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Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations
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Mass spectrometry-based proteomics
Aebersold, R., & Mann, M. (2003) · Nature · doi:10.1038/nature01511 · Cited by 6,955
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Elias, J. E., & Gygi, S. P. (2007) · Nature Methods · doi:10.1038/nmeth1019 · Cited by 3,925
Self-citationMolecular anatomy of a trafficking organelle
Takamori, S., Holt, M., Stenius, K., Lemke, E. A., Grønborg, M., Riedel, D., Urlaub, H., Schenck, S., Brügger, B., Ringler, P., et al. (2006) · Cell · doi:10.1016/j.cell.2006.10.030 · Cited by 2,373
Beausoleil, S. A., Villén, J., Gerber, S. A., Rush, J., & Gygi, S. P. (2006) · Nature Biotechnology · doi:10.1038/nbt1240 · Cited by 1,577
Self-citationProtein Analysis by Shotgun/Bottom-up Proteomics
Zhang, Y., Fonslow, B. R., Shan, B., Baek, M.-C., & Yates, J. R. (2013) · Chemical Reviews · doi:10.1021/cr3003533 · Cited by 1,491
Large-scale phosphorylation analysis of mouse liver
Villén, J., Beausoleil, S. A., Gerber, S. A., & Gygi, S. P. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0609836104 · Cited by 730
Self-citationTarget-Decoy Search Strategy for Mass Spectrometry-Based Proteomics
Elias, J. E., & Gygi, S. P. (2010) · Methods in Molecular Biology · doi:10.1007/978-1-60761-444-9_5 · Cited by 644
Self-citationTabb, D. L., Vega-Montoto, L., Rudnick, P. A., Variyath, A. M., Ham, A.-J. L., Bunk, D. M., Kilpatrick, L. E., Billheimer, D. D., Blackman, R. K., Cardasis, H. L., et al. (2010) · Journal of Proteome Research · doi:10.1021/pr9006365 · Cited by 551
Lam, H., Deutsch, E. W., Eddes, J. S., Eng, J. K., King, N., Stein, S. E., & Aebersold, R. (2007) · PROTEOMICS · doi:10.1002/pmic.200600625 · Cited by 517
Paoletti, A. C., Parmely, T. J., Tomomori-Sato, C., Sato, S., Zhu, D., Conaway, R. C., Conaway, J. W., Florens, L., & Washburn, M. P. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0606379103 · Cited by 538
Chertova, E., Chertov, O., Coren, L. V., Roser, J. D., Trubey, C. M., Bess, J. W., Sowder, R. C., Barsov, E., Hood, B. L., Fisher, R. J., et al. (2006) · Journal of Virology · doi:10.1128/jvi.01013-06 · Cited by 462
Proteome-derived, database-searchable peptide libraries for identifying protease cleavage sites
Schilling, O., & Overall, C. M. (2008) · Nature Biotechnology · doi:10.1038/nbt1408 · Cited by 401
Depletion of Abundant Plasma Proteins and Limitations of Plasma Proteomics
Tu, C., Rudnick, P. A., Martinez, M. Y., Cheek, K. L., Stein, S. E., Slebos, R. J. C., & Liebler, D. C. (2010) · Journal of Proteome Research · doi:10.1021/pr100646w · Cited by 390
Mills, R. H., Dulai, P. S., Vázquez-Baeza, Y., Sauceda, C., Daniel, N., Gerner, R. R., Batachari, L. E., Malfavon, M., Zhu, Q., Weldon, K., et al. (2022) · Nature Microbiology · doi:10.1038/s41564-021-01050-3 · Cited by 385
A HUPO test sample study reveals common problems in mass spectrometry–based proteomics
HUPO Test Sample Working Group, Bell, A. W., Deutsch, E. W., Au, C. E., Kearney, R. E., Beavis, R., Sechi, S., Nilsson, T., & Bergeron, J. J. M. (2009) · Nature Methods · doi:10.1038/nmeth.1333 · Cited by 351
Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system
de Godoy, L. M., Olsen, J. V., de Souza, G. A., Li, G., Mortensen, P., & Mann, M. (2006) · Genome Biology · doi:10.1186/gb-2006-7-6-r50 · Cited by 276
Mass Spectrometric Characterization of the Affinity-Purified Human 26S Proteasome Complex
Wang, X., Chen, C.-F., Baker, P. R., Chen, P.-L., Kaiser, P., & Huang, L. (2007) · Biochemistry · doi:10.1021/bi061994u · Cited by 260
Essential metabolism for a minimal cell
Breuer, M., Earnest, E. E., Merryman, C., Wise, K. S., Sun, L., Lynott, M. R., Hutchison, C. A., Smith, H. O., Lapek, J. D., Gonzalez, D. J., et al. (2019) · eLife · doi:10.7554/elife.36842 · Cited by 190
“The database was appended to include a decoy database comprised of all protein sequences in reversed order for downstream false discovery estimation (Peng et al., 2003; Elias et al., 2005; Elias and Gygi, 2007).”
MethodRudnick, P. A., Clauser, K. R., Kilpatrick, L. E., Tchekhovskoi, D. V., Neta, P., Blonder, N., Billheimer, D. D., Blackman, R. K., Bunk, D. M., Cardasis, H. L., et al. (2010) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m900223-mcp200 · Cited by 183
Fournier, M. L., Paulson, A., Pavelka, N., Mosley, A. L., Gaudenz, K., Bradford, W. D., Glynn, E., Li, H., Sardiu, M. E., Fleharty, B., et al. (2010) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m900415-mcp200 · Cited by 161
Mastroleo, F., Van Houdt, R., Leroy, B., Benotmane, M. A., Janssen, A., Mergeay, M., Vanhavere, F., Hendrickx, L., Wattiez, R., & Leys, N. (2009) · The ISME Journal · doi:10.1038/ismej.2009.74 · Cited by 68
EGFR is required for Wnt9a/Fzd9b signalling specificity in haematopoietic stem cells
Grainger, S., Nguyen, N., Richter, J., Setayesh, J., Lonquich, B., Oon, C. H., Wozniak, J. M., Barahona, R., Kamei, C. N., Houston, J., et al. (2019) · Nature Cell Biology · doi:10.1038/s41556-019-0330-5 · Cited by 60
Metadata
- Authors
- Elias, J. E., Haas, W., Faherty, B. K., & Gygi, S. P.
- Venue
- Nature Methods
- Published
- 2005-08-23
- Volume
- 2
- Issue
- 9
- Pages
- 667-675
- ISSN
- 1548-7091 (ISSN-L)
- 1548-7105
- OpenAlex
- W2123886946
- Cited by
- 701
- References
- 1
- FWCI
- 30.79
- Type
- journal article
- Language
- en
- Open access
- closed
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