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Genealogical trees, coalescent theory and the analysis of genetic polymorphisms
Abstract
Improvements in genotyping technologies have led to the increased use of genetic polymorphism for inference about population phenomena, such as migration and selection. Such inference presents a challenge, because polymorphism data reflect a unique, complex, non-repeatable evolutionary history. Traditional analysis methods do not take this into account. A stochastic process known as the 'coalescent' presents a coherent statistical framework for analysis of genetic polymorphisms.
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“However, significant effort has been dedicated to understanding protein sequences as emerging from tree-structured evolutionary processes over time or coalescent processes in reverse time 90,91.”
From Learning the protein language: Evolution, structure, and function (2021) · cites this paper as [91]
Citations
Cites
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.
Tajima, F. (1989) · Genetics · doi:10.1093/genetics/123.3.585 · Cited by 14,056
Mutations of bacteria from virus sensitivity to virus resistance
Luria, S. E., & Delbrück, M. (1943) · Genetics · doi:10.1093/genetics/28.6.491 · Cited by 3,894
EVOLUTIONARY RELATIONSHIP OF DNA SEQUENCES IN FINITE POPULATIONS
Tajima, F. (1983) · Genetics · doi:10.1093/genetics/105.2.437 · Cited by 3,112
Mitochondrial DNA and human evolution
Cann, R. L., Stoneking, M., & Wilson, A. C. (1987) · Nature · doi:10.1038/325031a0 · Cited by 3,100
Maddison, W. P. (1997) · Systematic Biology · doi:10.1093/sysbio/46.3.523 · Cited by 3,039
Generating samples under a Wright–Fisher neutral model of genetic variation
Hudson, R. R. (2002) · Bioinformatics · doi:10.1093/bioinformatics/18.2.337 · Cited by 2,397
PHYLOGENIES FROM MOLECULAR SEQUENCES: INFERENCE AND RELIABILITY
Felsenstein, J. (1988) · Annual Review of Genetics · doi:10.1146/annurev.ge.22.120188.002513 · Cited by 2,159
Association mapping in structured populations.
Pritchard, J. K., Stephens, M., Rosenberg, N., & Donnelly, P. (2000) · American Journal of Human Genetics · doi:10.1086/302959 · Cited by 2,066
Rozas, J., & Rozas, R. (1999) · Bioinformatics · doi:10.1093/bioinformatics/15.2.174 · Cited by 1,950
Statistical tests of selective neutrality in the age of genomics
Nielsen, R. (2001) · Heredity · doi:10.1046/j.1365-2540.2001.00895.x · Cited by 1,905
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Borja, G. (2013) · SHAREOK (University of Oklahoma; Oklahoma State University; Central Oklahoma University) · Cited by 1
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Tian, J. P., & Lin, X.-S. (2004) · arXiv (Cornell University) · Cited by 1
Genotypic Characterization of Phytophthora cinnamomi from Ornamental Crops in North Carolina
Schoenbaum, E. (2008) · NCSU Libraries Repository (North Carolina State University Libraries) · Cited by 1
Concepts of Population Genomics
Weale, M. E., & Goldstein, D. B. (2009) · Elsevier eBooks · doi:10.1016/b978-0-12-369420-1.00002-0 · Cited by 1
Seal, S., Datta, A., & Basu, S. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.05.12.443931 · Cited by 1
Tavaré, S. (2006) · Encyclopedia of Life Sciences · doi:10.1038/npg.els.0005458 · Cited by 1
Yang, Z. (2014) · Oxford University Press eBooks · doi:10.1093/acprof:oso/9780199602605.003.0004 · Cited by 1
Robberts, F. J. L. (2005) · SUNScholar (Stellenbosch University) · Cited by 1
The Spread of Buddhist Culture to China between the Third and Seventh Centuries
Deeg, M. (2018) · Empires and Exchanges in Eurasian Late Antiquity · doi:10.1017/9781316146040.018
Chipperfield, J. D. (2010) · OpenGrey (Institut de l'Information Scientifique et Technique)
Population Evolution in Hemophilia
Chung, M.-H. (2012) · InTech eBooks · doi:10.5772/26513
Diversidade craniana humana e suas implicações evolutivas
Bernardo, D. V. (2012) · Digital Library of Theses and Dissertations (Universidade de São Paulo) · doi:10.11606/t.41.2012.tde-22012013-112723
Carvajal‐Rodríguez, A. (2007) · arXiv (Cornell University) · doi:10.48550/arxiv.0801.0124
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Meitei, S. Y., Saraswathy, K. N., & SACHDEVA, M. P. (2012) · Journal of Human Sciences
Park, L. (2009) · Genomics & Informatics · doi:10.5808/gi.2009.7.1.001
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Skoglund, P. (2009)
Biogeography, population genetics and mating systems of natural Nasonia populations
Grillenberger, B. (2009) · University of Groningen research database (University of Groningen / Centre for Information Technology)
In Response: Embracing ‘omic diversity: A mixed academic/government perspective
Schoenfuss, H. L., & Wang, R.-L. (2015) · Environmental Toxicology and Chemistry · doi:10.1002/etc.2842
Bayesian Analysis in Molecular Anthropology
Black, M. L., & Bittles, A. H. (2008) · Murdoch University Research Portal
Divergence Population Genetics of the Genus Capsella
Corcoran, P. (2009)
range evolution in a genus of Central American cloud forest salamanders (Dendrotriton)
Rovito, S. M., Wake, D. B., & Papenfuss, T. J. (2012)
Recent identity by descent in human genetic data - methods and applications
Głodzik, D. (2014) · ERA
Souto-Maior, C. (2015) · Interdisciplinary evolution research · doi:10.1007/978-3-319-16345-1_8
Phylogeographic patterns of the Moroccan lizard - fingered gecko Saurodactylus brosseti
Rosado, D. (2014) · Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT) · doi:10.34626/v9d3-9e87
Diversité génétique et adaptation au milieu chez les arbres forestiers tropicaux
Montaigne, W. (2011)
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Scheffler, K., & Seoighe, C. (2005) · Series on advances in bioinformatics and computational biology · doi:10.1142/9781860946882_0005
Yang, Z. (2014) · Oxford University Press eBooks · doi:10.1093/acprof:oso/9780199602605.003.0007 · Cited by 1
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da Costa, P. C. (2016) · doi:10.11606/t.59.2016.tde-18112015-101948
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Nakagome, S., & Oota, H. (2016) · Encyclopedia of Life Sciences · doi:10.1002/9780470015902.a0026516
Comparison of phylogenetic methods and tests on trees
Yang, Z. (2014) · Oxford University Press eBooks · doi:10.1093/acprof:oso/9780199602605.003.0005
Bouillei, M., & Bousquet, J. (2005)
Approaches For Inferring Past Population Size Changes From Genome-wide Genetic Data.
Theunert, C. (2014) · Max Planck Digital Library
Population Genomics of Saccharomyces Yeasts
Tsai, I. J. (2009) · doi:10.25560/4361
VariScan Analysis of large-scale DNA sequence polymorphism data
Vilella, A. J., Blanco-García, A., Hütter, S., & Rozas, J. (2013)
RNA Virus Evolution: a Cross-scale, Disease Dynamic Perspective
Scholle, S. O. (2016) · DukeSpace (Duke University)
On the evolutionary history of the iberian Sooty Copper butterflies
Ciências, F. D. (2011)
História genealógica do conceito de homologia: uma análise filomemética
Mourão, I. A. C. L. (2017) · Digital Library of Theses and Dissertations (Universidade de São Paulo) · doi:10.11606/d.38.2017.tde-08032017-112112
The spread of Buddhist culture to China between the Third and Seventh Century
Deeg, M. (2018) · ORCA Online Research @Cardiff (Cardiff University)
Barraclough, T. G. (2019) · Oxford University Press eBooks · doi:10.1093/oso/9780198749745.003.0002
Barraclough, T. G. (2019) · Oxford University Press eBooks · doi:10.1093/oso/9780198749745.003.0004
The evidence for species—phenotypic and genetic clustering
Barraclough, T. G. (2019) · Oxford University Press eBooks · doi:10.1093/oso/9780198749745.003.0003
How does species richness accumulate over time?
Barraclough, T. G. (2019) · Oxford University Press eBooks · doi:10.1093/oso/9780198749745.003.0010
Coalescent Models of Demographic History: Application to Plant Domestication
François, O., Cubry, P., Burgarella, C., & Vigouroux, Y. (2020) · Population genomics · doi:10.1007/13836_2020_74
Brown, P. G. M. (2018) · Cambridge University Press eBooks · doi:10.1017/9781316146040.009
Tsuda, Y. (2021) · 森林遺伝育種 · doi:10.32135/fgtb.10.3_142
Probabilistic Models for Species Tree Inference and Orthology Analysis
Ullah, I. (2015) · KTH Publication Database DiVA (KTH Royal Institute of Technology)
Freeland, J. R., Kirk, H., & Petersen, S. D. (2011) · Molecular Ecology · doi:10.1002/9780470979365.ch6
Freeland, J. R., Kirk, H., & Petersen, S. D. (2011) · Molecular Ecology · doi:10.1002/9780470979365.refs
Cosmo, N. D., & Maas, M. (2018) · Cambridge University Press eBooks · doi:10.1017/9781316146040.003
(2018) · Cambridge University Press eBooks · doi:10.1017/9781316146040.032
Cosmo, N. D., & Maas, M. (2018) · Cambridge University Press eBooks · doi:10.1017/9781316146040.031
Cameron, A. (2018) · Cambridge University Press eBooks · doi:10.1017/9781316146040.030
Cosmo, N. D., & Maas, M. (2018) · Cambridge University Press eBooks · doi:10.1017/9781316146040.001
Allendorf, F. W., Funk, W. C., Aitken, S. N., Byrne, M. M., & Luikart, G. (2022) · Oxford University Press eBooks · doi:10.1093/oso/9780198856566.003.0013
Allendorf, F. W., Funk, W. C., Aitken, S. N., Byrne, M. M., & Luikart, G. (2022) · Oxford University Press eBooks · doi:10.1093/oso/9780198856566.003.0016
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Taylor, H. R. (2022) · Oxford University Press eBooks · doi:10.1093/oso/9780198856566.003.0024
Allendorf, F. W., Funk, W. C., Aitken, S. N., Byrne, M. M., & Luikart, G. (2022) · Oxford University Press eBooks · doi:10.1093/oso/9780198856566.003.0018
Allendorf, F. W., Funk, W. C., Aitken, S. N., Byrne, M. M., & Luikart, G. (2022) · Oxford University Press eBooks · doi:10.1093/oso/9780198856566.003.0017
Allendorf, F. W., Funk, W. C., Aitken, S. N., Byrne, M. M., & Luikart, G. (2022) · Oxford University Press eBooks · doi:10.1093/oso/9780198856566.003.0012
Allendorf, F. W., Funk, W. C., Aitken, S. N., Byrne, M. M., & Luikart, G. (2022) · Oxford University Press eBooks · doi:10.1093/oso/9780198856566.003.0010
Allendorf, F. W., Funk, W. C., Aitken, S. N., Byrne, M. M., & Luikart, G. (2022) · Oxford University Press eBooks · doi:10.1093/oso/9780198856566.003.0008 · Cited by 2
Allendorf, F. W., Funk, W. C., Aitken, S. N., Byrne, M. M., & Luikart, G. (2022) · Oxford University Press eBooks · doi:10.1093/oso/9780198856566.003.0022 · Cited by 1
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Frankham, R., Ballou, J. D., Ralls, K., Eldridge, M. D. B., Dudash, M. R., Fenster, C. B., Lacy, R. C., & Sunnucks, P. (2017) · Oxford University Press eBooks · doi:10.1093/oso/9780198783398.003.0006
Yang, Z. (2014) · Oxford University Press eBooks · doi:10.1093/acprof:oso/9780199602605.003.0006
Frankham, R., Ballou, J. D., Ralls, K., Eldridge, M. D. B., Dudash, M. R., Fenster, C. B., Lacy, R. C., & Sunnucks, P. (2017) · Oxford University Press eBooks · doi:10.1093/oso/9780198783398.003.0008
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Frankham, R., Ballou, J. D., Ralls, K., Eldridge, M. D. B., Dudash, M. R., Fenster, C. B., Lacy, R. C., & Sunnucks, P. (2017) · Oxford University Press eBooks · doi:10.1093/oso/9780198783398.003.0002 · Cited by 1
Yang, Z. (2014) · Oxford University Press eBooks · doi:10.1093/acprof:oso/9780199602605.003.0013
Molecular clock and estimation of species divergence times
Yang, Z. (2014) · Oxford University Press eBooks · doi:10.1093/acprof:oso/9780199602605.003.0010
Frankham, R., Ballou, J. D., Ralls, K., Eldridge, M. D. B., Dudash, M. R., Fenster, C. B., Lacy, R. C., & Sunnucks, P. (2017) · Oxford University Press eBooks · doi:10.1093/oso/9780198783398.003.0015
Hoelzel, A. R. (2014) · doi:10.1093/obo/9780199941728-0051
(2004) · Encyclopedic Dictionary of Genetics, Genomics and Proteomics · doi:10.1002/0471684228.egp02441
Yang, Z. (2014) · Oxford University Press eBooks · doi:10.1093/acprof:oso/9780199602605.003.0008
Are there populations suffering genetic erosion that would benefit from augmented gene flow?
Frankham, R., Ballou, J. D., Ralls, K., Eldridge, M. D. B., Dudash, M. R., Fenster, C. B., Lacy, R. C., & Sunnucks, P. (2017) · Oxford University Press eBooks · doi:10.1093/oso/9780198783398.003.0011
Weiss, K. M., & Buchanan, A. V. (2004) · Wiley eBooks · doi:10.1002/0471532657.refs
Phylogeny reconstruction: overview
Yang, Z. (2014) · Oxford University Press eBooks · doi:10.1093/acprof:oso/9780199602605.003.0003
Cosmo, N. D., & Maas, M. (2018) · Cambridge University Press eBooks · doi:10.1017/9781316146040.033
Managing gene flow among isolated population fragments. II. Management based on kinship
Frankham, R., Ballou, J. D., Ralls, K., Eldridge, M. D. B., Dudash, M. R., Fenster, C. B., Lacy, R. C., & Sunnucks, P. (2017) · Oxford University Press eBooks · doi:10.1093/oso/9780198783398.003.0013
Loog, L., & Larson, G. (2019) · Cambridge University Press eBooks · doi:10.1017/9781139013826.002 · Cited by 1
Cosmo, N. D., & Maas, M. (2018) · Cambridge University Press eBooks · doi:10.1017/9781316146040.002
Barraclough, T. G. (2019) · Oxford University Press eBooks · doi:10.1093/oso/9780198749745.003.0001
Barraclough, T. G. (2019) · Oxford University Press eBooks · doi:10.1093/oso/9780198749745.003.0011
(2007) · Springer eBooks · doi:10.1007/978-3-540-33568-9_3
Plant genetic barcoding of some Legume tree species grown in Egypt
(2021) · Middle East Journal of Agriculture Research · doi:10.36632/mejar/2021.10.1.13
Metadata
- Authors
- Rosenberg, N. A., & Nordborg, M.
- Affiliations
- University of Southern California (US)
- Corresponding author
- Nordborg, Magnus
- Venue
- Nature Reviews Genetics
- Published
- 2002-05
- Volume
- 3
- Issue
- 5
- Pages
- 380-390
- ISSN
- 1471-0056 (ISSN-L)
- 1471-0064
- OpenAlex
- W2114058116
- Cited by
- 750
- References
- 110
- Citations by year
- 2026: 6 · 2025: 6 · 2024: 15 · 2023: 19 · 2022: 50 · 2021: 24 · 2020: 23 · 2019: 33 · 2018: 60 · 2017: 41 · 2016: 33 · 2015: 31 · 2014: 49 · 2013: 32 · 2012: 33
- FWCI
- 3.02
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature Reviews Genetics (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic diversity and population structure
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Forensic and Genetic Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Evolution and Genetic Dynamics
- Keywords
- genealogical trees, coalescent theory, genetic polymorphism, population genetics, migration, natural selection, genotyping, stochastic processes, evolutionary history
- MeSH terms
- Animals, Genetics, Population, Humans, Pedigree, Polymorphism, Genetic, Recombination, Genetic, Stochastic Processes, Evolution, Molecular
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