Sequential regulatory loops as key gatekeepers for neuronal reprogramming in human cells
Open accessAbstract
Direct conversion of somatic cells into neurons holds great promise for regenerative medicine. However, neuronal conversion is relatively inefficient in human cells compared to mouse cells. It has been unclear what might be the key barriers to reprogramming in human cells. We recently elucidated an RNA program mediated by the polypyrimidine tract binding protein PTB to convert mouse embryonic fibroblasts (MEFs) into functional neurons. In human adult fibroblasts (HAFs), however, we unexpectedly found that invoking the documented PTB-REST-miR-124 loop generates only immature neurons. We now report that the functionality requires sequential inactivation of PTB and the PTB paralog nPTB in HAFs. Inactivation of nPTB triggers another self-enforcing loop essential for neuronal maturation, which comprises nPTB, the transcription factor BRN2, and miR-9. These findings suggest that two separate gatekeepers control neuronal conversion and maturation and consecutively overcoming these gatekeepers enables deterministic reprogramming of HAFs into functional neurons.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
PTBP1 depletion has also been linked to broader neurogenic regulatory circuits, including the miR-124/REST pathway involved in neuronal induction and the PTBP2/miR-9/BRN2 axis implicated in neuronal maturation.
“PTBP1 depletion has also been linked to broader neurogenic regulatory circuits, including the miR-124/REST pathway involved in neuronal induction and the PTBP2/miR-9/BRN2 axis implicated in neuronal maturation.”
From Reverse the progression of Alzheimer’s disease through Nano-ERASER-based adult neuroregeneration (2026) · cites this paper as [26]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Highly efficient neural conversion of human ES and iPS cells by dual inhibition of SMAD signaling
Chambers, S. M., Fasano, C. A., Papapetrou, E. P., Tomishima, M., Sadelain, M., & Studer, L. (2009) · Nature Biotechnology · doi:10.1038/nbt.1529 · Cited by 3,620 · see citing works
Direct conversion of fibroblasts to functional neurons by defined factors
Vierbuchen, T., Ostermeier, A., Pang, Z. P., Kokubu, Y., Südhof, T. C., & Wernig, M. (2010) · Nature · doi:10.1038/nature08797 · Cited by 3,017 · see citing works
Self-citationThe human brain in numbers: a linearly scaled-up primate brain
Herculano-Houzel, S. (2009) · Frontiers in Human Neuroscience · doi:10.3389/neuro.09.031.2009 · Cited by 1,778 · see citing works
A microRNA array reveals extensive regulation of microRNAs during brain development
KRICHEVSKY, A. M., KING, K. S., DONAHUE, C. P., KHRAPKO, K., & KOSIK, K. S. (2003) · RNA · doi:10.1261/rna.5980303 · Cited by 1,040 · see citing works
Human-specific gene <i>ARHGAP11B</i> promotes basal progenitor amplification and neocortex expansion
Florio, M., Albert, M., Taverna, E., Namba, T., Brandl, H., Lewitus, E., Haffner, C., Sykes, A., Wong, F. K., Peters, J., et al. (2015) · Science · doi:10.1126/science.aaa1975 · Cited by 632 · see citing works
Direct Conversion of Fibroblasts to Neurons by Reprogramming PTB-Regulated MicroRNA Circuits
Xue, Y., Ouyang, K., Huang, J., Zhou, Y., Ouyang, H., Li, H., Wang, G., Wu, Q., Wei, C., Bi, Y., et al. (2013) · Cell · doi:10.1016/j.cell.2012.11.045 · Cited by 562 · see citing works
Self-citationXue, Y., Zhou, Y., Wu, T., Zhu, T., Ji, X., Kwon, Y.-S., Zhang, C., Yeo, G., Black, D. L., Sun, H., et al. (2009) · Molecular Cell · doi:10.1016/j.molcel.2009.12.003 · Cited by 469 · see citing works
Self-citationSpatial and temporal specification of neural fates by transcription factor codes
Guillemot, F. (2007) · Development · doi:10.1242/dev.006379 · Cited by 308 · see citing works
PSD-95 is post-transcriptionally repressed during early neural development by PTBP1 and PTBP2
Zheng, S., Gray, E. E., Chawla, G., Porse, B. T., O'Dell, T. J., & Black, D. L. (2012) · Nature Neuroscience · doi:10.1038/nn.3026 · Cited by 254 · see citing works
MicroRNA-124 is a subventricular zone neuronal fate determinant
Akerblom, M., Sachdeva, R., Barde, I., Verp, S., Gentner, B., Trono, D., & Jakobsson, J. (2012) · Journal of Neuroscience · doi:10.1523/jneurosci.0558-12.2012 · Cited by 207 · see citing works
Flagged first, then by citations
Research works printed but not linked: 44
- [1]Hobert O Regulation of terminal differentiation programs in the nervous system Annu Rev Cell Dev Biol 2011 27 681 696 21985672
- [2]Molyneaux BJ Arlotta P Menezes JR Macklis JD Neuronal subtype specification in the cerebral cortex Nat Rev Neurosci 2007 8 427 437 17514196
- [4]Bang AG Goulding MD Regulation of vertebrate neural cell fate by transcription factors Current opinion in neurobiology 1996 6 25 32 8794048
- [7]Lepski G Delayed functional maturation of human neuronal progenitor cells in vitro Molecular and cellular neurosciences 2011 47 36 44 21362477
- [8]Takahashi K Induction of pluripotent stem cells from adult human fibroblasts by defined factors Cell 2007 131 861 872 18035408
- [9]Takahashi K Yamanaka S Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors Cell 2006 126 663 676 16904174
- [10]Yu J Induced pluripotent stem cell lines derived from human somatic cells Science 2007 318 1917 1920 18029452
- [11]Dimos JT Induced pluripotent stem cells generated from patients with ALS can be differentiated into motor neurons Science 2008 321 1218 1221 18669821
- [12]Wernig M Neurons derived from reprogrammed fibroblasts functionally integrate into the fetal brain and improve symptoms of rats with Parkinson’s disease Proc Natl Acad Sci U S A 2008 105 5856 5861 18391196 PMC2311361
- [13]Caiazzo M Direct generation of functional dopaminergic neurons from mouse and human fibroblasts Nature 2011 476 224 227 21725324
- [14]Pang ZP Induction of human neuronal cells by defined transcription factors Nature 2011 476 220 223 21617644 PMC3159048
- [15]Pfisterer U Direct conversion of human fibroblasts to dopaminergic neurons Proc Natl Acad Sci U S A 2011 108 10343 10348 21646515 PMC3121829
- [16]Son EY Conversion of mouse and human fibroblasts into functional spinal motor neurons Cell Stem Cell 2011 9 205 218 21852222 PMC3188987
- [18]Broccoli V Caiazzo M Dell’Anno MT Setting a highway for converting skin into neurons Journal of molecular cell biology 2011 3 322 323 22021656
- [19]Amamoto R Arlotta P Development-inspired reprogramming of the mammalian central nervous system Science 2014 343 1239882 24482482 PMC4122114
- [20]Cahan P CellNet: network biology applied to stem cell engineering Cell 2014 158 903 915 25126793 PMC4233680
- [21]Morris SA Dissecting engineered cell types and enhancing cell fate conversion via CellNet Cell 2014 158 889 902 25126792 PMC4291075
- [22]Hou P Pluripotent stem cells induced from mouse somatic cells by small-molecule compounds Science 2013 341 651 654 23868920
- [23]Li Y Generation of iPSCs from mouse fibroblasts with a single gene, Oct4, and small molecules Cell Res 2011 21 196 204 20956998 PMC3193405
- [24]Cimadamore F Amador-Arjona A Chen C Huang CT Terskikh AV SOX2-LIN28/let-7 pathway regulates proliferation and neurogenesis in neural precursors Proc Natl Acad Sci U S A 2013 110 E3017 E3026 23884650 PMC3740872
- [25]Li X Jin P Roles of small regulatory RNAs in determining neuronal identity Nat Rev Neurosci 2010 11 329 338 20354535
- [26]Ambasudhan R Direct reprogramming of adult human fibroblasts to functional neurons under defined conditions Cell Stem Cell 2011 9 113 118 21802386 PMC4567246
- [27]Yoo AS MicroRNA-mediated conversion of human fibroblasts to neurons Nature 2011 476 228 231 21753754 PMC3348862
- [30]Li W Rapid induction and long-term self-renewal of primitive neural precursors from human embryonic stem cells by small molecule inhibitors Proc Natl Acad Sci U S A 2011 108 8299 8304 21525408 PMC3100988
- [31]Liu ML Small molecules enable neurogenin 2 to efficiently convert human fibroblasts into cholinergic neurons Nat Commun 2013 4 2183 23873306 PMC3843951
- [32]Ladewig J Small molecules enable highly efficient neuronal conversion of human fibroblasts Nat Methods 2012 9 575 578 22484851
- [33]Prasad KN Hsie AW Morphologic differentiation of mouse neuroblastoma cells induced in vitro by dibutyryl adenosine 3’:5’-cyclic monophosphate Nature: New biology 1971 233 141 142 4107316
- [34]Boutz PL A post-transcriptional regulatory switch in polypyrimidine tract-binding proteins reprograms alternative splicing in developing neurons Genes Dev 2007 21 1636 1652 17606642 PMC1899473
- [36]Li Q The splicing regulator PTBP2 controls a program of embryonic splicing required for neuronal maturation eLife 2014 3 e01201 24448406 PMC3896118
- [37]Hagino-Yamagishi K Predominant expression of Brn-2 in the postmitotic neurons of the developing mouse neocortex Brain Res 1997 752 261 268 9106466
- [38]Marchetto MC A model for neural development and treatment of Rett syndrome using human induced pluripotent stem cells Cell 2010 143 527 539 21074045 PMC3003590
- [39]Dominguez MH Ayoub AE Rakic P POU-III transcription factors (Brn1, Brn2, and Oct6) influence neurogenesis, molecular identity, and migratory destination of upper-layer cells of the cerebral cortex Cerebral cortex 2013 23 2632 2643 22892427 PMC3792741
- [40]Shibata M Nakao H Kiyonari H Abe T Aizawa S MicroRNA-9 regulates neurogenesis in mouse telencephalon by targeting multiple transcription factors The Journal of neuroscience: the official journal of the Society for Neuroscience 2011 31 3407 3422 21368052 PMC6623912
- [42]Makeyev EV Zhang J Carrasco MA Maniatis T The MicroRNA miR-124 promotes neuronal differentiation by triggering brain-specific alternative pre-mRNA splicing Mol Cell 2007 27 435 448 17679093 PMC3139456
- [44]Giusti SA MicroRNA-9 controls dendritic development by targeting REST eLife 2014 3 PMC4235007 25406064
- [45]Shibasaki T PTB deficiency causes the loss of adherens junctions in the dorsal telencephalon and leads to lethal hydrocephalus Cerebral cortex 2013 23 1824 1835 22705452
- [46]Gao Z The master negative regulator REST/NRSF controls adult neurogenesis by restraining the neurogenic program in quiescent stem cells The Journal of neuroscience: the official journal of the Society for Neuroscience 2011 31 9772 9786 21715642 PMC3365553
- [47]Spellman R Llorian M Smith CW Crossregulation and functional redundancy between the splicing regulator PTB and its paralogs nPTB and ROD1 Mol Cell 2007 27 420 434 17679092 PMC1940037
- [48]Licatalosi DD Ptbp2 represses adult-specific splicing to regulate the generation of neuronal precursors in the embryonic brain Genes Dev 2012 26 1626 1642 22802532 PMC3404389
- [49]Rakic P Evolution of the neocortex: a perspective from developmental biology Nat Rev Neurosci 2009 10 724 735 19763105 PMC2913577
- [51]Sanchez S A cAMP-activated pathway, including PKA and PI3K, regulates neuronal differentiation Neurochemistry international 2004 44 231 242 14602086
- [52]Langmead B Salzberg SL Fast gapped-read alignment with Bowtie 2 Nat Methods 2012 9 357 359 22388286 PMC3322381
- [53]Li H The Sequence Alignment/Map format and SAMtools Bioinformatics 2009 25 2078 2079 19505943 PMC2723002
- [54]Zhang Y Model-based analysis of ChIP-Seq (MACS) Genome biology 2008 9 R137 18798982 PMC2592715
Cited by
Sorted by citations
Function and therapeutic value of astrocytes in neurological diseases
Lee, H.-G., Wheeler, M. A., & Quintana, F. J. (2022) · Nature Reviews Drug Discovery · doi:10.1038/s41573-022-00390-x · Cited by 662 · see citing works
Differentiation and maturation of oligodendrocytes in human three-dimensional neural cultures
Marton, R. M., Miura, Y., Sloan, S. A., Li, Q., Revah, O., Levy, R. J., Huguenard, J. R., & Pașca, S. P. (2019) · Nature Neuroscience · doi:10.1038/s41593-018-0316-9 · Cited by 362 · see citing works
Ma, K., Xu, A., Cui, S., Sun, M.-R., Xue, Y.-C., & Wang, J.-H. (2016) · Translational Psychiatry · doi:10.1038/tp.2016.181 · Cited by 168 · see citing works
Self-citationTherapeutic Potential of PTB Inhibition Through Converting Glial Cells to Neurons in the Brain
Fu, X.-D., & Mobley, W. C. (2023) · Annual Review of Neuroscience · doi:10.1146/annurev-neuro-083022-113120 · Cited by 16 · see citing works
Self-citationReverse the progression of Alzheimer’s disease through Nano-ERASER-based adult neuroregeneration
Wang, M., VanderVeen, B., Xu, Z. A., Xu, Y., Mintzer, J., Murphy, A., Zhang, Q., & Xu, P. (2026) · Cell Biomaterials · doi:10.1016/j.celbio.2026.100575
- Authors
- Xue, Y., Qian, H., Hu, J., Zhou, B., Zhou, Y., Hu, X., Karakhanyan, A., Pang, Z., & Fu, X.-D.
- Affiliations
- Chinese Academy of Sciences (CN)
- University of California San Diego (US)
- Rutgers, The State University of New Jersey (US)
- Corresponding author
- Xue, Yuanchao
- Fu, Xiang-Dong
- Venue
- Nature Neuroscience
- Published
- 2016-04-25
- Volume
- 19
- Issue
- 6
- Pages
- 807-815
- ISSN
- 1097-6256 (ISSN-L)
- 1546-1726
- PMC
- PMC4882254
- OpenAlex
- W2344675989
- Cited by
- 118
- References
- 10
- Citations by year
- 2026: 10 · 2025: 6 · 2024: 9 · 2023: 14 · 2022: 13 · 2021: 16 · 2020: 17 · 2019: 9 · 2018: 11 · 2017: 12 · 2016: 1
- FWCI
- 5.72
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Nature Neuroscience (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- eScholarship (California Digital Library) (submittedVersion)
- Funders
- National Human Genome Research Institute (R01HG004659)
- National Cancer Institute (P30CA023100)
- National Institute of General Medical Sciences (R01GM049369)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Pluripotent Stem Cells Research
- Life Sciences › Neuroscience › Developmental Neuroscience › Neurogenesis and neuroplasticity mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
- Keywords
- neuronal reprogramming, PTB, polypyrimidine tract-binding protein, miR-124, rest, miR-9, Brn2, neuronal maturation, neurogenesis, RNA-binding proteins
- MeSH terms
- Cell Line, Fibroblasts, Humans, Nerve Tissue Proteins, Neurons, Alternative Splicing, Polypyrimidine Tract-Binding Protein, Neural Stem Cells, Cellular Reprogramming
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review