Metabolic cycles as an underlying basis of biological oscillations.
DOI 10.1038/nrm1980
Cited by (229)
Items 101–200 of 229
- Effect of Resveratrol, a SIRT1 Activator, on the Interactions of the CLOCK/BMAL1 ComplexInsung Park, Yool Lee, Hee-Dae Kim, Kyungjin Kim · 2014 · Endocrinology and Metabolism
- Approaching the molecular origins of collective dynamics in oscillating cell populationsPankaj Mehta, Thomas Gregor · 2010 · Current Opinion in Genetics & Development
- Division enzyme regulates metabolismAbigail S. Krall, Heather R. Christofk · 2017 · Nature
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- Metabolic rhythms: A framework for coordinating cellular functionHelen C. Causton · 2018 · European Journal of Neuroscience
- The respiratory oscillation in yeast phase definitions and periodicityDouglas B. Murray · 2006 · Nature Reviews Molecular Cell Biology
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- Exploring the Dynamics of Large-Scale Biochemical Networks: A Computational PerspectiveRalf Steuer · 2011 · The Open Bioinformatics Journal
- A Conserved Structural Signature of the Homeobox Coding DNA in HOX genesBernard Fongang, Fanping Kong, Surendra S. Negi, Werner A. Braun, Andrzej S. Kudlicki · 2016 · Scientific Reports
- The Mammalian Circadian Timekeeping SystemUeli Schibler · 2008 · Springer eBooks
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- The emergence of feedforward periodicity for the fed-batch penicillin fermentation processChi Zhai, Tong Qiu, Ahmet Palazoğlu, Wei Hua Sun · 2018 · IFAC-PapersOnLine
- Origins of the Embryo: Self-organization through cybernetic regulationRobert Stone, Tom Portegys, George E. Mikhailovsky, Bradly Alicea · 2018 · Biosystems
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- Reverse genetic screening during L1 arrest reveals a role of the diacylglycerol kinase 1 gene dgk-1 and sphingolipid metabolism genes in sleep regulationAnastasios Koutsoumparis, Inka Busack, Chung‐Kuan Chen, Yu Hayashi, Bart P. Braeckman, David Meierhofer, Henrik Bringmann · 2023 · Genetics
- The circadian rhythm regulates branched-chain amino acids metabolism in fast muscle of Chinese perch (Siniperca chuatsi) during short-term fasting by Clock-KLF15-Bcat2 pathwayXinxia Zhu, Jingjie Liu, Minglang Cai, Lingsheng Bao, Ya‐Xiong Pan, Ping Wu, Wuying Chu, Jianshe Zhang · 2022 · British Journal Of Nutrition
- Multi‐equilibrium property of metabolic networks: Exclusion of multi‐stability for SSN metabolic modulesHongbo Lei, Ji‐Feng Zhang, Luonan Chen · 2011 · International Journal of Robust and Nonlinear Control
- The effects of different light–dark cycles on the metabolism of the diazotrophic, unicellular cyanobacteria C yanothece sp. ATCC 51142, and C yanothecesp. PCC 7822Sarah Arshad, Sujata R. Mishra, Louis A. Sherman · 2014 · Journal of Phycology
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- Extracellular metabolite dynamics and temporal organization of metabolic function in E. coliMartin Robert, Douglas B. Murray, Masayuki Honma, Kenji Nakahigashi, Tomoyoshi Soga, Masaru Tomita · 2012 · ICME International Conference on Complex Medical Engineering (CME)
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- Saccharomyces cerevisiae: Oscillatory Orchestration of GrowthDavid Lloyd · 2019 · Springer eBooks
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- High glucose, no cryJoseph T. Bass · 2010 · Nature Medicine
- Synchronous protein cycling in batch cultures of the yeast Saccharomyces cerevisiae at log growth phaseGabriele Romagnoli, Enrico Cundari, Rodolfo Negri, Marco Crescenzi, Lorenzo Farina, Alessandro Giuliani, Michele Maria Bianchi · 2011 · Experimental Cell Research
- Dull plots, pale colors early in the morningTimo Partonen · 2013 · Annals of Medicine
- Energy-Metabolism Oscillation in the Living Organisms with Circadian RhythmsKunio Tsurugi · 2007 · Institutional Repositories DataBase (IRDB)
- Nuclear receptors: at the heart of the biological crosstalk between metabolism and circadian rhythmVincent Laudet · 2008 · Expert Review of Endocrinology & Metabolism
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- Comparative ClocksMartha W. Merrow, David Lenssen, Till Roenneberg · 2009 · Springer eBooks
- Extensive Regulation of Metabolism and Growth during the Cell Division CycleNikolai Slavov, David Botstein, Amy A. Caudy · 2014 · bioRxiv (Cold Spring Harbor Laboratory)
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