Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges
Lovci, Michael T, Ghanem, Dana, Marr, Henry, Arnold, Justin, Gee, Sherry, Parra, Marilyn, Liang, Tiffany Y, Stark, Thomas J, Gehman, Lauren T, Hoon, Shawn, Massirer, Katlin B, Pratt, Gabriel A, Black, Douglas L, Gray, Joe W, Conboy, John G, Yeo, Gene W·2013·Nature Structural & Molecular Biology
Cited by (400)
Items 301–400 of 400
- abcFISH enables multiplexed, single-molecule visualization of circular RNA spatial heterogeneityYu-Xin Liu, Bowen Jiang, Kexing Liu, Li Chun Yang, Ling‐Ling Chen · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Human-specific CCG-repeat insertion in the RBFOX1 promoter implicated in autism and speech enhances EGR1 -responsive activityChul Lee, Matthew H. Davenport, Erich D. Jarvis · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- The identification of protein and RNA interactors of the splicing factor Caper in the adult Drosophila nervous systemM. Brandon Titus, Adeline W. Chang, Niko P. Popitsch, Christopher C. Ebmeier, Jeremy M. Bono, Eugenia C. Olesnicky · 2023 · Frontiers in Molecular Neuroscience
- Evaluation of novel computational methods to identify RNA-binding protein footprints from structural dataOrel Mizrahi, Meredith Corley, Ori Feldman, Thorben Fröhlking, Lei Sun, Alison Ziesel, Maciej Antczak, Mattia Bernetti, Shaimae I. Elhajjajy, Wenze Huang et al. · 2025 · RNA
- Multi-omic screening identifies RBMXL3 as a primate-specific RNA-binding protein and candidate regulator of RNA metabolism in human spermatogenesisAgata J. Barszcz, Katarzyna Tutak, Joanna Zyprych-Walczak, Erik Dassi, Erkut Ilaslan, Malgorzata Dabrowska, Agnieszka Malcher, Marta Olszewska, Dominik Cysewski, Agnieszka Nadel et al. · 2026 · Cellular & Molecular Biology Letters
- RNA-binding proteins TDP-43 and FUS promote R-loop resolution and regulate transcription terminationDorothy Yanling Zhao, Syed Nabeel‐Shah, Zuyao Ni, Shuye Pu, Guoqing Zhong, Frank W. Schmitges, Ulrich Braunschweig, Benjamin J. Blencowe, Jack F. Greenblatt · 2026 · Journal of Biological Chemistry
- Signal or noise? RNA-binding proteins and the challenges of binding site assignmentsSudeep Sahadevan, Thileepan Sekaran, Matthias W. Hentze, Joel I. Perez-Perri, Thomas Schwarzl · 2026 · Nucleic Acids Research
- Clusters of deep intronic RbFox motifs embedded in large assembly of splicing regulators sequences regulate alternative splicingFrancesco Tomassoni‐Ardori, Mary Ellen Palko, Melissa Galloux, Lino Tessarollo · 2025 · PLoS Genetics
- A potential long-range RNA-RNA interaction in the HIV-1 RNAXia Zhou, Zhihua Du, Xiaolan Huang · 2023 · Journal of Biomolecular Structure and Dynamics
- Neuron-specific cTag-CLIP reveals cell-specific diversity of functional RNA regulation in the brainYuhki Saito, Yuan Yuan, Ilana Zucker-Scharff, John J. Fak, Yoko Tajima, Donny D. Licatalosi, Robert B. Darnell · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
- A global map of RNA binding protein occupancy guides functional dissection of post-transcriptional regulation of the T cell transcriptomeAdam J. Litterman, Wandi S. Zhu, Robin Kageyama, Wenxue Zhao, Noah Zaitlen, David J. Erle, Karl Mark Ansel · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
- Empowering the annotation and discovery of structured RNAs with scalable and accessible integrative clusteringMilad Miladi, Eteri Sokhoyan, Torsten Houwaart, Steffen Heyne, Fabrizio Costa, Björn Grüning, Rolf Backofen · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
- Conserved long-range base pairings are associated with pre-mRNA processing of human genesSvetlana Kalmykova, Marina Kalinina, Stepan Denisov, Alexey Mironov, Dmitry Skvortsov, Roderic Guigó, Dmitri Davidovich Pervouchine · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- Synaptic accumulation of FUS triggers age-dependent misregulation of inhibitory synapses in ALS-FUS miceSonu Sahadevan, Katharina Hembach, Elena Tantardini, Manuela Pérez‐Berlanga, Marián Hruška-Plocháň, Julien Weber, Petra Schwarz, Luc Dupuis, Mark D. Robinson, Pierre De Rossi et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- Discovery and Functional Interrogation of the Virus and Host RNA Interactome of SARS-Cov-2 ProteinsJoy S. Xiang, Jasmine R. Mueller, En‐Ching Luo, Brian A. Yee, Danielle M. Schafer, Jonathan C. Schmok, Frederick E. Tan, Hsuan-Lin Her, Chun-Yuan Chen, Kristopher W. Brannan et al. · 2021 · SSRN Electronic Journal
- Frequent co-regulation of splicing and polyadenylation by RNA-binding proteins inferred with MAPPMaciej Bąk, Erik van Nimwegen, Ralf Schmidt, Mihaela Zavolan, Andreas J Gruber · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- Characterization of the regulation of CD46 alternative splicingSze Jing Tang · 2016 · DR-NTU (Nanyang Technological University)
- Deep screening of proximal and distal splicing-regulatory elements in a native sequence contextYocelyn Recinos, Dmytro Ustianenko, Yow-Tyng Yeh, Xiaojian Wang, Martin Jacko, Lekha V. Yesantharao, Qiyang Wu, Chaolin Zhang · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
- Influenza virus antagonizes self sensing by RIG-I to enhance viral replicationMitchell P. Ledwith, Thomas Nipper, Kaitlin A. Davis, Deniz Üresin, Zhenyu Zhang, Mariel Kleer, Denys A. Khaperskyy, Craig McCormick, Anastassia V. Komarova, Andrew Mehle · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Associating cancer-related RNA structure disrupting SNPs in LincRNAs to functionXueer Han, Christian Anthon, Adrian Sven Geissler, Radhakrishnan Sabarinathan, Stefan E. Seemann, Jakob H. Havgaard, Jan Gorodkin · 2025 · BMC Genomics
- ESRP1-Associated CD44 Alternative Splicing Stratifies Epithelial–Mesenchymal Identity States in a Non-Transformed Human Cell SystemKarolina Bajdak-Rusinek, Natalia Diak, Anna Trybus, Agnieszka Fus-Kujawa, Marcelina Salamon, Jan Olszewski, Weronika Wójtowicz, Patrycja Rozwadowska · 2026 · Current Issues in Molecular Biology
- Ancestral intronic splicing regulatory elements in the SCNα gene familyEkaterina А. Chernyavskaya, Margarita A. Vorobeva, Sergei Alexandrovich Spirin, Д А Скворцов, Olga А. Dontsova, Dmitri Davidovich Pervouchine · 2026 · RNA
- Advantages and Challenges of G-Quadruplexes in Regulating Alternative SplicingHaiyan Huang, Xiang Zhou · 2026 · JACS Au
- DDX6 induces immunosuppression in cancer by disrupting structural stability of endogenous double-stranded RNAsLarry Ng, Vincent Tano, Priyankaa Pitcheshwar, Wei Liang Gan, Jinghe Xie, Jesslyn Zhou, Han C. Chong, Danielle Chin, Xi Ren, Ömer An et al. · 2026 · Science Immunology
- The AGO2 adaptor LIMD1 expands the functional and evolutionary reach of microRNA targetingAlex F. F. Crozier, Kunal M. Shah, Paul Grevitt, Anisha Thind, E. Maniati, Jun Wang, Kylie Shen, Diana C Cox, V. Rajeeve, Pedro R. Cutillas et al. · 2026 · Science Advances
- Large‐scale analysis of the position‐dependent binding and regulation of human RNA binding proteinsJianan Lin, Zhengqing Ouyang · 2020 · Quantitative Biology
- BioFeatureFinder: Flexible, unbiased analysis of biological characteristics associated with genomic regionsFelipe E. Ciamponi, Michael Lovci, Pedro Rodrigues Sousa da Cruz, Katlin B. Massirer · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
- Secondary motifs enable concentration-dependent regulation by Rbfox family proteinsBridget E. Begg, Marvin Jens, Peter Y. Wang, Christopher B. Burge · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
- nearBynding: A flexible pipeline characterizing protein binding to local RNA structureVeronica F. Busa, Alexander V. Favorov, Elana Judith Fertig, Anthony K. L. Leung · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- The importance of incorporating transcript information in CLIP-seq data analysisMichaël Uhl, Tran Van Dinh, Rolf Backofen · 2020
- The identification of functional RNA secondary structuresRyan J. Andrews · 2021 · Iowa State University Digital Repository (Iowa State University)
- Tobramycin-induced secretion of P. aeruginosa 5′ tRNA-fMet halves suppresses lung inflammation via AGO2 gene silencingZhongyou Li, Katja Koeppen, Alix Ashare, Deborah A. Hogan, Scott A. Gerber, Bruce A. Stanton · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
- Exonuclease assisted mapping of protein-RNA interactions (ePRINT)Sophie Hawkins, Alexandre Mondaini, Seema Chandramohan Namboori, Asif Javed, Akshay Bhinge · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
- miRNA-mediated expression of RBFOX2 governs the splicing transition from progenitors to neurons in the developing brainStephan Weißbach, Hristo Todorov, Azza Soliman, Laura Schlichtholz, Sophia Mühlbauer, Lea Zografidou, Sarah Lor-Zade, Anna Wierczeiko, Dennis J. Strand, Susanne Strand et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
- LARP6 regulates the mRNA translation of fibrogenic genes in liver fibrosisHyun Young Kim, Orel Mizrahi, Wonseok Lee, Sara Brin Rosenthal, Cuijuan Han, Brian A. Yee, Steven M. Blue, Jesiel Diaz, Jyotiprakash Jonnalagadda, Kanani Hokutan et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- RBFOX2 Autoregulation Promotes Cardiomyocyte Transcriptome Maturation and DifferentiationMengmeng Huang, Feria A. Ladha, Yunxia Wang, Michael A. Trembley, Huimin Yin, Rongbin Zheng, Maksymilian Prondzynski, Yashasvi Tharani, Alexander A. Akerberg, Stefan Aigner et al. · 2026 · Circulation Research
- DDX3X-mediated translation of structured cardiac mRNAs is essential for female heart developmentKayla K. Mason, Seohyun K. Park, James I. Emerson, Yao Wei Lu, Da-Zhi Wang, William F. Marzluff, Frank L. Conlon · 2026 · Genes & Development
- Identification of RNA binding proteins associated with differential splicing in neuroendocrine prostate cancerJake Yeung · 2014 · cIRcle (University of British Columbia)
- SURVEY AND SUMMARY Design and bioinformatics analysis of genome-wide CLIP experimentsTao Wang, Guanghua Xiao, Yongjun Chu, Michael Q. Zhang, David R. Corey, Yang Xie · 2014
- Computational modeling of splicing regulationHai Lin · 2017 · IUScholarWorks (Indiana University)
- HNRNPA1 promotes recognition of splice site decoys by U2AF2 in vivoJonathan M. Howard, Hai Lin, Garam Kım, Jolene M. Draper, Maximilian Haeussler, Sol J. Katzman, Masoud Toloue, Yunlong Liu, Jeremy R. Sanford · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
- Large-scale study of rna processing alterations in multiple cancersBabita Singh · 2017 · LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Científicas)
- Unraveling the missing heritability in ABCA4-associated Stargardt diseaseRiccardo Sangermano · 2018 · Radboud Repository (Radboud University)
- A Genome-Scale Analysis of Alternative Splicing Regulation by Splicing Factors in C. elegansJune H. Tan · 2018 · TSpace (University of Toronto)
- Post-transcriptional gene regulation by the RNA binding protein IGF2BP3 is critical for MLL-AF4 mediated leukemogenesisTiffany M. Tran, Julia Philipp, Jaspal Singh Bassi, Neha Nibber, Jolene M. Draper, Tasha Lotus Lin, Jayanth Kumar Palanichamy, Amit Kumar Jaiswal, Oscar Silva, May Paing et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- The Global Protein-Rna Interaction Map of Epithelial Splicing Regulatory Protein 1 Defines a Post-Transcriptional Program that is Essential for Epithelial Cell FunctionNatoya J. Peart, Jae Yeon Hwang, Mathieu Quesnel- Vallières, Matthew J. Sears, Yuequin Yang, Peter Stoilov, Yoseph Barash, Juw Won Park, Russ P. Carstens · 2021 · SSRN Electronic Journal
- Splicing Factor SRSF1 Deficiency in the Liver Triggers NASH-like Pathology via R-Loop Induced DNA Damage and Cell DeathW. Arif, Bhoomika Mathur, Michael F. Saikali, U. V. Chembazhi, Steven M. Blue, Brian A. Yee, Eric L. Van Nostrand, Sushant Bangru, Qinyu Hao, Gene W. Yeo et al. · 2021 · bioRxiv
- Computational studies on RNA processing in higher eukaryotesBrüggemann, Mirko · 2021 · Publication Server of Goethe University Frankfurt am Main (Goethe University Frankfurt)
- Identification of biological characteristics associated with RNA-binding proteins (RBPs) target sitesFelipe E. Ciamponi · 2018
- Introduction to Bioinformatics Resources for Post-transcriptional Regulation of Gene ExpressionEliana Destefanis, Erik Dassi · 2021 · Methods in molecular biology
- Faculty Opinions recommendation of Musashi-2 attenuates AHR signalling to expand human haematopoietic stem cells.Hal E. Broxmeyer · 2019 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
- Faculty Opinions recommendation of PRAS: Predicting functional targets of RNA binding proteins based on CLIP-seq peaks.Janusz Marek Bujnicki, Pritha Ghosh · 2020 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
- Faculty Opinions recommendation of Advances and challenges in the detection of transcriptome-wide protein-RNA interactions.Roderic Guigó · 2018 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
- Additional file 9 of A global screening identifies chromatin-enriched RNA-binding proteins and the transcriptional regulatory activity of QKI5 during monocytic differentiationYue Ren, Yue Huo, Weiqian Li, Manman He, Siqi Liu, Jiabin Yang, Hongmei Zhao, Lingjie Xu, Yuehong Guo, Yanmin Si et al. · 2021 · Figshare
- Additional file 3 of A global screening identifies chromatin-enriched RNA-binding proteins and the transcriptional regulatory activity of QKI5 during monocytic differentiationYue Ren, Yue Huo, Weiqian Li, Manman He, Siqi Liu, Jiabin Yang, Hongmei Zhao, Lingjie Xu, Yuehong Guo, Yanmin Si et al. · 2021 · Figshare
- Additional file 8 of A global screening identifies chromatin-enriched RNA-binding proteins and the transcriptional regulatory activity of QKI5 during monocytic differentiationYue Ren, Yue Huo, Weiqian Li, Manman He, Siqi Liu, Jiabin Yang, Hongmei Zhao, Lingjie Xu, Yuehong Guo, Yanmin Si et al. · 2021 · Figshare
- Additional file 6 of A global screening identifies chromatin-enriched RNA-binding proteins and the transcriptional regulatory activity of QKI5 during monocytic differentiationYue Ren, Yue Huo, Weiqian Li, Manman He, Siqi Liu, Jiabin Yang, Hongmei Zhao, Lingjie Xu, Yuehong Guo, Yanmin Si et al. · 2021 · Figshare
- Additional file 2 of A global screening identifies chromatin-enriched RNA-binding proteins and the transcriptional regulatory activity of QKI5 during monocytic differentiationYue Ren, Yue Huo, Weiqian Li, Manman He, Siqi Liu, Jiabin Yang, Hongmei Zhao, Lingjie Xu, Yuehong Guo, Yanmin Si et al. · 2021 · Figshare
- Additional file 4 of A global screening identifies chromatin-enriched RNA-binding proteins and the transcriptional regulatory activity of QKI5 during monocytic differentiationYue Ren, Yue Huo, Weiqian Li, Manman He, Siqi Liu, Jiabin Yang, Hongmei Zhao, Lingjie Xu, Yuehong Guo, Yanmin Si et al. · 2021 · Figshare
- Additional file 10 of A global screening identifies chromatin-enriched RNA-binding proteins and the transcriptional regulatory activity of QKI5 during monocytic differentiationYue Ren, Yue Huo, Weiqian Li, Manman He, Siqi Liu, Jiabin Yang, Hongmei Zhao, Lingjie Xu, Yuehong Guo, Yanmin Si et al. · 2021 · Figshare
- Additional file 7 of A global screening identifies chromatin-enriched RNA-binding proteins and the transcriptional regulatory activity of QKI5 during monocytic differentiationYue Ren, Yue Huo, Weiqian Li, Manman He, Siqi Liu, Jiabin Yang, Hongmei Zhao, Lingjie Xu, Yuehong Guo, Yanmin Si et al. · 2021 · Figshare
- Additional file 5 of A global screening identifies chromatin-enriched RNA-binding proteins and the transcriptional regulatory activity of QKI5 during monocytic differentiationYue Ren, Yue Huo, Weiqian Li, Manman He, Siqi Liu, Jiabin Yang, Hongmei Zhao, Lingjie Xu, Yuehong Guo, Yanmin Si et al. · 2021 · Figshare
- The RNA-binding selectivity of the RGG/RG motifs of hnRNP U is abolished by elements within the intrinsically disordered regionOtto A. Kletzien, Deborah S. Wuttke, Robert Batey · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
- The polyadenosine RNA binding protein Nab2 regulates alternative splicing and intron retention during Drosophila melanogaster brain developmentSeth M. Kelly, Allison Paschack, Gargi Mishra, Jinsoo Ahn, Emma Smith, Katie Haynes, Katherine Shelmidine, Kichoon Lee, Andre Yazhbin, Young Rae Ji · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
- AVJ16 inhibits the RNA binding protein IGF2BP1 in lung adenocarcinomas and prevents tumor growth in miceNadav Wallis, Tehila Gershon, Sojod Shaaby, Froma Oberman, Myriam Grunewald, Deborah Duran, Amandeep Singh, Gilad Wolf Vainer, Vladimir S. Spiegelman, Arun Kumar Sharma et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
- QKI ensures splicing fidelity during cardiogenesis by engaging the U6 tri-snRNP to activate splicing at weak 5ʹ splice sitesMaureen V. Akinyi, Wenjie Yao, Jakub Zeman, Clara Hipp, Deniz Bartsch, Laurence Heaven, Charlotte A. Le Roux, Anne C Starner, Fei Yuan, Mason D. Bartels et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- An AGO2 adaptor expands the functional and evolutionary reach of microRNA targetingAlex F. F. Crozier, Kunal M. Shah, Paul Grevitt, Anisha Thind, E. Maniati, Jun Wang, Kylie Shen, Diana C Cox, V. Rajeeve, Pedro R. Cutillas et al. · 2025 · bioRxiv
- Unveiling the Role of circRNAs in Pyroptotic Signalling: From Molecular Crosstalk to Disease ModulationTengyu Jin, Guodong Xu, Wanru Zhou, Yifeng Shi, Huanfei Wang · 2025 · Journal of Cellular and Molecular Medicine
- Additional file 8 of GCLiPP: global crosslinking and protein purification method for constructing high-resolution occupancy maps for RNA binding proteinsZhu, Wandi S., Adam J. Litterman, Harshaan Sekhon, Robin Kageyama, Maya M. Arce, Kimberly E. Taylor, Zhao, Wenxue, Criswell, Lindsey A., Noah Zaitlen, David J. Erle et al. · 2024 · Figshare
- Additional file 1 of A global screening identifies chromatin-enriched RNA-binding proteins and the transcriptional regulatory activity of QKI5 during monocytic differentiationRen, Yue, Yue Huo, Li, Weiqian, He, Manman, Liu, Siqi, Yang, Jiabin, Zhao, Hongmei, Lingjie Xu, Yuehong Guo, Si, Yanmin et al. · 2021 · Figshare
- Additional file 3 of ePRINT: exonuclease assisted mapping of protein-RNA interactionsSophie Hawkins, Alexandre Mondaini, Seema Chandramohan Namboori, Grady G. Nguyen, Gene Wei-Ming Yeo, Javed, Asif, Akshay Bhinge · 2024 · Figshare
- Additional file 2 of ePRINT: exonuclease assisted mapping of protein-RNA interactionsSophie Hawkins, Alexandre Mondaini, Seema Chandramohan Namboori, Grady G. Nguyen, Gene Wei-Ming Yeo, Asif Javed, Akshay Bhinge · 2024 · Figshare
- Additional file 5 of GCLiPP: global crosslinking and protein purification method for constructing high-resolution occupancy maps for RNA binding proteinsZhu, Wandi S., Adam J. Litterman, Harshaan Sekhon, Robin Kageyama, Maya M. Arce, Kimberly E. Taylor, Zhao, Wenxue, Criswell, Lindsey A., Noah Zaitlen, David J. Erle et al. · 2024 · Figshare
- Additional file 8 of Transcriptome-wide profiles of circular RNA and RNA-binding protein interactions reveal effects on circular RNA biogenesis and cancer pathway expressionTrine Line Hauge Okholm, Shashank Sathe, Samuel S. Park, Andreas Bjerregaard Kamstrup, Asta Mannstaedt Rasmussen, Shankar, Archana, Chua, Zong Ming, Fristrup, Niels, Morten Muhlig Nielsen, Søren Vang et al. · 2020 · Figshare
- Additional file 6 of Uncovering deeply conserved motif combinations in rapidly evolving noncoding sequencesCaroline Jane Ross, Aviv Rom, Amit Spinrad, Dikla Gelbard-Solodkin, Neta Degani, Igor Ulitsky · 2021 · Figshare
- Additional file 4 of GCLiPP: global crosslinking and protein purification method for constructing high-resolution occupancy maps for RNA binding proteinsZhu, Wandi S., Adam J. Litterman, Harshaan Sekhon, Robin Kageyama, Maya M. Arce, Kimberly E. Taylor, Zhao, Wenxue, Criswell, Lindsey A., Noah Zaitlen, David J. Erle et al. · 2024 · Figshare
- Additional file 3 of GCLiPP: global crosslinking and protein purification method for constructing high-resolution occupancy maps for RNA binding proteinsZhu, Wandi S., Adam J. Litterman, Harshaan Sekhon, Robin Kageyama, Maya M. Arce, Kimberly E. Taylor, Zhao, Wenxue, Criswell, Lindsey A., Noah Zaitlen, David J. Erle et al. · 2024 · Figshare
- Additional file 7 of Uncovering deeply conserved motif combinations in rapidly evolving noncoding sequencesCaroline Jane Ross, Aviv Rom, Amit Spinrad, Dikla Gelbard-Solodkin, Neta Degani, Igor Ulitsky · 2021 · Figshare
- Additional file 2 of Improving CLIP-seq data analysis by incorporating transcript informationMichaël Uhl, Tran, Van Dinh, Backofen, Rolf · 2020 · Figshare
- Additional file 2 of GCLiPP: global crosslinking and protein purification method for constructing high-resolution occupancy maps for RNA binding proteinsZhu, Wandi S., Adam J. Litterman, Harshaan Sekhon, Robin Kageyama, Maya M. Arce, Kimberly E. Taylor, Zhao, Wenxue, Criswell, Lindsey A., Noah Zaitlen, David J. Erle et al. · 2024 · Figshare
- Additional file 1 of ePRINT: exonuclease assisted mapping of protein-RNA interactionsSophie Hawkins, Alexandre Mondaini, Seema Chandramohan Namboori, Grady G. Nguyen, Gene Wei-Ming Yeo, Javed, Asif, Akshay Bhinge · 2024 · Figshare
- Additional file 7 of GCLiPP: global crosslinking and protein purification method for constructing high-resolution occupancy maps for RNA binding proteinsZhu, Wandi S., Adam J. Litterman, Harshaan Sekhon, Robin Kageyama, Maya M. Arce, Kimberly E. Taylor, Zhao, Wenxue, Criswell, Lindsey A., Noah Zaitlen, David J. Erle et al. · 2024 · Figshare
- Additional file 6 of GCLiPP: global crosslinking and protein purification method for constructing high-resolution occupancy maps for RNA binding proteinsZhu, Wandi S., Adam J. Litterman, Harshaan Sekhon, Robin Kageyama, Maya M. Arce, Kimberly E. Taylor, Zhao, Wenxue, Criswell, Lindsey A., Noah Zaitlen, David J. Erle et al. · 2024 · Figshare
- Additional file 1 of GCLiPP: global crosslinking and protein purification method for constructing high-resolution occupancy maps for RNA binding proteinsZhu, Wandi S., Adam J. Litterman, Harshaan Sekhon, Robin Kageyama, Maya M. Arce, Kimberly E. Taylor, Zhao, Wenxue, Criswell, Lindsey A., Noah Zaitlen, David J. Erle et al. · 2024 · Figshare
- Additional file 1 of Uncovering deeply conserved motif combinations in rapidly evolving noncoding sequencesCaroline Jane Ross, Aviv Rom, Amit Spinrad, Dikla Gelbard-Solodkin, Neta Degani, Igor Ulitsky · 2021 · Figshare
- Additional file 11 of A global screening identifies chromatin-enriched RNA-binding proteins and the transcriptional regulatory activity of QKI5 during monocytic differentiationRen, Yue, Yue Huo, Weiqian Li, He, Manman, Liu, Siqi, Yang, Jiabin, Zhao, Hongmei, Lingjie Xu, Yuehong Guo, Si, Yanmin et al. · 2021 · Figshare
- The differential responses of two strains of blunt snout bream (Megalobrama amblycephala) to different dietary carbohydrate levels with insights from transcriptome analysisYunwen Cui, Chunsen Xu, Xigeng Hu, Tao Wang, Jing Jiang, Futie Zhang · 2026 · Aquaculture Reports
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- Interpretable machine learning enables de novo mapping of cell type-specific RNA splicing regulation from scRNA-seq dataXuerui Yang, Xianke Xiang · 2026 · Nature Communications
- Gibbs Sampler and De Novo Motif DiscoveryXuhua Xia · 2026 · Springer eBooks
- High-resolution mapping of CCR4-NOT recruitment elements reveals transcriptome-wide drivers of mRNA decayZijun Luo, Aldo Hernández-Corchado, William R. Brothers, Zahra Aryanpour, Zia Z. Zhao, Justin Zhao, Lindsay Clarke, Connor CampbellSmith, Gene Wei-Ming Yeo, Hamed Shateri Najafabadi et al. · 2026 · Cell Reports
- Cell-type-resolved RNP topologies reveal dynamic structural mechanisms of splicing and therapeutic targetsJianhui Bai, Kongpan Li, Wei Zhang, Minjie Zhang, Grant M. Shoffner, Willem A. Velema, Jianfu Chen, Feng Guo, Zhipeng Lu · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- TIA1 depletion enhances CLSTN1 exon 11 inclusion to facilitate Epithelial-to-Mesenchymal transition and breast cancer metastasisYaxuan Sun, Rongrong Feng, Xun Zhou, Wuqin Xu, Huimin Du, Xiezong Hu, Liang Chen, Yongping Cai, Xiaohui Hu · 2026 · Oncogene
- A positional and combinatorial regulatory code for alternative splicingMina Yoshida, Masahiko Ajiro, Hiroki Ueda, Kazuki Nishimura, Ryoichi Maenosono, Mayumi Hanzawa, Natsuko Shinohara, Marimu Sakumoto, Syuzo Kaneko, Ryuji Hamamoto et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- The RNA binding protein ZFP36L2 displays tissue-selective mRNA targeting in miceGeorge Stephen Stephenson, Dalia Fleifel, Jeanette Gowen Cook, Alain Laederach, Silvia B. V. Ramos · 2026 · RNA Biology
- Updated guide to RNA quantification by RNA sequencing and reverse transcription-qPCRDajeong Bong, Kyungjin C. Lee, Gee‐Yoon Lee, Seung‐Jae Lee · 2026 · Molecules and Cells
- Alternative splicing stabilizes MARK3 by removing a ubiquitination site and enhances tumor suppressionJung-Min Lee, Heon Jong Yoo, Namjoon Cho, Kee Kwang Kim · 2026 · Genes & Diseases
- The RNA structural code: orchestrating gene expression and enabling precision therapiesNan-nan Fang, Qu-bo Zhu · 2026 · Acta Pharmacologica Sinica
- N 6-methyladenosine promotes temozolomide resistance through mRNA stabilization in glioblastoma cellsEmily A. Dangelmaier, Dorthy Fang, Isabel Hardy, Kyal Sin Htet, Nicole S. Harry, Renee Pascoe, Je Won Yang, Clara D. Wang, Sigrid Nachtergaele · 2026 · NAR Cancer
- Influenza virus antagonizes self-sensing by RIG-I to enhance viral replicationMitchell P. Ledwith, Thomas Nipper, Kaitlin A. Davis, Deniz Üresin, Zhenyu Zhang, Mariel Kleer, Denys A. Khaperskyy, Craig McCormick, Anastassia V. Komarova, Andrew Mehle · 2026 · Cell Reports