Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges

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Items 101–200 of 400

1. The regulation properties of RNA secondary structure in alternative splicing
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4. RBFOX2 alters splicing outcome in distinct binding modes with multiple protein partners
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5. HydRA: Deep-learning models for predicting RNA-binding capacity from protein interaction association context and protein sequence
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6. Mobile genomics: tools and techniques for tackling transposons
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7. hnRNP A1/A2 and Sam68 collaborate with SRSF10 to control the alternative splicing response to oxaliplatin-mediated DNA damage
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8. Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death
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9. Aberrant splicing in Huntington’s disease accompanies disrupted TDP-43 activity and altered m6A RNA modification
   Thai B. Nguyen, Ricardo Miramontes, Carlos Chillón-Marinas, Roy Maimon, Sonia Vazquez‐Sanchez, Alice Lau, Nicolette R. McClure, Zhuoxing Wu, Keona Q. Wang, Whitney England et al. · 2025 · Nature Neuroscience
10. Allele-specific binding of RNA-binding proteins reveals functional genetic variants in the RNA
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11. Integrator restrains paraspeckles assembly by promoting isoform switching of the lncRNA NEAT1
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12. RBFOX2 deregulation promotes pancreatic cancer progression and metastasis through alternative splicing
    Michelle M. Maurin, Mohammadreza Ranjouri, Cristina Megino‐Luque, Justin Y. Newberg, Dongliang Du, Katelyn Martin, Robert E Miner, Mollie S. Prater, Dave Keng Boon Wee, Barbara Ann Centeno et al. · 2023 · Nature Communications
13. Computational analysis of CLIP-seq data
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14. Argonaute binding within 3′-untranslated regions poorly predicts gene repression
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15. The RNA-binding protein IGF2BP3 is critical for MLL-AF4-mediated leukemogenesis
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16. Stress Granules Contain Rbfox2 with Cell Cycle-related mRNAs
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17. Integrative RNA profiling of TBEV-infected neurons and astrocytes reveals potential pathogenic effectors
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18. SON drives oncogenic RNA splicing in glioblastoma by regulating PTBP1/PTBP2 switching and RBFOX2 activity
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19. Imprinted Maternally Expressed microRNAs Antagonize Paternally Driven Gene Programs in Neurons
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20. Stress Granules Involved in Formation, Progression and Metastasis of Cancer: A Scoping Review
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21. Decoding protein–RNA interactions using CLIP-based methodologies
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22. Lso2 is a conserved ribosome-bound protein required for translational recovery in yeast
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23. Skipper analysis of eCLIP datasets enables sensitive detection of constrained translation factor binding sites
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24. Identification of high-confidence RNA regulatory elements by combinatorial classification of RNA–protein binding sites
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26. BUD13 Promotes a Type I Interferon Response by Countering Intron Retention in Irf7
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27. Scalable and deep profiling of mRNA targets for individual microRNAs with chimeric eCLIP
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28. RNA splicing regulators play critical roles in neurogenesis
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31. Intronic ITGA3 Mutation Impacts Splicing Regulation and Causes Interstitial Lung Disease, Nephrotic Syndrome, and Epidermolysis Bullosa
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32. Epigenome-based splicing prediction using a recurrent neural network
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33. Stress-dependent miR-980 regulation of Rbfox1/A2bp1 promotes ribonucleoprotein granule formation and cell survival
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34. Global profiling of hnRNP A2/B1-RNA binding on chromatin highlights LncRNA interactions
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36. Global insights into alternative polyadenylation regulation
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37. Adenovirus-mediated ubiquitination alters protein–RNA binding and aids viral RNA processing
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38. MicroRNA-335-5p suppresses voltage-gated sodium channel expression and may be a target for seizure control
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39. RNA-mediated gene regulation is less evolvable than transcriptional regulation
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40. omniCLIP: probabilistic identification of protein-RNA interactions from CLIP-seq data
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41. Circular exonic RNAs: When RNA structure meets topology
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42. Large scale RNA-binding proteins/LncRNAs interaction analysis to uncover lncRNA nuclear localization mechanisms
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43. Applications of Cas9 as an RNA‐programmed RNA‐binding protein
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44. Argonaute binding within human nuclear RNA and its impact on alternative splicing
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45. Persistent mRNA Localization Defects and Cell Death in ALS Neurons Caused by Transient Cellular Stress
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46. When one becomes many—Alternative splicing in β‐cell function and failure
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47. RNA structure replaces the need for U2AF2 in splicing
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48. HNRNPA1 promotes recognition of splice site decoys by U2AF2 in vivo
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53. ASpedia: a comprehensive encyclopedia of human alternative splicing
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55. Regulatory RNA binding proteins contribute to the transcriptome-wide splicing alterations in human cellular senescence
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56. Intrinsic Regulatory Role of RNA Structural Arrangement in Alternative Splicing Control
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57. Transcriptome-wide analysis of PGC-1α–binding RNAs identifies genes linked to glucagon metabolic action
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58. Nanopore sequencing reveals full‐length Tropomyosin 1 isoforms and their regulation by RNA‐binding proteins during rat heart development
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59. A global screening identifies chromatin-enriched RNA-binding proteins and the transcriptional regulatory activity of QKI5 during monocytic differentiation
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60. RBFOX2 is critical for maintaining alternative polyadenylation patterns and mitochondrial health in rat myoblasts
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61. Transcription Factor GATA4 Regulates Cell Type–Specific Splicing Through Direct Interaction With RNA in Human Induced Pluripotent Stem Cell–Derived Cardiac Progenitors
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62. Repressing Ago2 mRNA translation by Trim71 maintains pluripotency through inhibiting let-7 microRNAs
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63. Inferring Sequence-Structure Preferences of RNA-Binding Proteins with Convolutional Residual Networks
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64. The RNA Base-Pairing Problem and Base-Pairing Solutions
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65. The RNA binding protein FgRbp1 regulates specific pre-mRNA splicing via interacting with U2AF23 in Fusarium
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68. Tissue-selective restriction of RNA editing of CaV1.3 by splicing factor SRSF9
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69. Conserved Methyltransferase Spb1 Targets mRNAs for Regulated Modification with 2′-O-Methyl Ribose
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70. An alternative splicing signature defines the basal-like phenotype and predicts worse clinical outcome in pancreatic cancer
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