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Replication of individual DNA molecules under electronic control using a protein nanopore

Olasagasti, Felix, Lieberman, Kate R., Benner, Seico, Cherf, Gerald M., Dahl, Joseph M., Deamer, David W., Akeson, Mark·2010·Nature Nanotechnology
DOI 10.1038/nnano.2010.177PMC PMC3711841
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Research works printed but not linked: 24

  1. Benner, S. et al. Sequence-specific detection of individual DNA polymerase complexes in real time using a nanopore. Nature Nanotech. 2, 718–724 (2007). · DOI
  2. Cockroft, S. L., Chu, J., Amorin, M. & Ghadiri, M. R. A single-molecule nanopore device detects DNA polymerase activity with single-nucleotide resolution. J. Am. Chem. Soc. 130, 818–820 (2008). · DOI
  3. Hurt, N., Wang, H., Akeson, M. & Lieberman, K. R. Specific nucleotide binding and rebinding to individual DNA polymerase complexes captured on a nanopore. J. Am. Chem. Soc. 131, 3772–3778 (2009). · DOI
  4. Wilson, N. A. et al. Electronic control of DNA polymerase binding and unbinding to single DNA molecules. ACS Nano 3, 995–1003 (2009). · DOI
  5. Gyarfas, B. et al. Mapping the position of DNA polymerase-bound DNA templates in a nanopore at 5 Å resolution. ACS Nano 3, 1457–1466 (2009). · DOI
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  8. Branton, D. et al. The potential and challenges of nanopore sequencing. Nature Biotechnol. 26, 1146–1153 (2008). · DOI
  9. Moffitt, J. R., Chemla, Y. R., Smith, S. B. & Bustamante, C. Recent advances in optical tweezers. Annu. Rev. Biochem. 77, 205–228 (2008). · DOI
  10. Lechner, R. L., Engler, M. J. & Richardson, C. C. Characterization of strand displacement synthesis catalyzed by bacteriophage T7 DNA polymerase. J. Biol. Chem. 258, 11174–11184 (1983). · DOI
  11. Lechner, R. L. & Richardson, C. C. A preformed, topologically stable replication fork. Characterization of leading strand DNA synthesis catalyzed by T7 DNA polymerase and T7 gene 4 protein. J. Biol. Chem. 258, 11185–11196 (1983). · DOI
  12. Tabor, S. & Richardson, C. C. Selective inactivation of the exonuclease activity of bacteriophage T7 DNA polymerase by in vitro mutagenesis. J. Biol. Chem. 264, 6447–6458 (1989). · DOI
  13. Canceill, D., Viguera, E. & Ehrlich, S. D. Replication slippage of different DNA polymerases is inversely related to their strand displacement efficiency. J. Biol. Chem. 274, 27481–27490 (1999). · DOI
  14. Asseline, U. et al. Nucleic acid-binding molecules with high affinity and base sequence specificity: intercalating agents covalently linked to oligodeoxynucleotides. Proc. Natl Acad. Sci. USA 81, 3297–3301 (1984). · DOI
  15. Asseline, U., Bonfils, E., Dupret, D. & Thuong, N. T. Synthesis and binding properties of oligonucleotides covalently linked to an acridine derivative: new study of the influence of the dye attachment site. Bioconjug. Chem. 7, 369–379 (1996). · DOI
  16. Patel, S. S., Wong, I. & Johnson, K. A. Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant. Biochemistry 30, 511–525 (1991). · DOI
  17. Huber, H. E., Tabor, S. & Richardson, C. C. Escherichia coli thioredoxin stabilizes complexes of bacteriophage T7 DNA polymerase and primed templates. J. Biol. Chem. 262, 16224–16232 (1987). · DOI
  18. Datta, K. & LiCata, V. J. Salt dependence of DNA binding by Thermus aquaticus and Escherichia coli DNA polymerases. J. Biol. Chem. 278, 5694–5701 (2003). · DOI
  19. Rothwell, P. J. & Waksman, G. Structure and mechanism of DNA polymerases. Adv. Protein Chem. 71, 401–440 (2005). · DOI
  20. Astatke, M., Grindley, N. D. & Joyce, C. M. How E. coli DNA polymerase I (Klenow fragment) distinguishes between deoxy- and dideoxynucleotides. J. Mol. Biol. 278, 147–165 (1998). · DOI
  21. Tabor, S. & Richardson, C. C. A single residue in DNA polymerases of the Escherichia coli DNA polymerase I family is critical for distinguishing between deoxy- and dideoxyribonucleotides. Proc. Natl Acad. Sci. USA 92, 6339–6343 (1995). · DOI
  22. Akeson, M., Branton, D., Kasianowicz, J. J., Brandin, E. & Deamer, D. W. Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid and polyuridylic acid as homopolymers or as segments within single RNA molecules. Biophys. J. 77, 3227–3233 (1999). · DOI
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Metadata

Authors
Olasagasti, F., Lieberman, K. R., Benner, S., Cherf, G. M., Dahl, J. M., Deamer, D. W., & Akeson, M.
Venue
Nature Nanotechnology
Publisher
Springer Science and Business Media LLC
Published
2010-09-26
Volume
5
Issue
11
Pages
798-806
ISSN
  • 1748-3387
  • 1748-3395
DOI
10.1038/nnano.2010.177
PMC
PMC3711841
Cited by
156
References
0
Language
en
Licence
www.springer.com/tdm (tdm)

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CoChat. (2026). Citation check: Replication of individual DNA molecules under electronic control using a protein nanopore. https://app.cochat.ai/papers/10.1038/nnano.2010.177
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Olasagasti, F., Lieberman, K. R., Benner, S., Cherf, G. M., Dahl, J. M., Deamer, D. W., & Akeson, M. (2010). Replication of individual DNA molecules under electronic control using a protein nanopore. Nature Nanotechnology. https://doi.org/10.1038/nnano.2010.177