The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
Structural insights into the human P2X1 receptor and ligand interactions
Open accessPublished version of a preprint
Abstract
Abstract The P2X1 receptor is a trimeric ligand-gated ion channel that plays a pivotal role in urogenital and immune functions. Consequently, it offers numerous potential indications for novel drug treatments. Unfortunately, the progress of drug discovery targeting the P2X1 receptor has been impeded by the absence of structural information. To gain deeper insights into the binding site of the P2X1 receptor, we employed cryogenic electron microscopy (cryo-EM) to elucidate the structures of the P2X1 receptor in both an ATP-bound desensitised state and an NF449-bound closed state. NF449 is a potent P2X1 receptor antagonist and engages with the receptor in a distinctive manner. To gain insights into the molecular machinery governing receptor inhibition and activation and better understand P2X1 receptor ligand subtype selectivity, critical P2X1 receptor residues involved in ligand binding were mutated. Radioligand binding assays with [ 3 H]-α,β-methylene ATP and intracellular calcium influx were employed to assess the effect of these mutations on ligand binding and receptor activation, thereby validating key ligand-receptor interactions. This research expands our understanding of the P2X1 receptor structure at a molecular level and opens new avenues for in silico drug design targeting the P2X1 receptor.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
Flagged first, then by citations
Research works printed but not linked: 54
- Burnstock, G. The therapeutic potential of purinergic signalling. Biochem. Pharmacol. 151, 157–165 (2018). · DOI
- Kawate, T., Michel, J. C., Birdsong, W. T. & Gouaux, E. Crystal structure of the ATP-gated P2X 4 ion channel in the closed state. Nature 460, 592–598 (2009). · DOI
- Saul, A., Hausmann, R., Kless, A. & Nicke, A. Heteromeric assembly of P2X subunits. Front. Cell. Neurosci. 7, 250 (2013). · DOI
- North, R. A. Molecular physiology of P2X receptors. Physiol. Rev. 82, 1013–1068 (2002). · DOI · Paper page
- Illes, P. et al. Update of P2X receptor properties and their pharmacology: IUPHAR Review 30. Br. J. Pharmacol. 178, 489–514 (2021). · DOI
- Wang, J. et al. Druggable negative allosteric site of P2X3 receptors. Proc. Natl. Acad. Sci. 115, 4939–4944 (2018). · DOI
- Akira, K. & Toshimitsu, K. Structural basis for subtype-specific inhibition of the P2X7 receptor. eLife 5 (2016). · DOI
- Motoyuki, H. & Eric, G. Molecular mechanism of ATP binding and ion channel activation in P2X receptors. Nature 485, 207 (2012). · DOI
- McCarthy, A. E., Yoshioka, C. & Mansoor, S. E. Full-length P2X7 structures reveal how palmitoylation prevents channel desensitization. Cell 179, 659–670.e13 (2019). · DOI
- Mansoor, S. E. et al. X-ray structures define human P2X3 receptor gating cycle and antagonist action. Nature 538, 66 (2016). · DOI
- Shen, C. et al. Structural insights into the allosteric inhibition of P2X4 receptors. Nat. Commun. 14, 6437 (2023). · DOI · Paper page
- Bennetts, F. M., Mobbs, J. I., Ventura, S. & Thal, D. M. The P2X1 receptor as a therapeutic target. Purinergic Signal 18, 421 (2022). · DOI
- White, C. W. et al. Male contraception via simultaneous knockout of α1A-adrenoceptors and P2X1-purinoceptors in mice. Proc. Natl. Acad. Sci. USA. 110, 20825–20830 (2013). · DOI
- Mulryan, K. et al. Reduced vas deferens contraction and male infertility in mice lacking P2X1 receptors. Nature 403, 86 (2000). · DOI
- Darbousset, R. et al. P2X1 expressed on polymorphonuclear neutrophils and platelets is required for thrombosis in mice. Blood 124, 2575–2585 (2014). · DOI
- Oury, C. & Wéra, O. P2X1: a unique platelet receptor with a key role in thromboinflammation. Platelets 32, 902–908 (2021). · DOI
- del, Carmen, Gonzalez-Montelongo, M., Meades, J. L., Fortuny-Gomez, A., Fountain, S. J. & Neuropeptide, Y. Direct vasoconstrictor and facilitatory effects on P2X1 receptor-dependent vasoconstriction in human small abdominal arteries. Vascul. Pharmacol. 151, 107192 (2023). · DOI
- He, X. et al. P2X1 enhances leukemogenesis through PBX3-BCAT1 pathways. Leukemia 37, 265–275 (2023). · DOI
- Ledderose, S. et al. P2X1 and P2X7 receptor overexpression is a negative predictor of survival in muscle-invasive bladder cancer. Cancers 15, 2321 (2023). · DOI
- Tian, M. et al. Discovery and structure relationships of salicylanilide derivatives as potent, non-acidic P2X1 receptor antagonists. J. Med. Chem. 63, 6164–6178 (2020). · DOI
- Obrecht, A. S. et al. Identification of aurintricarboxylic acid as a potent allosteric antagonist of P2X1 and P2X3 receptors. Neuropharmacology 158, 107749 (2019). · DOI
- Kim, Y.-C. et al. Structure−activity relationships of pyridoxal phosphate derivatives as potent and selective antagonists of P2X1 receptors. J. Med. Chem. 44, 340–349 (2001). · DOI
- Jung, K.-Y., Cho, J.-H., Lee, J. S., Kim, H. J. & Kim, Y.-C. Synthesis and structure–activity relationships of carboxylic acid derivatives of pyridoxal as P2X receptor antagonists. Bioorg. Med. Chem. 21, 2643–2650 (2013). · DOI
- Jung, Y.-H. et al. Discovery of potent antiallodynic agents for neuropathic pain targeting P2X3 receptors. ACS Chem. Neurosci. 8, 1465 (2017). · DOI
- Hülsmann, M. et al. NF449, a novel picomolar potency antagonist at human P2X1 receptors. Eur. J. Pharmacol. 470, 1–7 (2003). · DOI
- Kassack, M. U. et al. Structure–activity relationships of analogues of NF449 confirm NF449 as the most potent and selective known P2X1 receptor antagonist. Eur. J. Med. Chem. 39, 345–357 (2004). · DOI
- Hohenegger, M. et al. Gsα-selective G protein antagonists. Proc. Natl. Acad. Sci. 95, 346–351 (1998). · DOI
- Farmer, L. K., Schmid, R. & Evans, R. J. Use of chimeras, point mutants, and molecular modeling to map the antagonist-binding site of 4,4′,4″,4‴-(Carbonylbis-(imino-5,1,3-benzenetriylbis(carbonylimino)))tetrakisbenzene-1,3-disulfonic Acid (NF449) at P2X1 receptors for ATP. J. Biol. Chem. 290, 1559–1569 (2015). · DOI
- Chataigneau, T., Lemoine, D. & Grutter, T. Exploring the ATP-binding site of P2X receptors. Front. Cell. Neurosci. 7, 273 (2013). · DOI
- Bianchi, B. R. et al. Pharmacological characterization of recombinant human and rat P2X receptor subtypes. Eur. J. Pharmacol. 376, 127–138 (1999). · DOI
- Varani, K. et al. Binding thermodynamic characterization of human P2X1 and P2X3 purinergic receptors. Biochem. Pharmacol. 75, 1198–1208 (2008). · DOI
- Roberts, J. A., Valente, M., Allsopp, R. C., Watt, D. & Evans, R. J. Contribution of the region Glu181 to Val200 of the extracellular loop of the human P2X1 receptor to agonist binding and gating revealed using cysteine scanning mutagenesis. J. Neurochem. 109, 1042–1052 (2009). · DOI
- Allsopp, R. C. & Evans, R. J. The intracellular amino terminus plays a dominant role in desensitization of ATP-gated P2X receptor ion channels. J. Biol. Chem. 286, 44691–44701 (2011). · DOI
- Sim, J. A., Broomhead, H. E. & North, R. A. Ectodomain lysines and suramin block of P2X1 receptors. J. Biol. Chem. 283, 29841 (2008). · DOI
- El-Ajouz, S., Ray, D., Allsopp, R. & Evans, R. Molecular basis of selective antagonism of the P2X1 receptor for ATP by NF449 and suramin: contribution of basic amino acids in the cysteine-rich loop. Br. J. Pharmacol. 165, 390–400 (2012). · DOI
- Catia, L. et al. Medicinal chemistry of P2X receptors: agonists and orthosteric antagonists. Curr. Med. Chem. 22, 915–928 (2015). · DOI
- Li, M. et al. Molecular mechanisms of human P2X3 receptor channel activation and modulation by divalent cation bound ATP. eLife 8 (2019). · DOI
- Kasuya, G. et al. Structural Insights into Divalent Cation Modulations of ATP-Gated P2X Receptor Channels. Cell Rep. 14, 932–944 (2016). · DOI
- Gucwa, M. et al. CMM—An enhanced platform for interactive validation of metal binding sites. Protein Sci. Publ. Protein Soc. 32, e4525 (2023). · DOI · Paper page
- Zheng, H. et al. CheckMyMetal: a macromolecular metal-binding validation tool. Acta Crystallogr. D: Struct. Biol. 73, 223–233 (2017). · DOI
- Li, M., Silberberg, S. D. & Swartz, K. J. Subtype-specific control of P2X receptor channel signaling by ATP and Mg2+. Proc. Natl. Acad. Sci. 110, E3455–E3463 (2013). · DOI
- Sheng, D. et al. Structural insights into the orthosteric inhibition of P2X receptors by non-ATP-analog antagonists. eLife 12 (2023). · DOI
- Kasuya, G. et al. Structural insights into the competitive inhibition of the ATP-gated P2X receptor channel. Nat. Commun. 8, 876 (2017). · DOI
- Jarvis, M. F. et al. A-317491, a novel potent and selective non-nucleotide antagonist of P2X3 and P2X2/3 receptors, reduces chronic inflammatory and neuropathic pain in the rat. Proc. Natl. Acad. Sci. USA. 99, 17179–17184 (2002). · DOI
- Scott, D. J. et al. A novel ultra-stable, monomeric green fluorescent protein for direct volumetric imaging of whole organs using CLARITY. Sci. Rep. 8, 667 (2018). · DOI
- Kampjut, D., Steiner, J. & Sazanov, L. A. Cryo-EM grid optimization for membrane proteins. iScience 24, 102139 (2021). · DOI
- Punjani, A., Rubinstein, J. L., Fleet, D. J. & Brubaker, M. A. cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination. Nat. Methods 14, 290–296 (2017). · DOI · Paper page
- Zivanov, J. et al. New tools for automated high-resolution cryo-EM structure determination in RELION-3. eLife 7, e42166 (2018). · DOI
- Varadi, M. et al. AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models. Nucleic Acids Res 50, D439–D444 (2022). · DOI · Paper page
- Meng, E. C. et al. UCSF ChimeraX: Tools for structure building and analysis. Protein Sci. Publ. Protein Soc. 32, e4792 (2023). · DOI
- Emsley, P., Lohkamp, B., Scott, W. G. & Cowtan, K. Features and development of Coot. Acta Crystallogr. D: Biol. Crystallogr. 66, 486–501 (2010). · DOI · Paper page
- Adams, P. D. et al. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D: Biol. Crystallogr. 66, 213–221 (2010). · DOI · Paper page
- Williams, C. J. et al. MolProbity: More and better reference data for improved all-atom structure validation. Protein Sci. Publ. Protein Soc. 27, 293–315 (2018). · DOI · Paper page
- Pravda, L. et al. MOLEonline: a web-based tool for analyzing channels, tunnels and pores (2018 update). Nucleic Acids Res. 46, W368–W373 (2018). · DOI
Metadata
- Authors
- Bennetts, F. M., Venugopal, H., Glukhova, A., Mobbs, J. I., Ventura, S., & Thal, D. M.
- Affiliations
- Australian Research Council (AU)
- Monash University (AU)
- Corresponding author
- Mobbs, Jesse I.
- Ventura, Sabatino
- Thal, David M.
- ORCID
- Venue
- Nature Communications
- Published
- 2024-09-28
- Volume
- 15
- Issue
- 1
- Pages
- 8418-8418
- ISSN
- 2041-1723 (ISSN-L)
- PMC
- PMC11439047
- OpenAlex
- W4402940303
- Cited by
- 14
- References
- 1
- Citations by year
- 2026: 10 · 2025: 3 · 2024: 1
- FWCI
- 3.97
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Nature Communications (publishedVersion, cc-by-nc-nd)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- Department of Health | National Health and Medical Research Council (1196951)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Physiology › Adenosine and Purinergic Signaling
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Receptor Mechanisms and Signaling
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Ion channel regulation and function
- Keywords
- P2X1 receptor, ligand-gated ion channels, ATP binding, NF449, receptor antagonists, closed state, ligand-receptor interactions, metal ion binding, site-directed mutagenesis, radioligand binding, calcium influx, therapeutic target, receptor structure
- MeSH terms
- Adenosine Triphosphate, Benzenesulfonates, Binding Sites, Humans, Ligands, Models, Molecular, Protein Binding, Cryoelectron Microscopy, HEK293 Cells, Receptors, Purinergic P2X1, Purinergic P2X Receptor Antagonists
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review