The DOI matches its Crossref record; 121 of the 121 references it cites were found in a registry or an index.
Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues
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Citations
Cites
Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence
Cole, S. T., Brosch, R., Parkhill, J., Garnier, T., Churcher, C., Harris, D., Gordon, S. V., Eiglmeier, K., Gas, S., Barry, C. E., et al. (1998) · Nature · doi:10.1038/31159 · Cited by 7,847
Kraken: ultrafast metagenomic sequence classification using exact alignments
Wood, D. E., & Salzberg, S. L. (2014) · Genome Biology · doi:10.1186/gb-2014-15-3-r46 · Cited by 4,521
Docker: lightweight Linux containers for consistent development and deployment
Merkel, D. (2014) · Linux journal · Cited by 3,191
Singularity: Scientific containers for mobility of compute
Kurtzer, G. M., Sochat, V., & Bauer, M. W. (2017) · PLOS ONE · doi:10.1371/journal.pone.0177459 · Cited by 2,740
Bioconda: sustainable and comprehensive software distribution for the life sciences
The Bioconda Team, Grüning, B., Dale, R., Sjödin, A., Chapman, B. A., Rowe, J., Tomkins-Tinch, C. H., Valieris, R., & Köster, J. (2018) · Nature Methods · doi:10.1038/s41592-018-0046-7 · Cited by 1,641
Centrifuge: rapid and sensitive classification of metagenomic sequences
Kim, D., Song, L., Breitwieser, F. P., & Salzberg, S. L. (2016) · Genome Research · doi:10.1101/gr.210641.116 · Cited by 1,438
Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans
Comas, I., Coscolla, M., Luo, T., Borrell, S., Holt, K. E., Kato-Maeda, M., Parkhill, J., Malla, B., Berg, S., Thwaites, G., et al. (2013) · Nature Genetics · doi:10.1038/ng.2744 · Cited by 1,025
Self-citationWalker, T. M., Ip, C. L., Harrell, R. H., Evans, J. T., Kapatai, G., Dedicoat, M. J., Eyre, D. W., Wilson, D. J., Hawkey, P. M., Crook, D. W., et al. (2013) · The Lancet Infectious Diseases · doi:10.1016/s1473-3099(12)70277-3 · Cited by 918
Self-citationHelb, D., Jones, M., Story, E., Boehme, C., Wallace, E., Ho, K., Kop, J., Owens, M. R., Rodgers, R., Banada, P., et al. (2010) · Journal of Clinical Microbiology · doi:10.1128/jcm.01463-09 · Cited by 914
Whole-Genome Sequencing and Social-Network Analysis of a Tuberculosis Outbreak
Gardy, J. L., Johnston, J. C., Sui, S. J. H., Cook, V. J., Shah, L., Brodkin, E., Rempel, S., Moore, R., Zhao, Y., Holt, R., et al. (2011) · New England Journal of Medicine · doi:10.1056/nejmoa1003176 · Cited by 712
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Metadata
- Authors
- Meehan, C. J., Goig, G. A., Kohl, T. A., Verboven, L., Dippenaar, A., Ezewudo, M., Farhat, M. R., Guthrie, J. L., Laukens, K., Miotto, P., Ofori-Anyinam, B., Dreyer, V., Supply, P., Suresh, A., Utpatel, C., van Soolingen, D., Zhou, Y., Ashton, P. M., Brites, D., Cabibbe, A. M., de Jong, B. C., de Vos, M., Menardo, F., Gagneux, S., Gao, Q., Heupink, T. H., Liu, Q., Loiseau, C., Rigouts, L., Rodwell, T. C., Tagliani, E., Walker, T. M., Warren, R. M., Zhao, Y., Zignol, M., Schito, M., Gardy, J., Cirillo, D. M., Niemann, S., Comas, I., & Van Rie, A.
- Venue
- Nature Reviews Microbiology
- Published
- 2019-06-17
- Volume
- 17
- Issue
- 9
- Pages
- 533-545
- ISSN
- 1740-1526 (ISSN-L)
- 1740-1534
- OpenAlex
- W2951825561
- Cited by
- 422
- References
- 121
- FWCI
- 9.44
- Type
- journal article
- Language
- en
- Open access
- closed
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Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
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- This page
- CoChat. (2026). Citation check: Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues. https://app.cochat.ai/papers/10.1038/s41579-019-0214-5
- The paper
- Meehan, C. J., Goig, G. A., Kohl, T. A., Verboven, L., Dippenaar, A., Ezewudo, M., Farhat, M. R., Guthrie, J. L., Laukens, K., Miotto, P., Ofori-Anyinam, B., Dreyer, V., Supply, P., Suresh, A., Utpatel, C., van Soolingen, D., Zhou, Y., Ashton, P. M., Brites, D., . . . Van Rie, A. (2019). Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues. Nature Reviews Microbiology. https://doi.org/10.1038/s41579-019-0214-5
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
