Rett syndrome mutations abolish the interaction of MeCP2 with the NCoR/SMRT co-repressor
Open accessAbstract
Rett syndrome (RTT) is a severe neurological disorder that is caused by mutations in the MECP2 gene. Many missense mutations causing RTT are clustered in the DNA-binding domain of MeCP2, suggesting that association with chromatin is critical for its function. We identified a second mutational cluster in a previously uncharacterized region of MeCP2. We found that RTT mutations in this region abolished the interaction between MeCP2 and the NCoR/SMRT co-repressor complexes. Mice bearing a common missense RTT mutation in this domain exhibited severe RTT-like phenotypes. Our data are compatible with the hypothesis that brain dysfunction in RTT is caused by a loss of the MeCP2 'bridge' between the NCoR/SMRT co-repressors and chromatin.
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MeCP2 represses transcription in a gene-specific manner, interacting with the co-repressor complexes mSIN3A and NCoR1/SMRT.
“Consistently, MeCP2 represses transcription in a gene-specific manner, interacting with the co-repressor complexes mSIN3A and NCoR1/SMRT [70,76].”
From Rett syndrome: a neurological disorder with metabolic components (2018) · cites this paper as [70]
The Results (page unavailable) confirm MeCP2’s interactions with both SIN3A and NCoR/SMRT and show repression of a reporter gene. The Discussion (page unavailable) describes silencing of specific genes as a possibility, alongside global inhibition of transcriptional noise; it does not establish gene-specific repression as a general fact. (LLM, conf=0.88)
Experimental — accuracy not yet measuredThe interaction between MeCP2 and the NCoR1/SMRT complex is facilitated by the NCoR1/SMRT interaction domain located at MeCP2 amino acids 285-309.
“Furthermore, this group found that the interaction between MeCP2 and the NCoR1/SMRT complex was facilitated by the NCoR1/SMRT interaction domain (NID) located at MeCP2 amino acids 285–309 [70,71].”
From Rett syndrome: a neurological disorder with metabolic components (2018) · cites this paper as [70]
The Results identify a MeCP2 NCoR/SMRT interaction domain and report that residues 269–309 were necessary for binding in deletion experiments. They also report direct binding by a peptide spanning residues 285–319. The claimed boundary of 285–309 is not established by either result. (LLM, conf=0.87)
Experimental — accuracy not yet measuredSuch MECP2 missense mutations recapitulate Rett Syndrome phenotypes in mice.
“Such mutations recapitulate Rett Syndrome phenotypes in mice”
From A suppressor screen in Mecp2 mutant mice implicates cholesterol metabolism in Rett syndrome (2013) · cites this paper as [53]
The Results and Discussion report that mice bearing the MeCP2 R306C missense mutation developed severe Rett-like phenotypes. The paper establishes this for R306C, but the claim’s plural wording extends the finding to MECP2 missense mutations more generally. (LLM, conf=0.85)
Experimental — accuracy not yet measuredMeCP2 serves as a bridge between methylated DNA and the NCoR1/SMRT co-repressor complex, anchoring the complex to DNA via its NID and MBD.
“These findings have led to a model wherein MeCP2 serves as a bridge between methylated DNA and the corepressor complex, anchoring the NCoR1/SMRT complex to DNA via its NID and MBD, respectively.”
From Rett syndrome: a neurological disorder with metabolic components (2018) · cites this paper as [70]
Five of the seven MeCP2 protein interactors identified were subunits of the NCoR1/SMRT co-repressor complex.
“Remarkably, five of the seven MeCP2 protein interactors identified were subunits of the NCoR1/SMRT co-repressor complex [70].”
From Rett syndrome: a neurological disorder with metabolic components (2018) · cites this paper as [70]
Interruption of the MeCP2-NCoR1/SMRT complex interaction alone is capable of causing RTT-like phenotypes.
“This suggests that the interruption of the MeCP2-NCoR1/SMRT complex interaction alone is capable of causing RTT-like phenotypes.”
From Rett syndrome: a neurological disorder with metabolic components (2018) · cites this paper as [70]
A subset of MECP2 missense mutations abolish interactions with a transcriptional co-repressor complex containing HDAC3, NCoR1, SMRT, and TBLR1.
“A subset of MECP2 missense mutations abolish interactions with a transcriptional co-repressor complex containing HDAC3, NCoR1, SMRT, and TBLR1.”
From A suppressor screen in Mecp2 mutant mice implicates cholesterol metabolism in Rett syndrome (2013) · cites this paper as [53]
RTT dysfunction is caused by a failure of MECP2 to anchor the HDAC3/NCoR/SMRT complex to chromatin.
“suggest for the first time that RTT dysfunction is caused by a failure of MECP2 to anchor the HDAC3/NCoR/SMRT complex to chromatin53,54.”
From A suppressor screen in Mecp2 mutant mice implicates cholesterol metabolism in Rett syndrome (2013) · cites this paper as [53]
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Cites
MeCP2, a Key Contributor to Neurological Disease, Activates and Represses Transcription
Chahrour, M., Jung, S. Y., Shaw, C., Zhou, X., Wong, S. T. C., Qin, J., & Zoghbi, H. Y. (2008) · Science · doi:10.1126/science.1153252 · Cited by 1,823 · see citing works
Deficiency of methyl-CpG binding protein-2 in CNS neurons results in a Rett-like phenotype in mice
Chen, R. Z., Akbarian, S., Tudor, M., & Jaenisch, R. (2001) · Nature Genetics · doi:10.1038/85906 · Cited by 1,275 · see citing works
Activity-dependent phosphorylation of MeCP2 threonine 308 regulates interaction with NCoR
Ebert, D. H., Gabel, H. W., Robinson, N. D., Kastan, N. R., Hu, L. S., Cohen, S., Navarro, A. J., Lyst, M. J., Ekiert, R., Bird, A. P., et al. (2013) · Nature · doi:10.1038/nature12348 · Cited by 227 · see citing works
Self-citation
Flagged first, then by citations
Research works printed but not linked: 35
- [1]Amir RE Rett syndrome is caused by mutations in X-linked MECP2, encoding methyl-CpG–binding protein 2 Nat. Genet 1999 23 185 188 10508514
- [2]Nan X Transcriptional repression by the methyl-CpG–binding protein MeCP2 involves a histone deacetylase complex Nature 1998 393 386 389 9620804
- [3]Lewis JD Purification, sequence and cellular localization of a novel chromosomal protein that binds to methylated DNA Cell 1992 69 905 914 1606614
- [4]Kudo S Heterogeneity in residual function of MeCP2 carrying missense mutations in the methyl CpG binding domain J. Med. Genet 2003 40 487 493 12843318 PMC1735522
- [6]Guy J Cheval H Selfridge J Bird A The role of MeCP2 in the brain Annu. Rev. Cell Dev. Biol 2011 27 631 652 21721946
- [7]Yusufzai TM Wolffe AP Functional consequences of Rett syndrome mutations on human MeCP2 Nucleic Acids Res 2000 28 4172 4179 11058114 PMC113135
- [8]Nan X Campoy J Bird A MeCP2 is a transcriptional repressor with abundant binding sites in genomic chromatin Cell 1997 88 471 481 9038338
- [9]Watson PJ Fairall L Schwabe JW Nuclear hormone receptor co-repressors: structure and function Mol. Cell Endocrinol 2012 348 440 449 21925568 PMC3315023
- [10]Kokura K The Ski protein family is required for MeCP2-mediated transcriptional repression J. Biol. Chem 2001 276 34115 34121 11441023
- [11]Stancheva I Collins AL Van den Veyver IB Zoghbi H Meehan RR A mutant form of MeCP2 protein associated with human Rett syndrome cannot be displaced from methylated DNA by notch in Xenopus embryos Mol. Cell 2003 12 425 435 14536082
- [12]Guy J Hendrich B Holmes M Martin JE Bird A A mouse Mecp2-null mutation causes neurological symptoms that mimic Rett syndrome Nat. Genet 2001 27 322 326 11242117
- [13]Guy J Gan J Selfridge J Cobb S Bird A Reversal of neurological defects in a mouse model of Rett syndrome Science 2007 315 1143 1147 17289941 PMC7610836
- [15]Shahbazian M Mice with truncated MeCP2 recapitulate many Rett syndrome features and display hyperacetylation of histone H3 Neuron 2002 35 243 254 12160743
- [16]Schanen C Phenotypic manifestations of MECP2 mutations in classical and atypical Rett syndrome Am. J. Med. Genet. A 2004 126A 129 140 15057977
- [17]Skene PJ Neuronal MeCP2 is expressed at near histone-octamer levels and globally alters the chromatin state Mol. Cell 2010 37 457 468 20188665 PMC4338610
- [18]Cooper DN Krawczak M The mutational specturm of single base-pair substitutions causing human genetic disease: patterns and predictions Hum. Genet 1990 85 55 74 2192981
- [19]Fyfe S Cream A de Klerk N Christodoulou J Leonard H InterRett and RettBASE: International Rett Syndrome Association databases for Rett syndrome J. Child Neurol 2003 18 709 713 14649554
- [20]Goffin D Rett syndrome mutation MeCP2 T158A disrupts DNA binding, protein stability and ERP responses Nat. Neurosci 2012 15 274 283 22119903 PMC3267879
- [21]Young JI Regulation of RNA splicing by the methylation-dependent transcriptional repressor methyl-CpG binding protein 2 Proc. Natl. Acad. Sci. USA 2005 102 17551 17558 16251272 PMC1266160
- [22]Horike S Cai S Miyano M Cheng JF Kohwi-Shigematsu T Loss of silent-chromatin looping and impaired imprinting of DLX5 in Rett syndrome Nat. Genet 2005 37 31 40 15608638
- [23]Agarwal N MeCP2 Rett mutations affect large scale chromatin organization Hum. Mol. Genet 2011 20 4187 4195 21831886
- [24]Ricciardi S Reduced AKT/mTOR signaling and protein synthesis dysregulation in a Rett syndrome animal model Hum. Mol. Genet 2011 20 1182 1196 21212100
- [25]Muotri AR L1 retrotransposition in neurons is modulated by MeCP2 Nature 2010 468 443 446 21085180 PMC3059197
- [26]Zhou Z Brain-specific phosphorylation of MeCP2 regulates activity-dependent Bdnf transcription, dendritic growth and spine maturation Neuron 2006 52 255 269 17046689 PMC3962021
- [28]Christodoulou J Grimm A Maher T Bennetts B RettBASE: The IRSA MECP2 variation database: a new mutation database in evolution Hum. Mutat 2003 21 466 472 12673788
- [29]Schmiedeberg L Skene P Deaton A Bird A A temporal threshold for formaldehyde crosslinking and fixation PLoS ONE 2009 4 e4636 19247482 PMC2645674
- [30]Klose RJ Bird AP MeCP2 behaves as an elongated monomer that does not stably associate with the Sin3a chromatin remodelling complex J. Biol. Chem 2004 279 46490 46496 15322089
- [31]Rothbauer U A versatile nanotrap for biochemical and functional studies with fluorescent fusion proteins Mol. Cell Proteomics 2008 7 282 289 17951627
- [32]Jiang Y Matevossian A Huang HS Straubhaar J Akbarian S Isolation of neuronal chromatin from brain tissue BMC Neurosci 2008 9 42 18442397 PMC2377267
- [33]Dragatsis I Zeitlin S A method for the generation of conditional gene repair mutations in mice Nucleic Acids Res 2001 29 E10 11160912 PMC30411
- [34]Araki K Araki M Miyazaki J Vassalli P Site-specific recombination of a transgene in fertilized eggs by transient expression of Cre recombinase Proc. Natl. Acad. Sci. USA 1995 92 160 164 7816809 PMC42837
- [35]Cohen S Genome-wide activity-dependent MeCP2 phosphorylation regulates nervous system development and function Neuron 2011 72 72 85 21982370 PMC3226708
- [36]Bain G Kitchens D Yao M Huettner JE Gottlieb DI Embryonic stem cells express neuronal properties in vitro Dev. Biol 1995 168 342 357 7729574
- [37]Li M Pevny L Lovell-Badge R Smith A Generation of purified neural precursors from embryonic stem cells by lineage selection Curr. Biol 1998 8 971 974 9742400
- [38]Drewell RA Goddard CJ Thomas JO Surani MA Methylation-dependent silencing at the H19 imprinting control region by MeCP2 Nucleic Acids Res 2002 30 1139 1144 11861904 PMC101245
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Self-citation
- Authors
- Lyst, M. J., Ekiert, R., Ebert, D. H., Merusi, C., Nowak, J., Selfridge, J., Guy, J., Kastan, N. R., Robinson, N. D., de Lima Alves, F., Rappsilber, J., Greenberg, M. E., & Bird, A.
- Affiliations
- Wellcome Centre for Cell Biology (GB)
- Harvard University (US)
- Corresponding author
- Bird, Adrian
- ORCID
- Venue
- Nature Neuroscience
- Published
- 2013-06-16
- Volume
- 16
- Issue
- 7
- Pages
- 898-902
- ISSN
- 1097-6256 (ISSN-L)
- 1546-1726
- PMC
- PMC3786392
- OpenAlex
- W2122522583
- Cited by
- 410
- References
- 3
- Citations by year
- 2026: 25 · 2025: 27 · 2024: 33 · 2023: 27 · 2022: 23 · 2021: 38 · 2020: 30 · 2019: 36 · 2018: 35 · 2017: 32 · 2016: 34 · 2015: 26 · 2014: 28 · 2013: 16
- FWCI
- 23.00
- Type
- journal article
- Language
- en
- Open access
- green
- europepmc.org
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature Neuroscience (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Funders
- Wellcome Trust (091020, 084229, 092076, 091580)
- National Institutes of Health (5r01ns048276-15)
- National Institute of Mental Health (K08MH090306, K08MH90306)
- National Institute of Neurological Disorders and Stroke (R01-NS-048276)
- Eunice Kennedy Shriver National Institute of Child Health and Human Development (P30HD018655, P30HD-18655)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetics and Neurodevelopmental Disorders
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genomics and Rare Diseases
- Keywords
- Rett syndrome, MeCP2, protein-protein interaction, missense mutations, C-terminal domain, transcriptional repression, knock-in mice, motor phenotype, chromatin, DNA-binding domain
- MeSH terms
- Histone Deacetylase 3, Animals, Brain, Cells, Cultured, Disease Models, Animal, Exploratory Behavior, Histone Deacetylases, Mice, Inbred C57BL, Mice, Transgenic, Models, Molecular, Mutation, Rett Syndrome, Immunoprecipitation, Green Fluorescent Proteins, Mice, Methyl-CpG-Binding Protein 2, Nuclear Receptor Co-Repressor 1, Nuclear Receptor Co-Repressor 2
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