Explaining Microbial Population Genomics through Phage Predation

Cited by (666)

Items 101–200 of 666

1. Diversity and Ecology of Viruses in Hyperarid Desert Soils
   Olivier Zablocki, Evelien M. Adriaenssens, Don Arthur Cowan · 2015 · Applied and Environmental Microbiology
2. Comparative Metagenomics of Toxic Freshwater Cyanobacteria Bloom Communities on Two Continents
   Morgan M. Steffen, Zhou Li, T. Chad Effler, Loren Hauser, Gregory L. Boyer, Steven W. Wilhelm · 2012 · PLoS ONE
3. A Phage Protein Aids Bacterial Symbionts in Eukaryote Immune Evasion
   Martin Thomas Jahn, Ksenia Arkhipova, Sebastian M. Markert, Christian Stigloher, Tim Lachnit, Lucía Pita, Anne Kupczok, Marta Ribes, Stephanie T. Stengel, Philip C Rosenstiel et al. · 2019 · Cell Host & Microbe
4. Phage–bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome
   Margret E. Berg Miller, Carl J. Yeoman, Nicholas Chia, Susannah Green Tringe, Florent E. Angly, Robert Alan Edwards, Harry James Flint, Raphael Lamed, Edward A. Bayer, Bryan A. White · 2011 · Environmental Microbiology
5. Seeker: alignment-free identification of bacteriophage genomes by deep learning
   Noam Auslander, Ayal B. Gussow, Sean Benler, Yuri I. Wolf, Eugene V. Koonin · 2020 · Nucleic Acids Research
6. Genome of a SAR116 bacteriophage shows the prevalence of this phage type in the oceans
   Ilnam Kang, Hyun‐Myung Oh, Dongmin Kang, Jang‐Cheon Cho · 2013 · Proceedings of the National Academy of Sciences
7. Defining the human gut host–phage network through single-cell viral tagging
   Mária Džunková, Soo Jen Low, Joshua N. Daly, Li Deng, Christian Rinke, Philip Hugenholtz · 2019 · Nature Microbiology
8. Culturomics and pyrosequencing evidence of the reduction in gut microbiota diversity in patients with broad-spectrum antibiotics
   Grégory Dubourg, Jean‐Christophe Lagier, Catherine Robert, Fabrice Armougom, Perrine Hugon, Sarah Metidji, Niokhor Dione, Nicole Prisca Makaya Dangui Nieko, Anne Pfleiderer, Jônatas Santos Abrahão et al. · 2014 · International Journal of Antimicrobial Agents
9. The Bacterial Microbiome and Virome Milestones of Infant Development
   Efrem S. Lim, David Wang, Lori R. Holtz · 2016 · Trends in Microbiology
10. Metagenomics: microbial diversity through a scratched lens
    Ben Temperton, Stephen J. Giovannoni · 2012 · Current Opinion in Microbiology
11. Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype
    J. Cameron Thrash, Ben Temperton, Brandon K. Swan, Zachary Landry, Tanja Woyke, Edward F. DeLong, Ramūnas Stepanauskas, Stephan J. Giovannoni · 2014 · The ISME Journal
12. What Is Speciation?
    B. Jesse Shapiro, Jean‐Baptiste Leducq, James Mallet · 2016 · PLoS Genetics
13. Dietary energy drives the dynamic response of bovine rumen viral communities
    Christopher L. Anderson, Matthew B. Sullivan, Samodha C. Fernando · 2017 · Microbiome
14. The Santa Pola saltern as a model for studying the microbiota of hypersaline environments
    António Ventosa, Ana Beatriz Fernández, María José León, Cristina Sánchez‐Porro, Francisco Rodríguez‐Valera · 2014 · Extremophiles
15. High-throughput discovery of phage receptors using transposon insertion sequencing of bacteria
    Kaitlyn E. Kortright, Benjamin K. Chan, Paul E. Turner · 2020 · Proceedings of the National Academy of Sciences
16. Metagenome of the Mediterranean deep chlorophyll maximum studied by direct and fosmid library 454 pyrosequencing
    Rohit Ghai, Ana-Belén Martín-Cuadrado, Aitor Gonzaga, Inmaculada García-Heredia, Raúl Cabrera‐Rubio, Javier Escalada-San Martín, Miguel Verdú, Philippe Deschamps, David Moreira, Purificación López‐García et al. · 2010 · The ISME Journal
17. Population cycles and species diversity in dynamic Kill-the-Winner model of microbial ecosystems
    Sergei Maslov, Kim Sneppen · 2017 · Scientific Reports
18. Functional implications of the microbial community structure of undefined mesophilic starter cultures
    Smid, Eddy J, Erkus, Oylum, Spus, Maciej, Wolkers-Rooijackers, Judith CM, Alexeeva, Svetlana, Kleerebezem, Michiel · 2014 · Microbial Cell Factories
19. Gut microbiota and type 2 diabetes mellitus
    Araceli Muñoz‐Garach, Cristina María Díaz-Perdigones, Francisco José Tinahones · 2016 · Endocrinología y Nutrición (English Edition)
20. Metagenomic Approaches to Assess Bacteriophages in Various Environmental Niches
    Stephen Hayes, Jennifer Mahony, Arjen Nauta, Douwe van Sinderen · 2017 · Viruses
21. The impact of bacteriophages on phyllosphere bacterial abundance and composition
    Norma M. Morella, Annika L. Gomez, Grant Wang, Michelle S. Leung, Britt Louise Koskella · 2018 · Molecular Ecology
22. CRISPR Associated Diversity within a Population of Sulfolobus islandicus
    Nicole L. Held, Alfa Herrera, Hinsby Cadillo‐Quiroz, Rachel J. Whitaker · 2010 · PLoS ONE
23. Co-evolution with lytic phage selects for the mucoid phenotype of Pseudomonas fluorescens SBW25
    Pauline Deirdre Scanlan, Angus G. J. Buckling · 2011 · The ISME Journal
24. The diversity and host interactions of Propionibacterium acnes bacteriophages on human skin
    Jared Liu, Riceley Yan, Qiao Zhong, Sam Ngo, Nathanael Joshua Bangayan, Lin Nguyen, Timothy Lui, Minghsun Liu, Marie Crisel B. Erfe, Noah A. Craft et al. · 2015 · The ISME Journal
25. Local Mobile Gene Pools Rapidly Cross Species Boundaries To Create Endemicity within Global Vibrio cholerae Populations
    Yan Boucher, Otto X. Cordero, Alison F. Takemura, Dana E. Hunt, Klaus Peter Schliep, Eric P Bapteste, Philippe Lopez, Cheryl L. Tarr, Martin F. Polz · 2011 · mBio
26. Phage-centric ecological interactions in aquatic ecosystems revealed through ultra-deep metagenomics
    Vinicius Kavagutti, Adrian‐Ștefan Andrei, Maliheh Mehrshad, Michaela M. Salcher, Rohit Ghai · 2019 · Microbiome
27. Functional interactions of archaea, bacteria and viruses in a hypersaline endolithic community
    Alexander Crits‐Christoph, Diego R. Gelsinger, Bing Ma, Jacek Wierzchoś, Jacques Ravel, Alfonso F. Dávila, María Cristina Casero, Jocelyne DiRuggiero · 2016 · Environmental Microbiology
28. Metagenomic analysis of intestinal mucosa revealed a specific eukaryotic gut virome signature in early-diagnosed inflammatory bowel disease
    Federica Ungaro, Luca Massimino, Federica Furfaro, Valeria Rimoldi, Laurent Peyrin‐Biroulet, Silvia D’Alessio, Silvio Danese · 2018 · Gut Microbes
29. Beyond 16S rRNA Community Profiling: Intra-Species Diversity in the Gut Microbiota
    Kirsten Ellegaard, Philipp Engel · 2016 · Frontiers in Microbiology
30. Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time
    David T. Pride, Christine L Sun, Julia Salzman, Nitya Rao, Peter Michael Loomer, Gary C. Armitage, Jillian F. Banfield, David A. Relman · 2010 · Genome Research
31. Gut virome profiling identifies a widespread bacteriophage family associated with metabolic syndrome
    Patrick A. de Jonge, Koen Wortelboer, Torsten P. M. Scheithauer, Bert‐Jan H. van den Born, Aeilko H. Zwinderman, Franklin L. Nóbrega, Bas E. Dutilh, Max Nieuwdorp, Hilde Herrema · 2022 · Nature Communications
32. Cystic Fibrosis Therapy: A Community Ecology Perspective
    Douglas Conrad, Matthew R. Haynes, Peter Salamon, Paul B. Rainey, Merry Youle, Forest L. Rohwer · 2013 · American Journal of Respiratory Cell and Molecular Biology
33. Stabilization of extensive fine-scale diversity by ecologically driven spatiotemporal chaos
    Michael T. Pearce, Atish Agarwala, Daniel S. Fisher · 2020 · Proceedings of the National Academy of Sciences
34. Plasmid-Mediated Transfer of Antibiotic Resistance Genes in Soil
    Miaoling Meng, Yaying Li, Huaiying Yao · 2022 · Antibiotics
35. Amoebae as Genitors and Reservoirs of Giant Viruses
    Didier Raoult, Mickaël Boyer · 2010 · Intervirology
36. Phage Life Cycles Behind Bacterial Biodiversity
    Tomasz Olszak, Agnieszka Łątka, Bartosz Roszniowski, Miguel A. Valvano, Zuzanna Drulis‐Kawa · 2017 · Current Medicinal Chemistry
37. Dynamic Viral Populations in Hypersaline Systems as Revealed by Metagenomic Assembly
    Joanne Emerson, Brian C. Thomas, Karen Andrade, Eric E. Allen, Karla B. Heidelberg, Jillian F. Banfield · 2012 · Applied and Environmental Microbiology
38. Individuals at Risk for Developing Rheumatoid Arthritis Harbor Differential Intestinal Bacteriophage Communities with Distinct Metabolic Potential
    Mihnea R. Mangalea, David Páez-Espino, Kristopher Kieft, Anushila Chatterjee, Meagan E. Chriswell, Jennifer A. Seifert, Marie L. Feser, Mary Kristen Demoruelle, Alexandra Sakatos, Karthik Anantharaman et al. · 2021 · Cell Host & Microbe
39. Microbial taxonomy in the post-genomic era: Rebuilding from scratch?
    Cristiane Carneiro Thompson, Gilda Rose S. Amaral, Mariana E. Campeão, Robert Alan Edwards, Martin F. Polz, Bas E. Dutilh, David Wayne Ussery, Tomoo Sawabe, Jean Swings, Fabiano Lopes Thompson · 2014 · Archives of Microbiology
40. The gut microbiome in Parkinson's disease: A culprit or a bystander?
    Ali Keshavarzian, Phillip A. Engen, Salvatore Bonvegna, Roberto Cilia · 2020 · Progress in brain research
41. Assembly-Driven Community Genomics of a Hypersaline Microbial Ecosystem
    Sheila B. Podell, Juan Antonio Ugalde, Priya Narasingarao, Jillian F. Banfield, Karla B. Heidelberg, Eric E. Allen · 2013 · PLoS ONE
42. MetaHiC phage-bacteria infection network reveals active cycling phages of the healthy human gut
    Martial Marbouty, Agnès Thierry, Gaël A. Millot, Romain Koszul · 2021 · eLife
43. Towards predicting the environmental metabolome from metagenomics with a mechanistic model
    Daniel Rios Garza, Marcel C. Van Verk, Martijn A. Huynen, Bas E. Dutilh · 2018 · Nature Microbiology
44. Reconstructing Viral Genomes from the Environment Using Fosmid Clones: The Case of Haloviruses
    Inmaculada García-Heredia, Ana-Belén Martín-Cuadrado, Francisco J. M. Mojica, Fernando de Almeida Santos, Álex Mira, Josefa Antón, Francisco Rodríguez‐Valera · 2012 · PLoS ONE
45. Mechanisms of Multi-strain Coexistence in Host-Phage Systems with Nested Infection Networks
    Luis F. Jover, Michael H. Cortez, Joshua S. Weitz · 2016
46. Microbial Colonization From the Fetus to Early Childhood—A Comprehensive Review
    Viola Senn, Dirk Bassler, Rashikh A. Choudhury, Felix Scholkmann, Franziska Righini‐Grunder, Raphael Nicolas Vuille-dit-Bille, Tanja Restin · 2020 · Frontiers in Cellular and Infection Microbiology
47. A single-cell polony method reveals low levels of infected Prochlorococcus in oligotrophic waters despite high cyanophage abundances
    Noor Mruwat, Michael C G Carlson, Svetlana Goldin, François Ribalet, Shay Kirzner, Yotam Hulata, Stephen J. Beckett, Dror Shitrit, Joshua S. Weitz, E. Virginia Armbrust et al. · 2020 · The ISME Journal
48. Phage-mediated Dispersal of Biofilm and Distribution of Bacterial Virulence Genes Is Induced by Quorum Sensing
    Friederike S. Rossmann, Tomas Racek, Dominique Wobser, Jacek Puchałka, Elaine M. Rabener, Matthias Reiger, Antoni P. A. Hendrickx, Ann-Kristin Diederich, Kirsten Jung, Christoph Klein et al. · 2015 · PLoS Pathogens
49. New insights into marine group III Euryarchaeota, from dark to light
    Jose Manuel Haro-Moreno, Francisco Rodríguez‐Valera, Purificación López‐García, David Moreira, Ana-Belén Martín-Cuadrado · 2017 · The ISME Journal
50. Flexible genomic islands as drivers of genome evolution
    Francisco Rodríguez‐Valera, Ana-Belén Martín-Cuadrado, Mario López‐Pérez · 2016 · Current Opinion in Microbiology
51. Ability of phages to infect Acinetobacter calcoaceticus‐Acinetobacter baumannii complex species through acquisition of different pectate lyase depolymerase domains
    Hugo Oliveira, Ana Rita Costa, Nico Konstantinides, Alice Ferreira, Ergun Akturk, Sanna Sillankorva, Alexandr Nemec, Mikhail M. Shneider, Andreas Dötsch, Joana Azeredo · 2017 · Environmental Microbiology
52. A new class of marine Euryarchaeota group II from the mediterranean deep chlorophyll maximum
    Ana-Belén Martín-Cuadrado, Inmaculada García-Heredia, Aitor Gonzaga, Rebeca López-Úbeda, Nikole E. Kimes, Purificación López‐García, David Moreira, Francisco Rodríguez‐Valera · 2014 · The ISME Journal
53. Evolution of viruses and cells: do we need a fourth domain of life to explain the origin of eukaryotes?
    David Moreira, Purificación López‐García · 2015 · Philosophical Transactions of the Royal Society B Biological Sciences
54. Coevolutionary diversification creates nested-modular structure in phage–bacteria interaction networks
    Stephen J. Beckett, Hywel T. P. Williams · 2013 · Interface Focus
55. The Gut Microbiota in Inflammatory Bowel Disease
    Donal Sheehan, Fergus Shanahan · 2017 · Gastroenterology Clinics of North America
56. Genome diversity of marine phages recovered from Mediterranean metagenomes: Size matters
    Mario López‐Pérez, Jose Manuel Haro-Moreno, Rafael Gonzalez-Serrano, Marcos Parras-Moltó, Francisco Rodríguez‐Valera · 2017 · PLoS Genetics
57. Novel integrative elements and genomic plasticity in ocean ecosystems
    Thomas Hackl, Raphaël Laurenceau, Markus Johannes Ankenbrand, Christina Bliem, Zev Cariani, Elaina Thomas, Keven D. Dooley, Aldo A. Arellano, Shane Hogle, Paul M. Berube et al. · 2023 · Cell
58. The metavirome of a hypersaline environment
    Fernando Santos, Pablo Yarza, Vı́ctor Parro, Carlos Briones, Josefa Antón · 2010 · Environmental Microbiology
59. Virus-host swinging party in the oceans
    Sarit Avrani, Daniel A. Schwartz, Debbie Lindell · 2012 · Mobile Genetic Elements
60. Microbial Speciation
    B. Jesse Shapiro, Martin F. Polz · 2015 · Cold Spring Harbor Perspectives in Biology
61. Evolution of Salmonella enterica serotype Typhimurium driven by anthropogenic selection and niche adaptation
    Matt Bawn, Nabil-Fareed Alikhan, Gaetan J. A. Thilliez, Mark Kirkwood, Nicole E. Wheeler, Liljana Petrovska, Timothy J. Dallman, Evelien M. Adriaenssens, Neil Hall, Robert A. Kingsley · 2020 · PLoS Genetics
62. Resistance in marine cyanobacteria differs against specialist and generalist cyanophages
    Sophia Zborowsky, Debbie Lindell · 2019 · Proceedings of the National Academy of Sciences
63. Evolutionary engineering to enhance starter culture performance in food fermentations
    Herwig Bachmann, Jack T. Pronk, Michiel Kleerebezem, Bas Teusink · 2014 · Current Opinion in Biotechnology
64. Bacteriophages as twenty-first century antibacterial tools for food and medicine
    Damien Maura, Laurent Debarbieux · 2011 · Applied Microbiology and Biotechnology
65. Well-temperate phage: optimal bet-hedging against local environmental collapses
    Sergei Maslov, Kim Sneppen · 2015 · Scientific Reports
66. Marine-freshwater prokaryotic transitions require extensive changes in the predicted proteome
    Pedro J. Cabello‐Yeves, Francisco Rodríguez‐Valera · 2019 · Microbiome
67. Genome Sequencing Reveals a Phage in Helicobacter pylori
    Philippe Lehours, Filipa F. Vale, Magnus K. Bjursell, Öjar Melefors, Reza Advani, Steve Glavas, Julia Guéguéniat, Étienne Gontier, Sabrina Lacomme, António Matos et al. · 2011 · mBio
68. Coevolution Maintains Diversity in the Stochastic “Kill the Winner” Model
    Chi Xue, Nigel D. Goldenfeld · 2017 · Physical Review Letters
69. Quantifying the Importance of the Rare Biosphere for Microbial Community Response to Organic Pollutants in a Freshwater Ecosystem
    Yuanqi Wang, Janet K. Hatt, Despina Tsementzi, Luis M. Rodriguez‐R, Carlos A. Ruiz-Pérez, Michael R. Weigand, Heidi Kizer, Gina Maresca, Raj Krishnan, Rachel Susan Poretsky et al. · 2017 · Applied and Environmental Microbiology
70. Human Virome
    Selene Zárate, Blanca Taboada, Martha Yocupicio‐Monroy, Carlos Federico Arias · 2017 · Archives of Medical Research
71. Culture-Independent Approaches for Studying Viruses from Hypersaline Environments
    Fernando Santos, Pablo Yarza, Vı́ctor Parro, Inmaculada Meseguer, Ramon A. Rossello-Mora, Josefa Antón · 2012 · Applied and Environmental Microbiology
72. Single-cell genomics reveal low recombination frequencies in freshwater bacteria of the SAR11 clade
    Katarzyna Zaremba-Niedźwiedzka, Johan Viklund, Weizhou Zhao, Jennifer C. Ast, Alexander Sczyrba, Tanja Woyke, Katherine D. McMahon, Stefan Bertilsson, Ramūnas Stepanauskas, Siv G. E. Andersson · 2013 · Genome biology
73. Prophages of the genus B ifidobacterium as modulating agents of the infant gut microbiota
    Gabriele Andrea Lugli, Christian Milani, Francesca Turroni, Denise M. Tremblay, Chiara Ferrario, Leonardo Mancabelli, Sabrina Duranti, Doyle V. Ward, Maria Cristina Ossiprandi, Sylvain Moineau et al. · 2015 · Environmental Microbiology
74. Rarity in aquatic microbes: placing protists on the map
    Ramiro Logares, Jean‐François Mangot, Ramón Massana · 2015 · Research in Microbiology
75. Are low temperature habitats hot spots of microbial evolution driven by viruses?
    Alexandre Magno Anesio, Christopher M. Bellas · 2010 · Trends in Microbiology
76. Novel Synechococcus Genomes Reconstructed from Freshwater Reservoirs
    Pedro J. Cabello‐Yeves, Jose Manuel Haro-Moreno, Ana-Belén Martín-Cuadrado, Rohit Ghai, Antonio Picazo, Antonio Camacho, Francisco Rodríguez‐Valera · 2017 · Frontiers in Microbiology
77. The cost of phage resistance in a plant pathogenic bacterium is context‐dependent
    Sean Meaden, Konrad H. Paszkiewicz, Britt Louise Koskella · 2015 · Evolution
78. Effects of environmental variation and spatial distance on Bacteria, Archaea and viruses in sub-polar and arctic waters
    Christian Winter, Blake Matthews, Curtis A. Suttle · 2013 · The ISME Journal
79. Phage-induced diversification improves host evolvability
    Hywel T. P. Williams · 2013 · BMC Evolutionary Biology
80. Oxygen minimum zones harbour novel viral communities with low diversity
    Noriko A. Cassman, Alejandra Prieto‐Davó, Kevin Walsh, Amaro Emiliano Trindade Silva, Florent E. Angly, Sajia Akhter, Katie L. Barott, Julia Busch, Tracey McDole Somera, John Matthew Haggerty et al. · 2012 · Environmental Microbiology
81. Pangenome Evolution in the Marine BacteriumAlteromonas
    Mario López‐Pérez, Francisco Rodríguez‐Valera · 2016 · Genome Biology and Evolution
82. Recent mixing of Vibrio parahaemolyticus populations
    Chao Yang, Xiaoyan Pei, Yarong Wu, Yan Lin, Yanfeng Yan, Yuqin Song, Nicola M. Coyle, Jaime Martínez-Urtaza, Christopher Quince, Qinghua Hu et al. · 2019 · The ISME Journal
83. Recombinant transfer in the basic genome of Escherichia coli
    Purushottam D. Dixit, Tin Yau Pang, F. William Studier, Sergei Maslov · 2015 · Proceedings of the National Academy of Sciences
84. Bacteriophages in sewage: abundance, roles, and applications
    Elisenda Ballesté, Anicet R. Blanch, Maite Muniesa, Cristina García‐Aljaro, Lorena Rodríguez‐Rubio, Julia Martín-Díaz, Míriam Pascual-Benito, Juan T. Jofre · 2022 · FEMS Microbes
85. Insights into the dynamics between viruses and their hosts in a hot spring microbial mat
    Jessica K. Jarett, Mária Džunková, Frederik Schulz, Simon Roux, David Páez-Espino, Emiley A. Eloe‐Fadrosh, Sean P. Jungbluth, Natalia Ivanova, John R. Spear, Stephanie Carr et al. · 2020 · The ISME Journal
86. Evolutionary Strategies of Viruses, Bacteria and Archaea in Hydrothermal Vent Ecosystems Revealed through Metagenomics
    Rika E. Anderson, Mitchell L. Sogin, John A. Baross · 2014 · PLoS ONE
87. Bacteria-Phage Interactions across Time and Space: Merging Local Adaptation and Time-Shift Experiments to Understand Phage Evolution
    Britt Louise Koskella · 2014 · The American Naturalist
88. Abundance, diversity and seasonal dynamics of predatory bacteria in aquaculture zero discharge systems
    Prem P. Kandel, Zohar Pasternak, Jaap van Rijn, Ortal Nahum, Édouard Jurkevitch · 2014 · FEMS Microbiology Ecology
89. Microbial bioinformatics for food safety and production
    Wynand B. L. Alkema, Jos Boekhorst, Michiel Wels, Sacha A. F. T. van Hijum · 2015 · Briefings in Bioinformatics
90. Flexible genes establish widespread bacteriophage pan-genomes in cryoconite hole ecosystems
    Christopher M. Bellas, Declan C. Schroeder, Arwyn Edwards, Gary Barker, Alexandre Magno Anesio · 2020 · Nature Communications
91. Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains
    Arantxa Peña, Hanno Teeling, Jaime Huerta‐Cepas, Fernando Santos, Pablo Yarza, Jocelyn Brito-Echeverría, Marianna Lucio, Philippe Schmitt‐Kopplin, Inmaculada Meseguer, Chantal Schenowitz et al. · 2010 · The ISME Journal
92. RNA Phage Biology in a Metagenomic Era
    Julie Callanan, Stephen R. Stockdale, Andrey Nikolaevich Shkoporov, Lorraine A. Draper, R. Paul Ross, Colin Hill · 2018 · Viruses
93. Hypersaline environments as natural sources of microbes with potential applications in biotechnology: The case of solar evaporation systems to produce salt in Alicante County (Spain).
    Guillermo Martínez Martínez, Carmen Pire, Rosa María Martínez‐Espinosa · 2022 · Current Research in Microbial Sciences
94. Architecture and Gene Repertoire of the Flexible Genome of the Extreme Acidophile Acidithiobacillus caldus
    Lillian G. Acuña, Juan Pablo Cárdenas, Paulo C. Covarrubias, Juan José Haristoy, Rodrigo Flores, Harold Núñez, Gonzalo Riadi, Amir Shmaryahu, Jorge Valdés, Mark Dopson et al. · 2013 · PLoS ONE
95. Metagenome-derived virus-microbe ratios across ecosystems
    Purificación López‐García, Ana Gutiérrez‐Preciado, Mart Krupovìč, Maria Ciobanu, Philippe Deschamps, Ludwig E. Jardillier, Mario López‐Pérez, Francisco Rodríguez‐Valera, David Moreira · 2023 · The ISME Journal
96. Diverse antimicrobial interactions of halophilic archaea and bacteria extend over geographical distances and cross the domain barrier
    Nina S. Atanasova, Maija K. Pietilä, Hanna M. Oksanen · 2013 · MicrobiologyOpen
97. Effectiveness of bacteriophages in the sputum of cystic fibrosis patients
    Emilie Saussereau, Isabelle Vachier, R. Chiron, B. Godbert, Isabelle Sermet‐Gaudelus, Nicolas Dufour, Jean‐Paul Pirnay, Daniël De Vos, F. Carrié, Nicolas Molinari et al. · 2014 · Clinical Microbiology and Infection
98. The human oral phageome
    Szymon P. Szafrański, Jørgen Slots, Meike Stiesch · 2021 · Periodontology 2000
99. Viral Ancestors of Antiviral Systems
    Luis P. Villarreal · 2011 · Viruses
100. Population mixing promotes arms race host–parasite coevolution
     Pedro Gómez, Ben Ashby, Angus G. J. Buckling · 2014 · Proceedings of the Royal Society B Biological Sciences