The DOI matches its Crossref record; 52 of the 52 references it cites were found in a registry or an index.
Nutrient supply controls the linkage between species abundance and ecological interactions in marine bacterial communities
Open accessAbstract
Nutrient scarcity is pervasive for natural microbial communities, affecting species reproduction and co-existence. However, it remains unclear whether there are general rules of how microbial species abundances are shaped by biotic and abiotic factors. Here we show that the ribosomal RNA gene operon (rrn) copy number, a genomic trait related to bacterial growth rate and nutrient demand, decreases from the abundant to the rare biosphere in the nutrient-rich coastal sediment but exhibits the opposite pattern in the nutrient-scarce pelagic zone of the global ocean. Both patterns are underlain by positive correlations between community-level rrn copy number and nutrients. Furthermore, inter-species co-exclusion inferred by negative network associations is observed more in coastal sediment than in ocean water samples. Nutrient manipulation experiments yield effects of nutrient availability on rrn copy numbers and network associations that are consistent with our field observations. Based on these results, we propose a “hunger games” hypothesis to define microbial species abundance rules using the rrn copy number, ecological interaction, and nutrient availability.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
UPARSE: highly accurate OTU sequences from microbial amplicon reads
Edgar, R. C. (2013) · Nature Methods · doi:10.1038/nmeth.2604 · Cited by 16,707
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
Caporaso, J. G., Lauber, C. L., Walters, W. A., Berg-Lyons, D., Lozupone, C. A., Turnbaugh, P. J., Fierer, N., & Knight, R. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1000080107 · Cited by 9,711
Phylogenies and Community Ecology
Webb, C. O., Ackerly, D. D., McPeek, M. A., & Donoghue, M. J. (2002) · Annual Review of Ecology and Systematics · doi:10.1146/annurev.ecolsys.33.010802.150448 · Cited by 4,609
Microbial diversity in the deep sea and the underexplored “rare biosphere”
Sogin, M. L., Morrison, H. G., Huber, J. A., Welch, D. M., Huse, S. M., Neal, P. R., Arrieta, J. M., & Herndl, G. J. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0605127103 · Cited by 3,701
Conceptual Synthesis in Community Ecology
Vellend, M. (2010) · The Quarterly Review of Biology · doi:10.1086/652373 · Cited by 2,832
The ecology of the microbiome: Networks, competition, and stability
Coyte, K. Z., Schluter, J., & Foster, K. R. (2015) · Science · doi:10.1126/science.aad2602 · Cited by 2,748
A communal catalogue reveals Earth's multiscale microbial diversity
Thompson, L. R., Sanders, J. G., McDonald, D., Amir, A., Ladau, J., Locey, K. J., Prill, R. J., Tripathi, A., Gibbons, S. M., Ackermann, G., et al. (2017) · Nature · doi:10.1038/nature24621 · Cited by 2,684
Self-citationBiological stoichiometry from genes to ecosystems
Elser, J. J., Sterner, R. W., Gorokhova, E., Fagan, W. F., Markow, T. A., Cotner, J. B., Harrison, J. F., Hobbie, S. E., Odell, G. M., & Weider, L. W. (2000) · Ecology Letters · doi:10.1046/j.1461-0248.2000.00185.x · Cited by 1,360
Ecology and exploration of the rare biosphere
Lynch, M. D. J., & Neufeld, J. D. (2015) · Nature Reviews Microbiology · doi:10.1038/nrmicro3400 · Cited by 1,268
Větrovský, T., & Baldrian, P. (2013) · PLoS ONE · doi:10.1371/journal.pone.0057923 · Cited by 1,208
Metadata
- Authors
- Dai, T., Wen, D., Bates, C. T., Wu, L., Guo, X., Liu, S., Su, Y., Lei, J., Zhou, J., & Yang, Y.
- Venue
- Nature Communications
- Published
- 2022-01-10
- Volume
- 13
- Issue
- 1
- Pages
- 175-175
- ISSN
- 2041-1723 (ISSN-L)
- OpenAlex
- W4205779084
- Cited by
- 470
- References
- 52
- FWCI
- 45.41
- Type
- journal article
- Language
- en
- Open access
- gold
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: Nutrient supply controls the linkage between species abundance and ecological interactions in marine bacterial communities. https://app.cochat.ai/papers/10.1038/s41467-021-27857-6
- The paper
- Dai, T., Wen, D., Bates, C. T., Wu, L., Guo, X., Liu, S., Su, Y., Lei, J., Zhou, J., & Yang, Y. (2022). Nutrient supply controls the linkage between species abundance and ecological interactions in marine bacterial communities. Nature Communications. https://doi.org/10.1038/s41467-021-27857-6
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.