor A. Antoshechkin, Victoria J. Orphan · 2022 · Nature Microbiology
Phylogenomic Analysis of the Parrots of the World Distinguishes Artifactual from Biological Sources of Gene Tree Discordance
Brian Tilston Smith, Jon T. Merwin, Kaiya L. Provost, Gregory Thom, Robb Thomas Brumfield, Mateus Ferreira, William M. Mauck, Robert G. Moyle, Timothy F. Wright, Leo Joseph · 2022 · Systematic Biology
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A. Vacca Smith, Edwin R. Moorhouse, James Monaghan, Clare M. Taylor, Ian Singleton · 2018 · Journal of Applied Microbiology
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Zhang, Dengwei, Zhang, Jian, Kalimuthu, Shanthini, Liu, Jing, Song, Zhi-Man, He, Bei-bei, Cai, Peiyan, Zhong, Zheng, Feng, Chenchen, Neelakantan, Prasanna et al. · 2023 · Microbiome
New patellogastropod mitogenomes help counteracting long-branch attraction in the deep phylogeny of gastropod mollusks
Juan E. Uribe, Iker Irisarri, José Templado, Rafael Zardoya · 2018 · Molecular Phylogenetics and Evolution
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Kelsey R. Moore, Cara Magnabosco, Lily Momper, David A. Gold, Tanja Bosak, Gregory P. Fournier · 2019 · Frontiers in Microbiology
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Ryutaro Furukawa, Wakako Toma, Koji Yamazaki, Satoshi Akanuma · 2020 · Scientific Reports
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Jiyun Li, Zheng‐Shuang Hua, Tao Liu, Chengwen Wang, Jie Li, Ge Bai, Sebastian Lücker, Mike S. M. Jetten, Min Zheng, Jianhua Guo · 2021 · ISME Communications
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