The DOI matches its Crossref record; 155 of the 157 references it cites were found in a registry or an index.
Repeat instability: mechanisms of dynamic mutations
Abstract
Disease-causing repeat instability is an important and unique form of mutation that is linked to more than 40 neurological, neurodegenerative and neuromuscular disorders. DNA repeat expansion mutations are dynamic and ongoing within tissues and across generations. The patterns of inherited and tissue-specific instability are determined by both gene-specific cis-elements and trans-acting DNA metabolic proteins. Repeat instability probably involves the formation of unusual DNA structures during DNA replication, repair and recombination. Experimental advances towards explaining the mechanisms of repeat instability have broadened our understanding of this mutational process. They have revealed surprising ways in which metabolic pathways can drive or protect from repeat instability.
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“By a process that is poorly understood, a small number of specific normal-length STRs undergo somatic or germline expansion and transition to intermediate, pre-mutation, and mutation (affected) repeat unit tract lengths (Mirkin, 2007; Pearson et al., 2005).”
From Disease-Associated Short Tandem Repeats Co-localize with Chromatin Domain Boundaries (2018) · cites this paper as Pearson et al., 2005
In the citing paper
“Notably, a large number of daSTRs known to undergo paternal instability (McMurray, 2010; Pearson et al., 2005) co-localized to boundaries in mouse sperm and not in mouse oocytes (Du et al., 2017), suggesting that daSTRs could be at boundaries when germ line expansion takes place (Figure S3).”
From Disease-Associated Short Tandem Repeats Co-localize with Chromatin Domain Boundaries (2018) · cites this paper as Pearson et al., 2005
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“More and more precise genome sequence annotation indicates that, like microsatellites, minisatellite repeats are spread along the chromosomes and are located in both intergenic and coding regions (45, 46, 61, 77, 78) and thus makes them interesting structures for exploring the mechanisms underlying genome and gene evo…”
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“org/) and they were included into our analyses due to their potential influence on DNA and RNA stability (25).”
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Xu, L., Haasl, R. J., Sun, J., Zhou, Y., Bickhart, D. M., Li, J., Song, J., Sonstegard, T. S., Tassell, C. P. V., Lewin, H. A., et al. (2016) · Genome Biology and Evolution · doi:10.1093/gbe/evw256 · Cited by 33
Microsatellites in the Genome of the Edible Mushroom,Volvariella volvacea
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Structural families of genomic microsatellites
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The G-rich Repeats in FMR1 and C9orf72 Loci Are Hotspots for Local Unpairing of DNA
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BackgroundInfluentialThe Relationship Between Microsatellite Polymorphism and Recombination Hot Spots in the Human Genome
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“As recombination is concentrated in narrow hotspot regions in the human genome, we investigated the relationship between microsatellite polymorphism and recombination hot spots.”
BackgroundRapid unwinding of triplet repeat hairpins by Srs2 helicase of Saccharomyces cerevisiae
Dhar, A., & Lahue, R. S. (2008) · Nucleic Acids Research · doi:10.1093/nar/gkn225 · Cited by 33
“Models of the expansion process suggest that TNR hairpins are embedded within duplex DNA (1,2), possibly making a hairpin more difficult to access and/or remove by cellular proteins.”
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Microsatellite genotyping reveals a signature in breast cancer exomes
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Ivens, E., Cominetti, M. M. D., & Searcey, M. (2022) · Bioorganic & Medicinal Chemistry · doi:10.1016/j.bmc.2022.116897 · Cited by 31
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BackgroundCharacterization of the heart transcriptome of the white shark (Carcharodon carcharias)
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“For example, poly-glutamic acid homopolymers are common in nuclear localization signal proteins [50] and have been implicated in transcription activation/de-activation [41,51-53], whereas proline homopolymers may provide a domain for DNA binding and affect protein-protein interactions [51,52].”
BackgroundIntroduction to Microsatellites: Basics, Trends and Highlights
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“For instance, more than 40 neurological diseases in humans, such as FXS and spinocerebellar ataxia (SCA1) with a polyglutamine tracts, are caused by microsatellite motif length changes in trinucleotide arrays [20].”
da Silva, M. S., Hovel-Miner, G. A., Briggs, E. M., Elias, M. C., & McCulloch, R. (2018) · PLoS Pathogens · doi:10.1371/journal.ppat.1007321 · Cited by 30
Parental age and the risk of bipolar disorders
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“A mature female ovum undergoes 24 cell divisions in total and they are all completed before birth with no further increase with increasing age of the mother (41).”
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“InDel process maintains beneficial as well as the deleterious effect on specific loci in the genome (Pearson et al., 2005).”
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Triptycene-based small molecules modulate (CAG)·(CTG) repeat junctions
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Mechanisms of the FMR1 Repeat Instability: How Does the CGG Sequence Expand?
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“Such secondary structures may be formed by virtually all repeated sequences and may be at the heart of the instability mechanisms of all REDs [35].”
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“Perfect microsatellites are at a higher risk for microsatellite expansion mutations that are causative for numerous neurological/neurodegenerative diseases [3], and the presence of interrupted alleles has been well documented to decrease disease risk.”
BackgroundGFP-Based Fluorescence Assay for CAG Repeat Instability in Cultured Human Cells
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“Expansions in the germ line lead to earlier disease onset and increased severity in affected individuals [1], while expansions in specific neurons exacerbate disease symptoms [3, 4].”
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“The instability has been linked to atypical DNA secondary structures that are prone to erroneous replication or repair.(55,56) Also, the formation of R-loops enhances the instability of the (CAG)n repeat,(57) although it remains unclear how R-loops promote repeat instability.”
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Tandem repeats in human disorders: mechanisms and evolution
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“In addition, srs2-(1-998), srs2-(875–902Δ) and srs2-(1–860) mutants, that retain helicase activity but are defective in either PCNA binding or Rad51p-interaction or both, did not exhibit a decrease or increase in JMs compared to wildtype, even though each of these mutants variously affected repeat fragility and instab…”
BackgroundFluorescent Nucleic Acid Systems for Biosensors
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Cis‐acting factors promoting the CAG intergenerational instability in Machado–Joseph disease
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“From that time on, expansion of different triplet motifs and other consensus sizes (in addition to triplets) have been associated to a growing list of neurological disorders [reviewed in Pearson et al., 2005].”
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BackgroundCis- and Trans-Modifiers of Repeat Expansions: Blending Model Systems with Human Genetics
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“These observations led to the hypothesis that DNA replication as well as recombination and repair, either separately or in combination and at different stages in human development, are responsible mechanisms for repeat instability (Pearson et al., 2005).”
BackgroundSlean, M. M., Panigrahi, G. B., López, A., Pearson, A. B., Tomkinson, A. E., & Pearson, C. E. (2016) · DNA repair · doi:10.1016/j.dnarep.2016.04.002 · Cited by 27
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“The DNA regions that potentially form non-B DNA structures often manifest genomic instability that induces gross chromosomal rearrangements (Pearson et al., 2005; Tanaka et al., 2005; Maizels, 2006; Raghavan and Lieber, 2006; Mirkin, 2007; McMurray, 2010).”
BackgroundAlteration of methylation status in the ATXN3 gene promoter region is linked to the SCA3/MJD
Wang, C., Peng, H., Li, J., Ding, D., Zhao, C. N., Long, Z., Peng, Y., Zhou, X. M., Ye, W., Li, K., et al. (2016) · Neurobiology of Aging · doi:10.1016/j.neurobiolaging.2016.12.014 · Cited by 27
Current advances in neuronal intranuclear inclusion disease
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“Thus, the offspring will carry larger trinucleotide repeats, resulting in an earlier onset of disease [6, 7].”
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The pattern of insertion/deletion polymorphism in Arabidopsis thaliana
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“disease (Sun et al. 2007; Pearson et al. 2005).”
Genetic variation associated with the occurrence and progression of neurological disorders
Little, J., Barakat, C., Martino, R., Pringsheim, T. M., Tremlett, H. L., McKay, K. A., Lieshout, P. H. H. M. V., Walsh, S. J., Gomes, J., & Krewski, D. R. (2016) · NeuroToxicology · doi:10.1016/j.neuro.2016.09.018 · Cited by 28
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“Dynamic mutations are a heterogeneous class of pathologies arising from aberrant expansion of normally polymorphic short tandem repeats interspersed in different genes.(25,26) Most frequent expansions involve trinucleotides, which can be placed inside exons or in the untranslated portion of the gene, but exceptions oc…”
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Macrocyclization strategy for improving candidate profiles in medicinal chemistry
Darlami, O., Pun, R., Ahn, S., Kim, S., & Shin, D. (2024) · European Journal of Medicinal Chemistry · doi:10.1016/j.ejmech.2024.116501 · Cited by 28
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Next generation sequencing for neurological diseases: New hope or new hype?
Keogh, M. J., & Chinnery, P. F. (2012) · Clinical Neurology and Neurosurgery · doi:10.1016/j.clineuro.2012.09.030 · Cited by 25
Stable recombinant production of codon‐scrambled lubricin and mucin in human cells
Shurer, C. R., Wang, Y., Feeney, E., Head, S. E., Zhang, V., Su, J., Zhu, C., Stark, M., Bonassar, L. J., Reesink, H. L., et al. (2019) · Biotechnology and Bioengineering · doi:10.1002/bit.26940 · Cited by 26
In vitro repair of DNA hairpins containing various numbers of CAG/CTG trinucleotide repeats
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“In this study, we examined the in vitro repair of CAG/CTG hairpins of different sizes, which are believed to be intermediates in the processes that result in the increase or decrease in the size of CAG/CTG trinucleotide repeat regions [2-8].”
Closely linkedcis‐acting modifier of expansion of the CGG repeat in high riskFMR1haplotypes
Ennis, S., Murray, A., Brightwell, G., Morton, N. E., & Jacobs, P. A. (2007) · Human Mutation · doi:10.1002/humu.20600 · Cited by 26
“There are now more than 35 genes identified in which variable number tandem repeats cause disease [Pearson et al., 2005].”
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“Some factors are the following: size of the CAG alleles, sex and age, as well as the presence of cis and trans factors and environmental ones (Pearson et al., 2005).”
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Cell-free cloning of highly expanded CTG repeats by amplification of dimerized expanded repeats
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“CTG repeats can form non-classical slipped-strand DNA structures, such as hairpins, which can be bypassed by the DNA replication machinery and thus deleted (23).”
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“The threshold of CAG repeats in SCA17 is higher compared with the threshold of CAG repeats in other CAG repeat diseases (Pearson et al. 2005; van Roon-Mom et al. 2005).”
BackgroundIn-silico analysis of simple and imperfect microsatellites in diverse tobamovirus genomes
Alam, C. M., Singh, A. K., Sharfuddin, C., & Ali, S. (2013) · Gene · doi:10.1016/j.gene.2013.08.046 · Cited by 25
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“Once the expansion exceeds a threshold, it inactivates the expression of the affected gene or the function of the affected gene product, leading to the onset of diseases (3, 5).”
BackgroundCoupling Transcriptional State to Large-Scale Repeat Expansions in Yeast
Shah, K., McGinty, R. J., Egorova, V. I., & Mirkin, S. M. (2014) · Cell Reports · doi:10.1016/j.celrep.2014.10.048 · Cited by 24
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Structural variants in SNCA gene and the implication to synucleinopathies
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“Increasing evidence suggests that hairpin formation occurs viaDNA strand slippage during DNA metabolic processes that introduce DNA strand breaks within or near the repeat region (3, 4, 11).”
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Infantile Childhood Onset of Spinocerebellar Ataxia Type 2
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Are all repeats created equal? Understanding DNA repeats at an individual level
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“Despite their importance, DNA repeats remain the least understood structures in the genome (Gemayel et al. 2012; Martienssen et al. 2004; Pearson et al. 2005).”
BackgroundMendelian, Non-Mendelian, Multigenic Inheritance, and Epigenetics
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Insights into DNA repeat expansions among 900,000 biobank participants
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Long-Range Hairpin Slippage Reconfiguration Dynamics in Trinucleotide Repeat Sequences
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STRs: Ancient Architectures of the Genome beyond the Sequence
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“In many of these disorders, trinucleotide STR expansion at threshold levels of around 35–40 repeats to hundreds of copies in affected cells are pathogenic (Pearson et al. 2005).”
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Proteomic and genomic signatures of repeat instability in cancer and adjacent normal tissues
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“This fast evolution of repeats comes at the cost of promoting genetic diseases, in particular cancer and neurodegeneration (46–48), where repeat dynamics (mostly expansion but in some cases contraction) often correlates with disease severity (49, 50).”
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Coding fungal tandem repeats as generators of fungal diversity
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“Expansions of simple DNA repeats are implicated in nearly 30 human hereditary disorders (Mirkin, 2007; Pearson et al., 2005).”
BackgroundDifferential distribution and occurrence of simple sequence repeats in diverse geminivirus genomes
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Mapping of an origin of DNA replication in the promoter of fragile X gene FMR1
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“…of the movement of the replication fork from an origin to a termination site; the lagging strand must be synthesized discontinuously, with new fragments initiated at Okazaki fragment Initiation Zones (OIZ) located approximately 150 - 300 nt apart (Cleary and Pearson, 2005;Pearson et al., 2005).”
BackgroundStatistical Approaches to Detecting and Analyzing Tandem Repeats in Genomic Sequences
Anisimova, M. O., Pečerska, J., & Schaper, E. (2015) · Frontiers in Bioengineering and Biotechnology · doi:10.3389/fbioe.2015.00031 · Cited by 22
“While the mechanisms shaping TRs are poorly understood, they can evolve by duplication/loss of TR units, recombination, and gene conversion (Pearson et al., 2005; Richard et al., 2008).”
Background
Metadata
- Authors
- Pearson, C. E., Edamura, K. N., & Cleary, J. D.
- Affiliations
- University of Toronto (CA)
- Hospital for Sick Children (CA)
- Corresponding author
- Pearson, Christopher E.
- Venue
- Nature Reviews Genetics
- Published
- 2005-10
- Volume
- 6
- Issue
- 10
- Pages
- 729-742
- ISSN
- 1471-0056 (ISSN-L)
- 1471-0064
- OpenAlex
- W2087505473
- Cited by
- 924
- References
- 157
- Citations by year
- 2026: 13 · 2025: 23 · 2024: 45 · 2023: 29 · 2022: 25 · 2021: 54 · 2020: 27 · 2019: 38 · 2018: 53 · 2017: 45 · 2016: 58 · 2015: 41 · 2014: 55 · 2013: 46 · 2012: 56
- FWCI
- 3.89
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature Reviews Genetics (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Genetic Neurodegenerative Diseases
- Health Sciences › Medicine › Pathology and Forensic Medicine › Genetic factors in colorectal cancer
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA Repair Mechanisms
- Keywords
- repeat instability, dynamic mutation, trinucleotide repeat disorders, neurodegenerative diseases, neuromuscular disorders, cis-regulatory elements, trans-acting proteins, DNA replication, DNA repair, DNA recombination, DNA secondary structure
- MeSH terms
- DNA Repair, DNA Replication, Humans, Models, Genetic, Mutation, Recombination, Genetic, Trinucleotide Repeat Expansion, Heredodegenerative Disorders, Nervous System, DNA Repeat Expansion, Genomic Instability
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