The DOI matches its Crossref record; 70 of the 70 references it cites were found in a registry or an index.
Prolonged drought imparts lasting compositional changes to the rice root microbiome
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Citations
Cites
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Love, M. I., Huber, W., & Anders, S. (2014) · Genome Biology · doi:10.1186/s13059-014-0550-8 · Cited by 95,106
Trimmomatic: a flexible trimmer for Illumina sequence data
Bolger, A. M., Lohse, M., & Usadel, B. (2014) · Bioinformatics · doi:10.1093/bioinformatics/btu170 · Cited by 65,548
QIIME allows analysis of high-throughput community sequencing data
Caporaso, J. G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F. D., Costello, E. K., Fierer, N., Peña, A. G., Goodrich, J. K., Gordon, J. I., et al. (2010) · Nature Methods · doi:10.1038/nmeth.f.303 · Cited by 34,887
Wickham, H. (2016) · Use R! · doi:10.1007/978-3-319-24277-4 · Cited by 33,115
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
Quast, C., Pruesse, E., Yilmaz, P., Gerken, J., Schweer, T., Yarza, P., Peplies, J., & Glöckner, F. O. (2012) · Nucleic Acids Research · doi:10.1093/nar/gks1219 · Cited by 33,055
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Bankevich, A., Nurk, S., Antipov, D., Gurevich, A. A., Dvorkin, M., Kulikov, A. S., Lesin, V. M., Nikolenko, S. I., Pham, S., Prjibelski, A. D., et al. (2012) · Journal of Computational Biology · doi:10.1089/cmb.2012.0021 · Cited by 25,987
lmerTest Package: Tests in Linear Mixed Effects Models
Kuznetsova, A., Brockhoff, P. B., & Christensen, R. H. B. (2017) · Journal of Statistical Software · doi:10.18637/jss.v082.i13 · Cited by 24,346
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
McMurdie, P. J., & Holmes, S. (2013) · PLoS ONE · doi:10.1371/journal.pone.0061217 · Cited by 21,322
Search and clustering orders of magnitude faster than BLAST
Edgar, R. C. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btq461 · Cited by 20,826
Prokka: rapid prokaryotic genome annotation
Seemann, T. (2014) · Bioinformatics · doi:10.1093/bioinformatics/btu153 · Cited by 18,818
Cited by
Climate change impacts on plant pathogens, food security and paths forward
Singh, B. K., Delgado-Baquerizo, M., Egidi, E., Guirado, E., Leach, J. E., Liu, H., & Trivedi, P. (2023) · Nature Reviews Microbiology · doi:10.1038/s41579-023-00900-7 · Cited by 1,334
The root microbiome: Community assembly and its contributions to plant fitness
Bai, B., Liu, W., Qiu, X., Zhang, J., Zhang, J., & Bai, Y. (2022) · Journal of Integrative Plant Biology · doi:10.1111/jipb.13226 · Cited by 389
Dissanayake, P. D., Palansooriya, K. N., Sang, M. K., Oh, D. X., Park, J., Hwang, S. Y., Igalavithana, A. D., Gu, C., & Ok, Y. S. (2022) · Soil Use and Management · doi:10.1111/sum.12804 · Cited by 57
Metadata
- Authors
- Santos-Medellín, C., Liechty, Z., Edwards, J., Nguyen, B., Huang, B., Weimer, B. C., & Sundaresan, V.
- Venue
- Nature Plants
- Published
- 2021-07-22
- Volume
- 7
- Issue
- 8
- Pages
- 1065-1077
- ISSN
- 2055-026X (ISSN-L)
- 2055-0278
- OpenAlex
- W3185927953
- Cited by
- 285
- References
- 70
- FWCI
- 24.47
- Type
- journal article
- Language
- en
- Open access
- closed
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- CoChat. (2026). Citation check: Prolonged drought imparts lasting compositional changes to the rice root microbiome. https://app.cochat.ai/papers/10.1038/s41477-021-00967-1
- The paper
- Santos-Medellín, C., Liechty, Z., Edwards, J., Nguyen, B., Huang, B., Weimer, B. C., & Sundaresan, V. (2021). Prolonged drought imparts lasting compositional changes to the rice root microbiome. Nature Plants. https://doi.org/10.1038/s41477-021-00967-1
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
