Explaining Microbial Population Genomics through Phage Predation

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Items 401–500 of 666

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5. Insights on the bacterial composition of Parmigiano Reggiano Natural Whey Starter by a culture-dependent and 16S rRNA metabarcoding portrait
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6. Tradeoffs between phage resistance and nitrogen fixation drive the evolution of genes essential for cyanobacterial heterocyst functionality
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7. Genomic divergence and cohesion in a species of pelagic freshwater bacteria
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8. Cyanophages
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9. The interplay between tissue‐resident microbiome and host proteins by integrated multi‐omics during progression of colorectal adenoma to carcinoma
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10. Prevalence of Viral Frequency-Dependent Infection in Coastal Marine Prokaryotes Revealed Using Monthly Time Series Virome Analysis
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11. Pharmacometabolomics Informs Viromics toward Precision Medicine
    Angeliki Balasopoulou, George P. Patrinos, Θεοδώρα Κάτσιλα · 2016 · Frontiers in Pharmacology
12. Probing the ecological and evolutionary history of a thermophilic cyanobacterial population via statistical properties of its microdiversity
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13. Microbial Life in a Fjord: Metagenomic Analysis of a Microbial Mat in Chilean Patagonia
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14. Statistical Mechanics of Horizontal Gene Transfer in Evolutionary Ecology
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15. Viruses in Biology
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16. The Genus Prochlorococcus, Phylum Cyanobacteria
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17. Fractal Hypothesis of the Pelagic Microbial Ecosystem—Can Simple Ecological Principles Lead to Self-Similar Complexity in the Pelagic Microbial Food Web?
    Selina Våge, Tron Frede Thingstad · 2015 · Frontiers in Microbiology
18. Peering into the Genetic Makeup of Natural Microbial Populations Using Metagenomics
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19. Temporal dynamics of microbial transcription in wetted hyperarid desert soils
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20. Long-read powered viral metagenomics in the oligotrophic Sargasso Sea
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21. Geographic population structure and distinct intra-population dynamics of globally abundant freshwater bacteria
    Matthias Hoetzinger, Martin W. Hahn, Linnéa Y Andersson, Nathaniel Buckley, Chelsea Ramsin, Moritz Buck, Julia K. Nuy, Sarahi L. Garcia, Fernando Puente‐Sánchez, Stefan Bertilsson · 2024 · The ISME Journal
22. Bacterial perspectives on the dissemination of antibiotic resistance genes in domestic wastewater bio-treatment systems: beneficiary to victim
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23. Identifying and Analyzing Bacteriophages in Human Fecal Samples: What Could we Discover?
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24. Crystal ball – 2013
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25. Phage-Resistant Bacteria Reveal a Role for Potassium in Root Colonization
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26. Flexible genomic island conservation across freshwater and marine Methylophilaceae
    Paul Layoun, Mario López‐Pérez, Jose Manuel Haro-Moreno, Markus Haber, J. Cameron Thrash, Michael W. Henson, Vinicius Kavagutti, Rohit Ghai, Michaela M. Salcher · 2024 · The ISME Journal
27. The insights into the phage communities of fermented foods in the age of viral metagenomics
    Huadong Zhang, Hongxia Zhang, Hai Du, Xiao‐Wei Yu, Yan Xu · 2024 · Critical Reviews in Food Science and Nutrition
28. Exopolysaccharide production in Caulobacter crescentus: A resource allocation trade-off between protection and proliferation
    Kathryn L. Herr, Alexis M. Carey, Taylor I. Heckman, Jessenia Laki Chávez, Christina N. Johnson, Emily Harvey, William A. Gamroth, Bridget S. Wulfing, Rachel A. Van Kessel, Melissa E. Marks · 2018 · PLoS ONE
29. Unexpected Complexity at Salinity Saturation: Microbial Diversity of the North Arm of Great Salt Lake
    Swati Almeida-Dalmet, Bonnie K. Baxter · 2020 · Springer eBooks
30. Genes essential for the morphogenesis of the Shiga toxin 2-transducing phage from Escherichia coli O157:H7
    Shakhinur Islam Mondal, Md Rakibul Islam, Akira Sawaguchi, Md Asadulghani, Tadasuke Ooka, Yasuhiro Gotoh, Yasuhiro Kasahara, Yoshitoshi Ogura, Tetsuya Hayashi · 2016 · Scientific Reports
31. Phages indirectly maintain tomato plant pathogen defense through regulation of the commensal microbiome
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32. Marine Viruses and Their Role in Marine Ecosystems and Carbon Cycling
    Kristina D. A. Mojica, Corina P. D. Brussaard · 2025 · Annual Review of Marine Science
33. Phosphate-related genomic islands as drivers of environmental adaptation in the streamlined marine alphaproteobacterial HIMB59
    Carmen Molina-Pardines, Jose Manuel Haro-Moreno, Mario López‐Pérez · 2023 · mSystems
34. Genetic diversity of Microcystis cyanophages in two different freshwater environments
    Ginji Nakamura, Shigeko Kimura, Yoshihiko Sako, Takashi Yoshida · 2014 · Archives of Microbiology
35. Modeling the Winter–to–Summer Transition of Prokaryotic and Viral Abundance in the Arctic Ocean
    Christian Winter, Jérôme P. Payet, Curtis A. Suttle · 2012 · PLoS ONE
36. Can dynamic network modelling be used to identify adaptive microbiomes?
    Joshua Garcia, Jenny Kao‐Kniffin · 2019 · Functional Ecology
37. Effects of differences in organic supply on bacterial diversity subject to viral lysis
    Birte Töpper, Tron Frede Thingstad, Ruth‐Anne Sandaa · 2012 · FEMS Microbiology Ecology
38. Genetic determinism of phage-bacteria coevolution in natural populations
    Damien Piel, Maxime Bruto, Yannick Labreuche, François Blanquart, Sabine Chenivesse, Sophie Le Panse, Adèle James, Rubén Barcia‐Cruz, Javier Dubert, Bruno Petton et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
39. Biology of host-dependent restriction-modification in prokaryotes
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40. Phylogenomic Based Comparative Studies on Indian and American Commensal Staphylococcus epidermidis Isolates
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41. Persistence, loss and appearance of bacteria upstream and downstream of a river system
    Lisa M. Dann, Renee J. Smith, Thomas C. Jeffries, Jody C. McKerral, Peter G. Fairweather, Rod L. Oliver, James G. Mitchell · 2016 · Marine and Freshwater Research
42. Simulation of phage dynamics in multi-reactor models of complex wastewater treatment systems
    Konrad Krysiak-Baltyn, Gregory J.O. Martin, Anthony D. Stickland, Peter J. Scales, Sally Louise Gras · 2016 · Biochemical Engineering Journal
43. Phage Predation Shapes the Population Structure of Shiga-Toxigenic Escherichia coli O157:H7 in the UK: An Evolutionary Perspective
    Lauren A. Cowley, Timothy J. Dallman, Claire Jenkins, Samuel Keir Sheppard · 2019 · Frontiers in Genetics
44. Silent rain: does the atmosphere-mediated connectivity between microbiomes influence bacterial evolutionary rates?
    Matti Jalasvuori · 2020 · FEMS Microbiology Ecology
45. Extensive paralogism in the environmental pangenome: a key factor in the ecological success of natural SAR11 populations
    Carmen Molina-Pardines, Jose Manuel Haro-Moreno, Francisco Rodríguez‐Valera, Mario López‐Pérez · 2025 · Microbiome
46. Benchmarking protocols for the metagenomic analysis of stream biofilm viromes
    Meriem Bekliz, Jade Brandani, Massimo Bourquin, Tom J. Battin, Hannes Peter · 2019 · PeerJ
47. Mechanisms Generating Dichotomies in the Life Strategies of Heterotrophic Marine Prokaryotes
    Tron Frede Thingstad, Lise Øvreås, Ôlav Vadstein · 2022 · Diversity
48. New approaches to characterizing bacteria–phage interactions in microbial communities and microbiomes
    Britt Louise Koskella · 2018 · Environmental Microbiology Reports
49. Quantitative comparison of the RNA bacteriophage Qβ infection cycle in rich and minimal media
    Tomonori Inomata, Hitomi Kimura, Haruki Hayasaka, Akinori Shiozaki, Yasuhiro Fujita, Akiko Kashiwagi · 2012 · Archives of Virology
50. Freshwater genome-reduced bacteria exhibit pervasive episodes of adaptive stasis
    Lucas Serra Moncadas, Cyrill Hofer, Paul‐Adrian Bulzu, Jakob Pernthaler, Adrian‐Ștefan Andrei · 2024 · Nature Communications
51. Extremely halophilic brine community manipulation shows higher robustness of microbiomes inhabiting human-driven solar saltern than naturally driven lake
    Raquel Liébana, Tomeu Viver, María Dolores Ramos‐Barbero, Esteban Bustos-Caparros, Mercedes Urdiain, Cristina López, Mohammad Ali Amoozegar, Josefa Antón, Ramon A. Rossello-Mora · 2024 · mSystems
52. Impact of Phage Therapy on Pseudomonas syringae pv. syringae and Plant Microbiome Dynamics Through Coevolution and Field Experiments
    Matevž Rupar, Emily R. Grace, Naina Korotania, Maria Laura Ciusa, Robert Wilson Jackson, Mojgan Rabiey · 2025 · Environmental Microbiology
53. CRISPR-Cas Systems to Probe Ecological Diversity and Host–Viral Interactions
    Nicole L. Held, Lauren M. Childs, Michelle R. Davison, Joshua S. Weitz, Rachel J. Whitaker, Devaki Bhaya · 2012 · Springer eBooks
54. Corrected Genome Annotations Reveal Gene Loss and Antibiotic Resistance as Drivers in the Fitness Evolution of Salmonella enterica Serovar Typhimurium
    Sandip Paul, Evgeni V. Sokurenko, Sujay Chattopadhyay · 2016 · Journal of Bacteriology
55. The environment drives microbial trait variability in aquatic habitats
    Sara Beier, Anders F. Andersson, Pierre E. Galand, Corentin Hochart, Jürg Brendan Logue, Katherine D. McMahon, Stefan Bertilsson · 2020 · Molecular Ecology
56. Dynamics of Baltic Sea phages driven by environmental changes
    Matthias Hoetzinger, Emelie Nilsson, Rahaf Arabi, Christofer M. G. Osbeck, Benjamin Pontiller, Geoffrey Hutinet, Oliver W. Bayfield, Sachia J. Traving, Veljo Kisand, Daniel Lundin et al. · 2021 · Environmental Microbiology
57. Strong selection and high mutation supply characterize experimentalChlorovirusevolution
    Cas Retel, Vienna Kowallik, Lutz Becks, Philine G. D. Feulner · 2022 · Virus Evolution
58. Marine Viruses
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59. Presence and Role of Prokaryotic Viruses in Groundwater Environments
    Johannes Sergej Schweichhart, Daniel Pleyer, Christian Winter, Alice Retter, Christian Griebler · 2021 · Elsevier eBooks
60. Respiratory processes of early-evolved hyperthermophiles in sulfidic and low-oxygen geothermal microbial communities
    Inskeep, William P., Jay, Zackary J., McKay, Luke J., Dlakić, Mensur · 2025 · Nature Communications
61. On the biological meaning of the population pangenome
    Francisco Rodríguez‐Valera, Carmen Molina-Pardines · 2025 · Trends in Microbiology
62. Lytic bacteriophages affect the population dynamics of multi-strain microbial communities
    M. Spus, Yohanes Raditya Wardhana, J.C.M. Wolkers-Rooijackers, Tjakko Abee, Eddy J. Smid · 2023 · Microbiome Research Reports
63. Distinct niche partitioning of marine and freshwater microbes during colonisation
    Lisa M. Dann, Michelle Clanahan, James S. Paterson, James G. Mitchell · 2019 · FEMS Microbiology Ecology
64. The worm affair: fidelity and environmental adaptation in symbiont species that co‐occur in vestimentiferan tubeworms
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65. Genomic Characterization of Imipenem- and Imipenem-Relebactam-Resistant Clinical Isolates of Pseudomonas aeruginosa
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66. Membrane-like protein involved in phage adsorption associated with phage-sensitivity in the bloom-forming cyanobacterium Microcystis aeruginosa
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67. Dynamic changes occur in the DNA gut virome of female cynomolgus macaques during aging
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68. Crystal ball – 2011
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69. Elucidation of molecular function of phage protein responsible for optimization of host cell lysis
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70. The Ability of Bacteriophages to Reduce Biofilms Produced by Pseudomonas aeruginosa Isolated from Corneal Infections
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71. Phage diversity mirrors bacterial strain diversity in the honey bee gut microbiota
    Malick Ndiaye, Germán Bonilla‐Rosso, Florent Mazel, Philipp Engel · 2025 · Nature Communications
72. Inoviridae prophage and bacterial host dynamics during diversification, succession, and Atlantic invasion of Pacific-native Vibrio parahaemolyticus
    Randi L. Foxall, Jillian Means, Ashely L. Marcinkiewicz, Christopher Schillaci, Kristin DeRosia-Banick, Feng Xu, Jeffrey A. Hall, Stephen H. Jones, Vaughn S. Cooper, Cheryl A. Whistler · 2023 · mBio
73. Diversity Waves in Collapse-Driven Population Dynamics
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74. A Reverse Ecology Framework for Bacteria and Archaea
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75. Isolation and Characterization of a Novel Lytic Halotolerant Phage from Yuncheng Saline Lake
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76. Stabilization of extensive fine-scale diversity by spatio-temporal chaos
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77. Long read metagenomics, the next step?
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78. Metagenome-based characterization of the gut bacteriome, mycobiome, and virome in patients with chronic hepatitis B-related liver fibrosis
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81. Host species and geographic location shape microbial diversity and functional potential in the conifer needle microbiome
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82. A size structured model for bacteria–phages interaction
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83. The effect of intrinsic factors and mechanisms in shaping human gut microbiota
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84. Novel virulent and temperate cyanophages predicted to infect Microcoleus associated with anatoxin‐producing benthic mats
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85. Large diversity in the O-chain biosynthetic cluster within populations of Pelagibacterales
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86. The underlying process of early ecological and genetic differentiation in a facultative mutualistic Sinorhizobium meliloti population
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87. A microbial perspective on speciation
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88. Complete characterization of new isolates of Neptunomonas phycophila leads to emend its description and opens possibilities of biotechnological applications
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89. Role of Phylogenetic Structure in the Dynamics of Coastal Viral Assemblages
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90. Is the pan-genome also a pan-selectome?
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91. Fine stratification of microbial communities through a metagenomic profile of the photic zone
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95. Impact of antibiotic perturbation on fecal viral communities in mice
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97. Coevolving parasites improve host evolutionary search on structured fitness landscapes
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98. The Diagnostic Potential & Interactive Dynamics of the Colorectal Cancer Virome
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99. Arctic Ocean virus communities and their seasonality, bipolarity, and prokaryotic associations
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100. Coliphages of the human urinary microbiota
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