The DOI matches its Crossref record; 55 of the 55 references it cites were found in a registry or an index.
Methanogenesis in oxygenated soils is a substantial fraction of wetland methane emissions
Open accessAbstract
The current paradigm, widely incorporated in soil biogeochemical models, is that microbial methanogenesis can only occur in anoxic habitats. In contrast, here we show clear geochemical and biological evidence for methane production in well-oxygenated soils of a freshwater wetland. A comparison of oxic to anoxic soils reveal up to ten times greater methane production and nine times more methanogenesis activity in oxygenated soils. Metagenomic and metatranscriptomic sequencing recover the first near-complete genomes for a novel methanogen species, and show acetoclastic production from this organism was the dominant methanogenesis pathway in oxygenated soils. This organism, Candidatus Methanothrix paradoxum, is prevalent across methane emitting ecosystems, suggesting a global significance. Moreover, in this wetland, we estimate that up to 80% of methane fluxes could be attributed to methanogenesis in oxygenated soils. Together, our findings challenge a widely held assumption about methanogenesis, with significant ramifications for global methane estimates and Earth system modeling.
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Fast gapped-read alignment with Bowtie 2
Langmead, B., & Salzberg, S. L. (2012) · Nature Methods · doi:10.1038/nmeth.1923 · Cited by 56,400
MUSCLE: multiple sequence alignment with high accuracy and high throughput
Edgar, R. C. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh340 · Cited by 44,662
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Stamatakis, A. (2014) · Bioinformatics · doi:10.1093/bioinformatics/btu033 · Cited by 32,291
Search and clustering orders of magnitude faster than BLAST
Edgar, R. C. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btq461 · Cited by 20,826
Trapnell, C., Williams, B. A., Pertea, G., Mortazavi, A., Kwan, G., van Baren, M. J., Salzberg, S. L., Wold, B. J., & Pachter, L. (2010) · Nature Biotechnology · doi:10.1038/nbt.1621 · Cited by 15,556
The Phyre2 web portal for protein modeling, prediction and analysis
Kelley, L. A., Mezulis, S., Yates, C. M., Wass, M. N., & Sternberg, M. J. E. (2015) · Nature Protocols · doi:10.1038/nprot.2015.053 · Cited by 9,652
ARB: a software environment for sequence data
Ludwig, W. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh293 · Cited by 6,702
Correction of flux measurements for density effects due to heat and water vapour transfer
Webb, E. K., Pearman, G. I., & Leuning, R. (1980) · Quarterly Journal of the Royal Meteorological Society · doi:10.1002/qj.49710644707 · Cited by 4,452
Reichstein, M., Falge, E., Baldocchi, D., Papale, D., Aubinet, M., Berbigier, P., Bernhofer, C., Buchmann, N., Gilmanov, T., Granier, A., et al. (2005) · Global Change Biology · doi:10.1111/j.1365-2486.2005.001002.x · Cited by 3,810
Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation
Letunic, I., & Bork, P. (2007) · Bioinformatics · doi:10.1093/bioinformatics/btl529 · Cited by 3,299
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The Global Methane Budget 2000–2017
Saunois, M., Stavert, A. R., Poulter, B., Bousquet, P., Canadell, J. G., Jackson, R. B., Raymond, P. A., Dlugokencky, E. J., Houweling, S., Patra, P. K., et al. (2019) · doi:10.5194/essd-2019-128 · Cited by 2,760
Self-citationThe Global Methane Budget 2000–2017
Saunois, M., Stavert, A. R., Poulter, B., Bousquet, P., Canadell, J. G., Jackson, R. B., Raymond, P. A., Dlugokencky, E. J., Houweling, S., Patra, P. K., et al. (2020) · Earth System Science Data · doi:10.5194/essd-12-1561-2020 · Cited by 2,711
Self-citationInskeep, W. P., Jay, Z. J., McKay, L. J., & Dlakić, M. (2025) · Nature Communications · doi:10.1038/s41467-024-55079-z · Cited by 9
Metadata
- Authors
- Angle, J. C., Morin, T. H., Solden, L. M., Narrowe, A. B., Smith, G. J., Borton, M. A., Rey-Sanchez, C., Daly, R. A., Mirfenderesgi, G., Hoyt, D. W., Riley, W. J., Miller, C. S., Bohrer, G., & Wrighton, K. C.
- Venue
- Nature Communications
- Published
- 2017-11-16
- Volume
- 8
- Issue
- 1
- Pages
- 1567-1567
- ISSN
- 2041-1723 (ISSN-L)
- OpenAlex
- W2767350041
- Cited by
- 293
- References
- 55
- FWCI
- 16.83
- Type
- journal article
- Language
- en
- Open access
- gold
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- Angle, J. C., Morin, T. H., Solden, L. M., Narrowe, A. B., Smith, G. J., Borton, M. A., Rey-Sanchez, C., Daly, R. A., Mirfenderesgi, G., Hoyt, D. W., Riley, W. J., Miller, C. S., Bohrer, G., & Wrighton, K. C. (2017). Methanogenesis in oxygenated soils is a substantial fraction of wetland methane emissions. Nature Communications. https://doi.org/10.1038/s41467-017-01753-4
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
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