Cited by 750Genetic diversity and population structureForensic and Genetic ResearchEvolution and Genetic Dynamics

The DOI matches its Crossref record; 110 of the 110 references it cites were found in a registry or an index.

Genealogical trees, coalescent theory and the analysis of genetic polymorphisms

Rosenberg, Noah A., Nordborg, Magnus·2002·Nature Reviews Genetics

Open this paper in CoChat — free account

Abstract

Improvements in genotyping technologies have led to the increased use of genetic polymorphism for inference about population phenomena, such as migration and selection. Such inference presents a challenge, because polymorphism data reflect a unique, complex, non-repeatable evolutionary history. Traditional analysis methods do not take this into account. A stochastic process known as the 'coalescent' presents a coherent statistical framework for analysis of genetic polymorphisms.

Integrity signals

Registry

Crossref · 10.1038/nrg795

Cites

110 of 110 references verified0 citation errors · 0 not checkable

Statistics

Recomputing p-values needs the paper’s full text.

Claims the paper makes

This paper’s full text isn’t openly available, so its claims and self-check weren’t run. The registry and citation checks still apply.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.
Tajima, F. (1989) · Genetics · doi:10.1093/genetics/123.3.585 · Cited by 14,056
Mutations of bacteria from virus sensitivity to virus resistance
Luria, S. E., & Delbrück, M. (1943) · Genetics · doi:10.1093/genetics/28.6.491 · Cited by 3,894
EVOLUTIONARY RELATIONSHIP OF DNA SEQUENCES IN FINITE POPULATIONS
Tajima, F. (1983) · Genetics · doi:10.1093/genetics/105.2.437 · Cited by 3,112
Mitochondrial DNA and human evolution
Cann, R. L., Stoneking, M., & Wilson, A. C. (1987) · Nature · doi:10.1038/325031a0 · Cited by 3,100
Gene Trees in Species Trees
Maddison, W. P. (1997) · Systematic Biology · doi:10.1093/sysbio/46.3.523 · Cited by 3,039
Generating samples under a Wright–Fisher neutral model of genetic variation
Hudson, R. R. (2002) · Bioinformatics · doi:10.1093/bioinformatics/18.2.337 · Cited by 2,397
PHYLOGENIES FROM MOLECULAR SEQUENCES: INFERENCE AND RELIABILITY
Felsenstein, J. (1988) · Annual Review of Genetics · doi:10.1146/annurev.ge.22.120188.002513 · Cited by 2,159
Association mapping in structured populations.
Pritchard, J. K., Stephens, M., Rosenberg, N., & Donnelly, P. (2000) · American Journal of Human Genetics · doi:10.1086/302959 · Cited by 2,066
DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis.
Rozas, J., & Rozas, R. (1999) · Bioinformatics · doi:10.1093/bioinformatics/15.2.174 · Cited by 1,950
Statistical tests of selective neutrality in the age of genomics
Nielsen, R. (2001) · Heredity · doi:10.1046/j.1365-2540.2001.00895.x · Cited by 1,905

Show all 110 references

Sorted by citations

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
Librado, P., & Rozas, J. (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp187 · Cited by 16,147
DnaSP, DNA polymorphism analyses by the coalescent and other methods
Rozas, J., Sánchez-DelBarrio, J. C., Messeguer, X., & Rozas, R. (2003) · Bioinformatics · doi:10.1093/bioinformatics/btg359 · Cited by 6,133
Sequence-Based Species Delimitation for the DNA Taxonomy of Undescribed Insects
Pons, J., Barraclough, T. G., Gómez‐Zurita, J., Cardoso, A., Duran, D. P., Hazell, S. P., Kamoun, S., Sumlin, W. D., & Vogler, A. P. (2006) · Systematic Biology · doi:10.1080/10635150600852011 · Cited by 2,791
The incomplete natural history of mitochondria
Ballard, J. W. O., & Whitlock, M. C. (2003) · Molecular Ecology · doi:10.1046/j.1365-294x.2003.02063.x · Cited by 2,289
Delimiting Species Using Single-Locus Data and the Generalized Mixed Yule Coalescent Approach: A Revised Method and Evaluation on Simulated Data Sets
Fujisawa, T., & Barraclough, T. G. (2013) · Systematic Biology · doi:10.1093/sysbio/syt033 · Cited by 1,707
DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics
Hajibabaei, M., Singer, G. A. C., Hebert, P. D. N., & Hickey, D. A. (2007) · Trends in Genetics · doi:10.1016/j.tig.2007.02.001 · Cited by 1,160
Phylogeographic insights into cryptic glacial refugia
Provan, J., & Bennett, K. D. (2008) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2008.06.010 · Cited by 1,096
Inferring Species Trees Directly from Biallelic Genetic Markers: Bypassing Gene Trees in a Full Coalescent Analysis
Bryant, D., Bouckaert, R., Felsenstein, J., Rosenberg, N. A., & RoyChoudhury, A. (2012) · Molecular Biology and Evolution · doi:10.1093/molbev/mss086 · Cited by 974
The utility of single nucleotide polymorphisms in inferences of population history
Brumfield, R. T., Beerli, P., Nickerson, D. A., & Edwards, S. V. (2003) · Trends in Ecology & Evolution · doi:10.1016/s0169-5347(03)00018-1 · Cited by 694
INVITED REVIEW: Using genome scans of DNA polymorphism to infer adaptive population divergence
Storz, J. F. (2005) · Molecular Ecology · doi:10.1111/j.1365-294x.2005.02437.x · Cited by 668
The Origins of Plant Pathogens in Agro-Ecosystems
Stukenbrock, E. H., & McDonald, B. A. (2008) · Annual Review of Phytopathology · doi:10.1146/annurev.phyto.010708.154114 · Cited by 626
Coalescent Theory: An Introduction
Sigwart, J. D. (2009) · Systematic Biology · doi:10.1093/schbul/syp004 · Cited by 590
Detecting genetic responses to environmental change
Hoffmann, A. A., & Willi, Y. (2008) · Nature Reviews Genetics · doi:10.1038/nrg2339 · Cited by 552
Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing
VERA, J. C., WHEAT, C. W., FESCEMYER, H. W., FRILANDER, M. J., CRAWFORD, D. L., HANSKI, I., & MARDEN, J. H. (2008) · Molecular Ecology · doi:10.1111/j.1365-294x.2008.03666.x · Cited by 714
Genetic Management of Fragmented Animal and Plant Populations
Frankham, R., Ballou, J. D., Ralls, K., Eldridge, M. D. B., Dudash, M. R., Fenster, C. B., Lacy, R. C., & Sunnucks, P. (2017) · doi:10.1093/oso/9780198783398.001.0001 · Cited by 540
Crop genomics: advances and applications
Morrell, P. L., Buckler, E. S., & Ross‐Ibarra, J. (2011) · Nature Reviews Genetics · doi:10.1038/nrg3097 · Cited by 519
Signatures of natural selection in the human genome
Bamshad, M. J., & Wooding, S. (2003) · Nature Reviews Genetics · doi:10.1038/nrg999 · Cited by 482
Learning the protein language: Evolution, structure, and function
Bepler, T., & Berger, B. (2021) · Cell Systems · doi:10.1016/j.cels.2021.05.017 · Cited by 483
Genomic insights into positive selection
Biswas, S., & Akey, J. M. (2006) · Trends in Genetics · doi:10.1016/j.tig.2006.06.005 · Cited by 483
Tackling the population genetics of clonal and partially clonal organisms
Halkett, F., SIMON, J., & Balloux, F. (2005) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2005.01.001 · Cited by 468
A Statistical Approach for Distinguishing Hybridization and Incomplete Lineage Sorting
Joly, S., McLenachan, P. A., & Lockhart, P. J. (2009) · The American Naturalist · doi:10.1086/600082 · Cited by 429
The population genetics and evolutionary epidemiology of RNA viruses
Moyá, A., Holmes, E. C., & Gónzález‐Candelas, F. (2004) · Nature Reviews Microbiology · doi:10.1038/nrmicro863 · Cited by 402
Reconciling the analysis of IBD and IBS in complex trait studies
Powell, J. E., Visscher, P. M., & Goddard, M. E. (2010) · Nature Reviews Genetics · doi:10.1038/nrg2865 · Cited by 400
Patterns of Human Genetic Diversity: Implications for Human Evolutionary History and Disease
Tishkoff, S. A., & Verrelli, B. C. (2003) · Annual Review of Genomics and Human Genetics · doi:10.1146/annurev.genom.4.070802.110226 · Cited by 396
Genetics and the conservation of natural populations: allozymes to genomes
Allendorf, F. W. (2016) · Molecular Ecology · doi:10.1111/mec.13948 · Cited by 409
Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting
Pollard, D. A., Iyer, V. N., Moses, A. M., & Eisen, M. B. (2006) · PLoS Genetics · doi:10.1371/journal.pgen.0020173 · Cited by 389
Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics
Edwards, S. V., Xi, Z., Janke, A., Faircloth, B. C., McCormack, J. E., Glenn, T. C., Zhong, B., Wu, S., Lemmon, E. M., Lemmon, A. R., et al. (2015) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2015.10.027 · Cited by 378
DNA-based species delimitation in algae
Leliaert, F., Verbruggen, H., Vanormelingen, P., Steen, F., Lopez-Bautista, J. M., Zuccarello, G. C., & Clerck, O. D. (2014) · European Journal of Phycology · doi:10.1080/09670262.2014.904524 · Cited by 381
DNA Sequence Polymorphism Analysis Using DnaSP
Rozas, J. (2009) · Methods in molecular biology · doi:10.1007/978-1-59745-251-9_17 · Cited by 365
The Confounding Effect of Population Structure on Bayesian Skyline Plot Inferences of Demographic History
Heller, R., Chikhi, L., & SIEGISMUND, H. R. (2013) · PLoS ONE · doi:10.1371/journal.pone.0062992 · Cited by 352
A biologist's guide to mathematical modeling in ecology and evolution
Otto, S. P., & Day, T. (2007) · Choice Reviews Online · doi:10.5860/choice.44-6894 · Cited by 350
Cancer Evolution: Mathematical Models and Computational Inference
Beerenwinkel, N., Schwarz, R. F., Gerstung, M., & Markowetz, F. M. (2014) · Systematic Biology · doi:10.1093/sysbio/syu081 · Cited by 352
Computer simulations: tools for population and evolutionary genetics
Hoban, S., Bertorelle, G., & Gaggiotti, O. E. (2012) · Nature Reviews Genetics · doi:10.1038/nrg3130 · Cited by 351
Towards unbiased parentage assignment: combining genetic, behavioural and spatial data in a Bayesian framework
Hadfield, J. D., Richardson, D. S., & Burke, T. A. (2006) · Molecular Ecology · doi:10.1111/j.1365-294x.2006.03050.x · Cited by 332
Molecular phylogeny of the speciose vole genus Microtus (Arvicolinae, Rodentia) inferred from mitochondrial DNA sequences
Jaarola, M., Martínková, N., Gündüz, İ., Brunhoff, C., Zima, J., Nadachowski, A., Amori, G., Bulatova, N. S., Chondropoulos, B., Fraguedakis-Tsolis, S., et al. (2004) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2004.07.015 · Cited by 327
A decade of seascape genetics: contributions to basic and applied marine connectivity
Selkoe, K., D’Aloia, C. C., Crandall, E. D., Iacchei, M. J., Liggins, L., Puritz, J. B., von der Heyden, S., & Toonen, R. J. (2016) · Marine Ecology Progress Series · doi:10.3354/meps11792 · Cited by 314
Molecular Estimation of Dispersal for Ecology and Population Genetics
Broquet, T., & PETIT, E. J. (2009) · Annual Review of Ecology Evolution and Systematics · doi:10.1146/annurev.ecolsys.110308.120324 · Cited by 335
Genes in new environments: genetics and evolution in biological control
Roderick, G. K., & Navajas, M. (2003) · Nature Reviews Genetics · doi:10.1038/nrg1201 · Cited by 312
DNA Sequence Variation and Selection of Tag Single-Nucleotide Polymorphisms at Candidate Genes for Drought-Stress Response in Pinus taeda L.
González‐Martínez, S. C., Ersoz, E. S., Brown, G., Wheeler, N. C., & Neale, D. B. (2005) · Genetics · doi:10.1534/genetics.105.047126 · Cited by 280
Molecular Evolution
Yang, Z. (2014) · doi:10.1093/acprof:oso/9780199602605.001.0001 · Cited by 282
The study of structured populations — new hope for a difficult and divided science
Hey, J., & Machado, C. A. (2003) · Nature Reviews Genetics · doi:10.1038/nrg1112 · Cited by 269
Recent divergence with gene flow in Tennessee cave salamanders (Plethodontidae:Gyrinophilus) inferred from gene genealogies
Niemiller, M. L., Fitzpatrick, B. M., & Miller, B. T. (2008) · Molecular Ecology · doi:10.1111/j.1365-294x.2008.03750.x · Cited by 249
Estimating recombination rates from population-genetic data
Stumpf, M. P. H., & McVean, G. (2003) · Nature Reviews Genetics · doi:10.1038/nrg1227 · Cited by 259
Problems and Cautions With Sequence Mismatch Analysis and Bayesian Skyline Plots to Infer Historical Demography
Grant, W. S. (2015) · Journal of Heredity · doi:10.1093/jhered/esv020 · Cited by 250
The Inference of Gene Trees with Species Trees
Szöllősi, G. J., Tannier, É., Daubin, V., & Boussau, B. (2014) · Systematic Biology · doi:10.1093/sysbio/syu048 · Cited by 256
Phylodynamics of Infectious Disease Epidemics
Volz, E., Pond, S. L. K., Ward, M. J., Brown, A., & Frost, S. D. W. (2009) · Genetics · doi:10.1534/genetics.109.106021 · Cited by 238
Development and application of a phylogenomic toolkit: Resolving the evolutionary history of Madagascar’s lemursPreprint
Horvath, J. E., Weisrock, D. W., Embry, S. L., Fiorentino, I., Balhoff, J. P., Kappeler, P. M., Wray, G. A., Willard, H. F., & Yoder, A. D. (2008) · Genome Research · doi:10.1101/gr.7265208 · Cited by 224
Delimiting Species in Recent Radiations
Shaffer, H. B., & Thomson, R. C. (2007) · Systematic Biology · doi:10.1080/10635150701772563 · Cited by 214
Forest‐tree population genomics and adaptive evolution
González‐Martínez, S. C., Krutovsky, K. V., & Neale, D. B. (2006) · New Phytologist · doi:10.1111/j.1469-8137.2006.01686.x · Cited by 217
Parasites: proxies for host genealogy and ecology?
Nieberding, C. M., & Olivieri, I. (2006) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2006.11.012 · Cited by 215
The burgeoning field of statistical phylogeography
Knowles, L. L. (2004) · Journal of Evolutionary Biology · doi:10.1046/j.1420-9101.2003.00644.x · Cited by 212
Spatial dynamics and genetics of infectious diseases on heterogeneous landscapes
Real, L. A., & Biek, R. (2007) · Journal of The Royal Society Interface · doi:10.1098/rsif.2007.1041 · Cited by 206
Predicting life history parameters for all fishes worldwide
Thorson, J. T., Munch, S. B., Cope, J. M., & Gao, J. (2017) · Ecological Applications · doi:10.1002/eap.1606 · Cited by 216
Cryptic Distant Relatives Are Common in Both Isolated and Cosmopolitan Genetic Samples
Henn, B. M., Hon, L., Macpherson, J. M., Eriksson, N., Saxonov, S., Pe’er, I., & Mountain, J. L. (2012) · PLoS ONE · doi:10.1371/journal.pone.0034267 · Cited by 197
Genetic Patterns in European Geometrid Moths Revealed by the Barcode Index Number (BIN) System
Hausmann, A., Godfray, H. C. J., Huemer, P., Mutanen, M., Rougerie, R., van NIEUKERKEN, E. J., Ratnasingham, S., & Hebert, P. D. N. (2013) · PLoS ONE · doi:10.1371/journal.pone.0084518 · Cited by 199
Generalized Genomic Distance–Based Regression Methodology for Multilocus Association Analysis
Wessel, J., & Schork, N. J. (2006) · The American Journal of Human Genetics · doi:10.1086/508346 · Cited by 190
Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism
Novikova, P. Y., Hohmann, N., Nizhynska, V., Tsuchimatsu, T., Ali, J., Muir, G., Guggisberg, A., Paape, T. D., Schmid, K., Федоренко, О. М., et al. (2016) · Nature Genetics · doi:10.1038/ng.3617 · Cited by 179
Population Genetics of Speciation in Two Closely Related Wild Tomatoes (Solanum Section Lycopersicon)
Städler, T., Arunyawat, U., & Stephan, W. (2008) · Genetics · doi:10.1534/genetics.107.081810 · Cited by 184
Deep phylogenetic incongruence in the angiosperm clade Rosidae
Sun, M., Soltis, P. S., Soltis, P. S., Zhu, X., Burleigh, J. G., & Chen, Z. (2014) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2014.11.003 · Cited by 182
The Maintenance of Genetic Variation Due to Asymmetric Gene Flow in Dendritic Metapopulations
Morrissey, M. B., & de Kerckhove, D. T. (2009) · The American Naturalist · doi:10.1086/648311 · Cited by 186
Conservation and the Genomics of Populations
Allendorf, F. W., Funk, W. C., Aitken, S. N., Byrne, M., Luikart, G., & Antunes, A. (2022) · doi:10.1093/oso/9780198856566.001.0001 · Cited by 207
Sequence- vs. chip-assisted genomic selection: accurate biological information is advised
Miguel Pérez-enciso, A., Flórez, J. C. R., & Legarra, A. (2015) · Genetics Selection Evolution · doi:10.1186/s12711-015-0117-5 · Cited by 183
Postglacial recolonization and cpDNA variation of silver birch, Betula pendula
Palmé, A. E., Su, Q., Rautenberg, A., Manni, F., & Lascoux, M. (2002) · Molecular Ecology · doi:10.1046/j.1365-294x.2003.01724.x · Cited by 178
Assessing the Performance of Single-Copy Genes for Recovering Robust Phylogenies
Aguileta, G., Marthey, S., Chiapello, H., Lebrun, M., Rodolphe, F., Fournier, E., Gendrault-Jacquemard, A., & Giraud, T. (2008) · Systematic Biology · doi:10.1080/10635150802306527 · Cited by 179
E VOLUTION OF W HEAT S TREAK M OSAIC V IRUS : Dynamics of Population Growth Within Plants May Explain Limited Variation
French, R. C., & Stenger, D. C. (2003) · Annual Review of Phytopathology · doi:10.1146/annurev.phyto.41.052002.095559 · Cited by 179
PHYLOGENY AND PHYLOGEOGRAPHY OF THE LIOLAEMUS DARWINII COMPLEX (SQUAMATA: LIOLAEMIDAE): EVIDENCE FOR INTROGRESSION AND INCOMPLETE LINEAGE SORTING
Morando, M. M., Ávila, L. J., Baker, J., & Sites, J. W. (2004) · Evolution · doi:10.1111/j.0014-3820.2004.tb00416.x · Cited by 166
Widespread Genealogical Nonmonophyly in Species of Pinus Subgenus Strobus
Syring, J. V., Farrell, K., Businský, R., Cronn, R., & Liston, A. (2007) · Systematic Biology · doi:10.1080/10635150701258787 · Cited by 161
VariScan: Analysis of evolutionary patterns from large-scale DNA sequence polymorphism data
Vilella, A. J., Blanco-García, A., Hütter, S., & Rozas, J. (2005) · Computer applications in the biosciences · doi:10.1093/bioinformatics/bti403 · Cited by 158
Delimiting Species without Nuclear Monophyly in Madagascar's Mouse Lemurs
Weisrock, D. W., Rasoloarison, R. M., Fiorentino, I., Ralison, J. M., Goodman, S. M., Kappeler, P. M., & Yoder, A. D. (2010) · PLoS ONE · doi:10.1371/journal.pone.0009883 · Cited by 153
Combined analyses of kinship and FST suggest potential drivers of chaotic genetic patchiness in high gene‐flow populations
Iacchei, M. J., Ben‐Horin, T., Selkoe, K. A., Bird, C. E., García‐Rodríguez, F. J., & Toonen, R. J. (2013) · Molecular Ecology · doi:10.1111/mec.12341 · Cited by 153
The impact of whole-genome sequencing on the reconstruction of human population history
Veeramah, K. R., & Hammer, M. F. (2014) · Nature Reviews Genetics · doi:10.1038/nrg3625 · Cited by 151
A genomic scan for divergent selection in a secondary contact zone between Atlantic and Gulf of Mexico oysters, Crassostrea virginica
Murray, M. C., & Hare, M. P. (2006) · Molecular Ecology · doi:10.1111/j.1365-294x.2006.03060.x · Cited by 149
NUCLEAR LOCI AND COALESCENT METHODS SUPPORT ANCIENT HYBRIDIZATION AS CAUSE OF MITOCHONDRIAL PARAPHYLY BETWEEN GADWALL AND FALCATED DUCK (ANASSPP.)
Peters, J. L., Zhuravlev, Y. N., Fefelov, I., Logie, A., & Omland, K. E. (2007) · Evolution · doi:10.1111/j.1558-5646.2007.00149.x · Cited by 149
Relating Phylogenetic Trees to Transmission Trees of Infectious Disease Outbreaks
Ypma, R. J. F., van Ballegooijen, W. M., & Wallinga, J. (2013) · Genetics · doi:10.1534/genetics.113.154856 · Cited by 147
Common misconceptions in molecular ecology: echoes of the modern synthesis
Karl, S. A., Toonen, R. J., Grant, W. S., & Bowen, B. W. (2012) · Molecular Ecology · doi:10.1111/j.1365-294x.2012.05576.x · Cited by 149
Embracing heterogeneity: coalescing the Tree of Life and the future of phylogenomics
Bravo, G. A., Antonelli, A., Bacon, C. D., Bartoszek, K., Blom, M. P. K., Huynh, S., Jones, G., Knowles, L. L., Lamichhaney, S., Marcussen, T., et al. (2019) · PeerJ · doi:10.7717/peerj.6399 · Cited by 146
Incomplete estimates of genetic diversity within species: Implications for DNA barcoding
Phillips, J. D., Gillis, D. J., & Hanner, R. (2019) · Ecology and Evolution · doi:10.1002/ece3.4757 · Cited by 154
Two pulses of diversification across the Isthmus of Tehuantepec in a montane Mexican bird fauna
Barber, B. R., & Klicka, J. (2010) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2010.0343 · Cited by 140
Multilocus Phylogenetics of a Rapid Radiation in the Genus Thomomys (Rodentia: Geomyidae)
Belfiore, N. M., Liu, L., & Moritz, C. C. (2008) · Systematic Biology · doi:10.1080/10635150802044011 · Cited by 138
An African American Paternal Lineage Adds an Extremely Ancient Root to the Human Y Chromosome Phylogenetic Tree
Mendez, F. L., Krahn, T., Schrack, B., Krahn, A.-M., Veeramah, K. R., Woerner, A. E., Fomine, F. L. M., Bradman, N., Thomas, M., Karafet, T. M., et al. (2013) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2013.02.002 · Cited by 141
The Impact of Genomics on the Study of Natural Variation in Arabidopsis
Borevitz, J., & Nordborg, M. (2003) · PLANT PHYSIOLOGY · doi:10.1104/pp.103.023549 · Cited by 136
Progress and prospects in mapping recent selection in the genome
Thornton, K., Jensen, J. D., Becquet, C., & Andolfatto, P. (2007) · Heredity · doi:10.1038/sj.hdy.6800967 · Cited by 137
Evidence of genetic distinction and long‐term population decline in wolves (Canis lupus) in the Italian Apennines
Lucchini, V., Galov, A., & Randi, E. (2004) · Molecular Ecology · doi:10.1046/j.1365-294x.2004.02077.x · Cited by 132
Invertebrate population genetics across Earth's largest habitat: The deep‐sea floor
Taylor, M. L., & Roterman, C. N. (2017) · Molecular Ecology · doi:10.1111/mec.14237 · Cited by 130
A Unique Recent Origin of the Allotetraploid Species Arabidopsis suecica: Evidence from Nuclear DNA Markers
Jakobsson, M., Hagenblad, J., Tavaré, S., Säll, T., Halldén, C., Lind‐Halldén, C., & Nordborg, M. (2006) · Molecular Biology and Evolution · doi:10.1093/molbev/msk006 · Cited by 129
Trans‐species shared polymorphisms at orthologous nuclear gene loci among distant species in the conifer Picea (Pinaceae): implications for the long‐term maintenance of genetic diversity in trees
Bouillé, M., & Bousquet, J. (2005) · American Journal of Botany · doi:10.3732/ajb.92.1.63 · Cited by 128
Molecular Tracing of the Global Hepatitis C Virus Epidemic Predicts Regional Patterns of Hepatocellular Carcinoma Mortality
Tanaka, Y., Kurbanov, F., Mano, S., Orito, E., Vargas, V., Esteban, J. I., Yuen, M., Lai, C., Kramvis, A., Kew, M. C., et al. (2006) · Gastroenterology · doi:10.1053/j.gastro.2006.01.032 · Cited by 128
Genetic signatures of intermediate divergence: population history of Old and New World Holarctic ravens (Corvus corax)
Omland, K. E., Baker, J. M., & Peters, J. L. (2006) · Molecular Ecology · doi:10.1111/j.1365-294x.2005.02827.x · Cited by 125
Genome-wide DNA polymorphism analyses using VariScan
Hütter, S., Vilella, A. J., & Rozas, J. (2006) · BMC Bioinformatics · doi:10.1186/1471-2105-7-409 · Cited by 128
Hybrid Origins and Homoploid Reticulate Evolution within Heliosperma (Sileneae, Caryophyllaceae)—A Multigene Phylogenetic Approach with Relative Dating
Frajman, B., Eggens, F., & Oxelman, B. (2009) · Systematic Biology · doi:10.1093/sysbio/syp030 · Cited by 125
Phylogeographic information systems: putting the geography into phylogeography
Kidd, D. M., & Ritchie, M. G. (2006) · Journal of Biogeography · doi:10.1111/j.1365-2699.2006.01574.x · Cited by 123
The genome of the vervet (Chlorocebus aethiops sabaeus)
Warren, W. C., Jasinska, A. J., García-Pérez, R., Svardal, H., Tomlinson, C., Rocchi, M., Archidiacono, N., Capozzi, O., Minx, P., Montague, M. J., et al. (2015) · Genome Research · doi:10.1101/gr.192922.115 · Cited by 123
Rigorous approaches to species delimitation have significant implications for African crocodilian systematics and conservation
Shirley, M. H., Vliet, K. A., Carr, A. N., & Austin, J. D. (2013) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2013.2483 · Cited by 118
A reference cell tree will serve science better than a reference cell atlas
Domcke, S., & Shendure, J. (2023) · Cell · doi:10.1016/j.cell.2023.02.016 · Cited by 113
Integrating ensemble species distribution modelling and statistical phylogeography to inform projections of climate change impacts on species distributions
Forester, B. R., DeChaine, E. G., & Bunn, A. G. (2013) · Diversity and Distributions · doi:10.1111/ddi.12098 · Cited by 114
A MULTILOCUS PERSPECTIVE ON REFUGIAL ISOLATION AND DIVERGENCE IN RAINFOREST SKINKS (CARLIA)
Dolman, G., & Moritz, C. C. (2006) · Evolution · doi:10.1111/j.0014-3820.2006.tb01138.x · Cited by 112
Catecholamine Release–Inhibitory Peptide Catestatin (Chromogranin A 352–372 )
Rao, F., Wen, G., Gayen, J. R., Das, M., Vaingankar, S. M., Rana, B. K., Mahata, M., Kennedy, B. P., Salem, R. M., Stridsberg, M., et al. (2007) · Circulation · doi:10.1161/circulationaha.106.628859 · Cited by 112
Whole genome resequencing of the human parasite Schistosoma mansoni reveals population history and effects of selection
Crellen, T., Allan, F., David, S., Durrant, C., Huckvale, T., Holroyd, N. E., Emery, A. M., Rollinson, D., Aanensen, D. M., Berriman, M., et al. (2016) · Scientific Reports · doi:10.1038/srep20954 · Cited by 116
Evolutionary processes in a continental island system: molecular phylogeography of the AegeanNigella arvensisalliance (Ranunculaceae) inferred from chloroplast DNA
Bittkau, C., & Comes, H. P. (2005) · Molecular Ecology · doi:10.1111/j.1365-294x.2005.02725.x · Cited by 111
Evolution and Population Genetics of Exotic and Re-Emerging Pathogens: Novel Tools and Approaches
Grünwald, N. J., & Goss, E. M. (2011) · Annual Review of Phytopathology · doi:10.1146/annurev-phyto-072910-095246 · Cited by 110

Authors: Rosenberg, N. A., & Nordborg, M.
Affiliations: University of Southern California (US)
Corresponding author: Nordborg, Magnus
ORCID: Rosenberg, Noah A.
Nordborg, Magnus
Venue: Nature Reviews Genetics
Publisher: Springer Science and Business Media LLC
Published: 2002-05
Volume: 3
Issue: 5
Pages: 380-390
ISSN: 1471-0056 (ISSN-L)
1471-0064
DOI: 10.1038/nrg795
OpenAlex: W2114058116
Cited by: 750
References: 110
Citations by year: 2026: 6 · 2025: 6 · 2024: 15 · 2023: 19 · 2022: 50 · 2021: 24 · 2020: 23 · 2019: 33 · 2018: 60 · 2017: 41 · 2016: 33 · 2015: 31 · 2014: 49 · 2013: 32 · 2012: 33
FWCI: 3.02
Type: journal article
Language: en
Open access: closed
Licence: www.springer.com/tdm (tdm)
Locations: Nature Reviews Genetics (publishedVersion)
PubMed (publishedVersion)
Topics: Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic diversity and population structure
Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Forensic and Genetic Research
Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Evolution and Genetic Dynamics
Keywords: genealogical trees, coalescent theory, genetic polymorphism, population genetics, migration, natural selection, genotyping, stochastic processes, evolutionary history
MeSH terms: Animals, Genetics, Population, Humans, Pedigree, Polymorphism, Genetic, Recombination, Genetic, Stochastic Processes, Evolution, Molecular

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

Genealogical trees, coalescent theory and the analysis of genetic polymorphisms

Abstract

Overview

Integrity signals

Verification

Claims the paper makes

Claims other papers make about this one

Citations

Cites

Cited by

Related

Metadata

Record

About these checks