Cited by 52Mitochondrial Function and PathologyATP Synthase and ATPases ResearchAutophagy in Disease and Therapy

The DOI matches its Crossref record; its reference list is not available.

Structural basis for regulated assembly of the mitochondrial fission GTPase Drp1

Open access

Published version of a preprint

Abstract

Mitochondrial fission is a critical cellular event to maintain organelle function. This multistep process is initiated by the enhanced recruitment and oligomerization of dynamin-related protein 1 (Drp1) at the surface of mitochondria. As such, Drp1 is essential for inducing mitochondrial division in mammalian cells, and homologous proteins are found in all eukaryotes. As a member of the dynamin superfamily of proteins (DSPs), controlled Drp1 self-assembly into large helical polymers stimulates its GTPase activity to promote membrane constriction. Still, little is known about the mechanisms that regulate correct spatial and temporal assembly of the fission machinery. Here we present a cryo-EM structure of a full-length Drp1 dimer in an auto-inhibited state. This dimer reveals two key conformational rearrangements that must be unlocked through intramolecular rearrangements to achieve the assembly-competent state observed in previous structures. This structural insight provides understanding into the mechanism for regulated self-assembly of the mitochondrial fission machinery.

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1038/s41467-024-45524-4

Cites

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

No citation lists for this paper

No citation lists for this paper yet — checked again daily.

References 40 · Cited by 52

Research works printed but not linked: 33

  1. Ferguson, K. M., Lemmon, M. A., Schlessinger, J. & Sigler, P. B. Crystal structure at 2.2 A resolution of the pleckstrin homology domain from human dynamin. Cell 79, 199–209 (1994). · DOI
  2. Jimah, J. R. & Hinshaw, J. E. Structural Insights into the Mechanism of Dynamin Superfamily Proteins. Trends Cell Biol. 29, 257–273 (2019). · DOI
  3. Francy, C. A., Clinton, R. W., Frohlich, C., Murphy, C. & Mears, J. A. Cryo-EM Studies of Drp1 Reveal Cardiolipin Interactions that Activate the Helical Oligomer. Sci. Rep. 7, 3 (2017). · DOI
  4. Kalia, R. et al. Structural basis of mitochondrial receptor binding and constriction by DRP1. Nature 558, 401–405 (2018). · DOI
  5. Niemann, H. H., Knetsch, M. L., Scherer, A., Manstein, D. J. & Kull, F. J. Crystal structure of a dynamin GTPase domain in both nucleotide-free and GDP-bound forms. EMBO J. 20, 5813–5821 (2001). · DOI
  6. Gao, S. et al. Structural basis of oligomerization in the stalk region of dynamin-like MxA. Nature 465, 502–506 (2010). · DOI
  7. Reubold, T. F. et al. Crystal structure of the GTPase domain of rat dynamin 1. Proc. Natl Acad. Sci. USA 102, 13093–13098 (2005). · DOI
  8. Ford, M. G., Jenni, S. & Nunnari, J. The crystal structure of dynamin. Nature 477, 561–566 (2011). · DOI
  9. Fröhlich, C. et al. Structural insights into oligomerization and mitochondrial remodelling of dynamin 1‐like protein. EMBO J. 32, 1280–1292 (2013). · DOI
  10. Faelber, K. et al. Crystal structure of nucleotide-free dynamin. Nature 477, 556–560 (2011). · DOI · Paper page
  11. Gao, S. et al. Structure of myxovirus resistance protein a reveals intra- and intermolecular domain interactions required for the antiviral function. Immunity 35, 514–525 (2011). · DOI
  12. Chappie, J. S. et al. A pseudoatomic model of the dynamin polymer identifies a hydrolysis-dependent powerstroke. Cell 147, 209–222 (2011). · DOI
  13. Mahajan, M. et al. NMR identification of a conserved Drp1 cardiolipin-binding motif essential for stress-induced mitochondrial fission. Proc. Natl. Acad. Sci. USA. 118 (2021). https://doi.org/10.1073/pnas.2023079118 · DOI
  14. Strack, S. & Cribbs, J. T. Allosteric modulation of Drp1 mechanoenzyme assembly and mitochondrial fission by the variable domain. J. Biol. Chem. 287, 10990–11001 (2012). · DOI
  15. Kwapiszewska, K. et al. Determination of oligomerization state of Drp1 protein in living cells at nanomolar concentrations. Sci. Rep. 9, 5906 (2019). · DOI
  16. Macdonald, P. J. et al. A dimeric equilibrium intermediate nucleates Drp1 reassembly on mitochondrial membranes for fission. Mol. Biol. Cell 25, 1905–1915 (2014). · DOI
  17. Clinton, R. W., Bauer, B. L. & Mears, J. A. Affinity Purification and Functional Characterization of Dynamin-Related Protein 1. Methods Mol. Biol. 2159, 41–53 (2020). · DOI
  18. Chang, C. R. et al. A lethal de novo mutation in the middle domain of the dynamin-related GTPase Drp1 impairs higher order assembly and mitochondrial division. J. Biol. Chem. 285, 32494–32503 (2010). · DOI
  19. Ingerman, E. et al. Dnm1 forms spirals that are structurally tailored to fit mitochondria. J. Cell Biol. 170, 1021–1027 (2005). · DOI
  20. Bohuszewicz, O. & Low, H. H. Structure of a mitochondrial fission dynamin in the closed conformation. Nat. Struct. Mol. Biol. 25, 722–731 (2018). · DOI
  21. Clinton, R. W., Francy, C. A., Ramachandran, R., Qi, X. & Mears, J. A. Dynamin-related Protein 1 Oligomerization in Solution Impairs Functional Interactions with Membrane-anchored Mitochondrial Fission Factor. J. Biol. Chem. 291, 478–492 (2016). · DOI
  22. Lu, B. et al. Steric interference from intrinsically disordered regions controls dynamin-related protein 1 self-assembly during mitochondrial fission. Sci. Rep. 8, 10879 (2018). · DOI
  23. Punjani, A., Rubinstein, J. L., Fleet, D. J. & Brubaker, M. A. cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination. Nat. Methods 14, 290–296 (2017). · DOI · Paper page
  24. Zheng, S. Q. et al. MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy. Nat. Methods 14, 331–332 (2017). · DOI
  25. Bepler, T. et al. Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs. Nat. Methods 16, 1153–1160 (2019). · DOI
  26. Punjani, A., Zhang, H. & Fleet, D. J. Non-uniform refinement: adaptive regularization improves single-particle cryo-EM reconstruction. Nat. Methods 17, 1214–1221 (2020). · DOI
  27. Pettersen, E. F. et al. UCSF Chimera-a visualization system for exploratory research and analysis. J. Comput. Chem. 25, 1605–1612 (2004). · DOI
  28. Humphrey, W., Dalke, A. & Schulten, K. VMD: visual molecular dynamics. J. Mol. Graph 14, 33–38, 27–38 (1996). · DOI · Paper page
  29. Trabuco, L. G., Villa, E., Mitra, K., Frank, J. & Schulten, K. Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics. Structure 16, 673–683 (2008). · DOI
  30. Liebschner, D. et al. Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix. Acta. Crystallogr. D. Struct. Biol. 75, 861–877 (2019). · DOI · Paper page
  31. Afonine, P. V. et al. Real-space refinement in PHENIX for cryo-EM and crystallography. Acta. Crystallogr. D. Struct. Biol. 74, 531–544 (2018). · DOI
  32. Francy, C. A., Alvarez, F. J., Zhou, L., Ramachandran, R. & Mears, J. A. The mechanoenzymatic core of dynamin-related protein 1 comprises the minimal machinery required for membrane constriction. J. Biol. Chem. 290, 11692–11703 (2015). · DOI
  33. Mears, J. A. & Hinshaw, J. E. Visualization of dynamins. Methods Cell Biol. 88, 237–256 (2008). · DOI

Metadata

Authors
Rochon, K., Bauer, B. L., Roethler, N. A., Buckley, Y., Su, C.-C., Huang, W., Ramachandran, R., Stoll, M. S. K., Yu, E. W., Taylor, D. J., & Mears, J. A.
Affiliations
Case Western Reserve University (US)
Corresponding author
Mears, Jason A.
Venue
Nature Communications
Published
2024-02-13
Volume
15
Issue
1
Pages
1328-1328
ISSN
2041-1723 (ISSN-L)
OpenAlex
W4391786421
Cited by
52
References
40
Citations by year
2026: 24 · 2025: 22 · 2024: 5
FWCI
6.87
Type
journal article
Language
en
Open access
Locations
  • Nature Communications (publishedVersion, cc-by)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • RePEc: Research Papers in Economics (submittedVersion)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
Funders
U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (R01 GM125844, F31 GM139324, U24 GM116792)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Mitochondrial Function and Pathology
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › ATP Synthase and ATPases Research
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Autophagy in Disease and Therapy
Keywords
Drp1, mitochondrial fission, dynamin-related proteins, dynamin superfamily, GTPase activity, protein self-assembly, conformational change, mitochondrial division, membrane constriction
MeSH terms
Animals, Mammals, Microtubule-Associated Proteins, Mitochondria, GTP Phosphohydrolases, Mitochondrial Proteins, Dynamins, Mitochondrial Dynamics

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review