The DOI matches its Crossref record; 280 of the 286 references it cites were found in a registry or an index.
Molecular mechanisms underlying nucleotide repeat expansion disorders
Open accessAbstract
The human genome contains over one million short tandem repeats. Expansion of a subset of these repeat tracts underlies over fifty human disorders, including common genetic causes of amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (C9orf72), polyglutamine-associated ataxias and Huntington disease, myotonic dystrophy, and intellectual disability disorders such as Fragile X syndrome. In this Review, we discuss the four major mechanisms by which expansion of short tandem repeats causes disease: loss of function through transcription repression, RNA-mediated gain of function through gelation and sequestration of RNA-binding proteins, gain of function of canonically translated repeat-harbouring proteins, and repeat-associated non-AUG translation of toxic repeat peptides. Somatic repeat instability amplifies these mechanisms and influences both disease age of onset and tissue specificity of pathogenic features. We focus on the crosstalk between these disease mechanisms, and argue that they often synergize to drive pathogenesis. We also discuss the emerging native functions of repeat elements and how their dynamics might contribute to disease at a larger scale than currently appreciated. Lastly, we propose that lynchpins tying these disease mechanisms and native functions together offer promising therapeutic targets with potential shared applications across this class of human disorders.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“Furthermore, ALS is characterized by aberrant RNA processing and nucleocytoplasmic transport defects, which are often linked to mutations in C9orf72 and other RNA-binding proteins.193”
From Antiageing strategy for neurodegenerative diseases: from mechanisms to clinical advances (2025) · cites this paper as [193]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Initial sequencing and analysis of the human genome
International Human Genome Sequencing Consortium, Whitehead Institute for Biomedical Research, C. F. G. R., Lander, E. S., Linton, L. M., Birren, B., Nusbaum, C., Zody, M. C., Baldwin, J., Devon, K., Dewar, K., et al. (2001) · Nature · doi:10.1038/35057062 · Cited by 24,216
Verkerk, A. J. M. H., Pieretti, M., Sutcliffe, J. S., Fu, Y.-H., Kuhl, D. P. A., Pizzuti, A., Reiner, O., Richards, S., Victoria, M. F., Zhang, F., et al. (1991) · Cell · doi:10.1016/0092-8674(91)90397-h · Cited by 3,481
Regulated Translation Initiation Controls Stress-Induced Gene Expression in Mammalian Cells
Harding, H. P., Novoa, I., Zhang, Y., Zeng, H., Wek, R. C., Schapira, M., & Ron, D. (2000) · Molecular Cell · doi:10.1016/s1097-2765(00)00108-8 · Cited by 3,344
An Integrated Stress Response Regulates Amino Acid Metabolism and Resistance to Oxidative Stress
Harding, H. P., Zhang, Y., Zeng, H., Novoa, I., Lu, P. D., Calfon, M. A., Sadri, N., Yun, C., Popko, B., Paules, R. S., et al. (2003) · Molecular Cell · doi:10.1016/s1097-2765(03)00105-9 · Cited by 3,336
Mangiarini, L., Sathasivam, K., Seller, M., Cozens, B., Harper, A., Hetherington, C., Lawton, M., Trottier, Y., Lehrach, H., Davies, S. W., et al. (1996) · Cell · doi:10.1016/s0092-8674(00)81369-0 · Cited by 3,073
Androgen receptor gene mutations in X-linked spinal and bulbar muscular atrophy
Spada, A. L., Wilson, E. M., Lubahn, D. B., Harding, A., & Fischbeck, K. (1991) · Nature · doi:10.1038/352077a0 · Cited by 2,801
Friedreich's Ataxia: Autosomal Recessive Disease Caused by an Intronic GAA Triplet Repeat Expansion
Campuzano, V., Montermini, L., Moltò, M. D., Pianese, L., Cossée, M., Cavalcanti, F., Monros, E., Rodius, F., Duclos, F., Monticelli, A., et al. (1996) · Science · doi:10.1126/science.271.5254.1423 · Cited by 2,786
The mechanism of eukaryotic translation initiation and principles of its regulation
Jackson, R. J., Hellen, C. U. T., & Pestova, T. V. (2010) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2838 · Cited by 2,759
The integrated stress response
Pakos‐Zebrucka, K., Koryga, I., Mnich, K., Ljujic, M., Samali, A., & Gorman, A. M. (2016) · The EMBO Reports · doi:10.15252/embr.201642195 · Cited by 2,659
Phase transitions in the assembly of multivalent signalling proteins
Li, P., Banjade, S., Cheng, H., Kim, S., Chen, B., Guo, L., Llaguno, M. C., Hollingsworth, J. V., King, D., Banani, S. F., et al. (2012) · Nature · doi:10.1038/nature10879 · Cited by 2,565
Research works printed but not linked: 1
- Wells, R. D. & Ashizawa, T. Genetic Instabilities and Neurological Diseases. (Elsevier, 2006).
Cited by
Sorted by citations
Items 301–360 of 360
Liu, Y., & Xia, K. (2025) · Genes · doi:10.3390/genes16040406
Tang, Z., Övünç, S. S., Iwase, R., Mehinovic, E., Thomas, S., Ulibarri, J., Li, Z., Baldridge, D., Cruchaga, C., Johnson, M., et al. (2025) · medRxiv · doi:10.1101/2025.04.18.25325809
Self-citationMASTR-Seq: Multiplexed Analysis of Short Tandem Repeats with SequencingPreprint
Chuanbin, S., Ryu, H.-S., Chandradoss, K. R., Malachowski, T., Boya, R., Nguyen, H. E., Mazzoni, E. O., Brennand, K., & Phillips‐Cremins, J. E. (2025) · SSRN Electronic Journal · doi:10.2139/ssrn.5248535
Research advances in R-loop functions and detection technologies
He, Q., & Yao, H. (2025) · Scientia Sinica Vitae · doi:10.1360/ssv-2025-0151
Current understanding of skeletal muscle repeat expansion disorders
Boivin, M., & Ravenscroft, G. (2025) · Current Opinion in Neurology · doi:10.1097/wco.0000000000001394
Shioda, N. (2025) · YAKUGAKU ZASSHI · doi:10.1248/yakushi.24-00209-2
Biomarkers for Proteostasis Disruption: An Overview
Prakash, D., & Bisht, D. (2025) · Springer eBooks · doi:10.1007/978-981-96-6202-9_8
Roy, S., & Srivatsan, S. G. (2025) · Bioconjugate Chemistry · doi:10.1021/acs.bioconjchem.5c00157
Lujumba, I., Adam, Y., Jam, H. Z., Isewon, I., Monnakgotla, N., Li, Y., Onyido, B., Fredrick, K., Adegoke, F., Emmanuel, J., et al. (2025) · Nature Protocols · doi:10.1038/s41596-025-01231-y
Mechanistic insights into RAN translation within the Huntingtin coding sequencePreprint
Krans, A., Albertson, R. M., Maltby, C. J., & Todd, P. K. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.09.02.673827
Self-citationBirth–Death Dynamics of Microsatellites: Mechanistic Insights from Orthologous Loci in Felidae
Zhang, W., Zhang, M. H., & Liu, H. (2025) · Genes · doi:10.3390/genes16091115
The terms "dominant" and "recessive" should be avoided due to gene therapy
Gamisonia, A. M., & Rebrikov, D. V. (2025) · Bulletin of Russian State Medical University · doi:10.24075/brsmu.2025.055
Zhang, L., Shibata, T., Murata, A., Takashima, Y., & Nakatani, K. (2025) · Biochemistry · doi:10.1021/acs.biochem.5c00501
Additional file 1 of RExPRT: a machine learning tool to predict pathogenicity of tandem repeat loci
Fazal, S., Danzi, M. C., Xu, I. R. L., Kobren, S. N., Sunyaev, S. R., Reuter, C. M., Marwaha, S., Wheeler, M. T., Dolzhenko, E., Lucas, F., et al. (2024) · Figshare · doi:10.6084/m9.figshare.25123993
Additional file 2 of RExPRT: a machine learning tool to predict pathogenicity of tandem repeat loci
Fazal, S., Danzi, M. C., Xu, I. R. L., Kobren, S. N., Sunyaev, S. R., Reuter, C. M., Marwaha, S., Wheeler, M. T., Dolzhenko, E., Lucas, F., et al. (2024) · Figshare · doi:10.6084/m9.figshare.25124103
Rapún-Araiz, B., Euba, B., Mell, J. C., Toledo-Arana, A., & Garmendia, J. (2025) · Nucleic Acids Research · doi:10.1093/nar/gkaf1332
Hashemi, S. M. J. (2026) · Research Square · doi:10.21203/rs.3.rs-8456938/v1
Perera, J. D. R., Thadke, S. A., Thrikawala, S. W., Dhami, I., Hridya, V. M., Mukherjee, A., Paul, A., Wilson, W. D., Tan, K. W. R., Chan, N. Z. W., et al. (2026) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2507065123
Sakamoto, S., Ito, H., Hasumi, M., Morisaki, T., Hirano, M., Nagai, Y., Stasevich, T. J., & TAGUCHI, H. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.01.25.700793
Zong, Z., Guan, H., Huang, M., & Guo, J. (2026) · Genes & Diseases · doi:10.1016/j.gendis.2026.102066
DGCR8 regulates multiple processes of transcription coupled nucleotide excision repair
Watanabe, T., Yoshinami, D., Yamasaki, H., Tanaka, Y., Ohtsuka, M., & Taniguchi, T. (2026) · Scientific Reports · doi:10.1038/s41598-026-38338-5
Repeat expansions in C9orf72 rewire the 3D chromatin landscape in ALSPreprint
Avila, T. U., Wang, J., Adams, L. O., Hu, E., Beltrán, A. H., Kozlenkov, A., Urhekar, S., Gonzalez, A. M., Lee, H.-G., Calabrese, J. M., et al. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.02.09.704902
Emani, L. S., Rao, J. K., Jagadeesh Kumar, D., Narayan, P., Mullur, G., Avula, P., & Rao, K. S. J. (2026) · Journal of Alzheimer s Disease Reports · doi:10.1177/25424823261429082
MASTR-seq enables multiplexed analysis of short tandem repeats with sequencing
Chuanbin, S., Ryu, H.-S., Chandradoss, K. R., Malachowski, T., Boya, R., Zhou, L., Nguyen, H. E., Mazzoni, E. O., Brennand, K., & Phillips‐Cremins, J. E. (2026) · Cell Reports Methods · doi:10.1016/j.crmeth.2026.101341
Thalib, H. I., Khan, S., Shaikh, A. H., Alawi, K. M., Alabdrabalrasol, Z. H., Mehveen, S., Haidar, S., Hassan, F. E., & Shaik, N. A. (2026) · Genetic Testing and Molecular Biomarkers · doi:10.1177/19450265261434900
Zhang, F., Chen, Y. E., Chen, S., Xia, H., Zhang, Y., Chen, X., Wang, B., Ji, J., Cen, Z., & Luo, W. (2026) · Movement Disorders · doi:10.1002/mds.70270
Loureiro, J. R., Castro, A. F., Figueiredo, A. S., Eufrásio, A., Dhingra, A., Galhardo, M., Marcelino, H., Rodrigues, C. C., Sampaio, P., Azevedo, M. M., et al. (2026) · Cell Reports · doi:10.1016/j.celrep.2026.117146 · Cited by 1
Characterizing the interplay between DNA : RNA hybrids and genome stability
Mangione, R. M. (2024) · theses.fr (ABES) · doi:10.70675/9ac3610bz2f0ez4ce2zac24zd9863979d34e
Distinct cellular effects of myotonic dystrophy type 2 repeat-associated non-AUG tetrapeptides
Marzullo, M., Simone, A. D., Terribili, M., Salvio, M. D., Mengistu, D. Y., Somma, M. P., D'Amico, R., Canettieri, G., Cestra, G., & Ciapponi, L. (2026) · Disease Models & Mechanisms · doi:10.1242/dmm.052729
Novel STRs on chromosome 21 and genetic distribution in the Han population
Fang, X., Jiang, S., Liu, D., Wu, D., 楼迪栋, & Zhang, S. (2026) · International Journal of Legal Medicine · doi:10.1007/s00414-026-03804-2
Harnessing CRISPR and Nanopore Systems for Advanced Biosensing: A Review
Boteju, S. V. M. W., Tan, C. S., & Ming, D. (2026) · IEEE Sensors Journal · doi:10.1109/jsen.2026.3690556
Lian, Y., Zhong, S., Huang, J., Huang, L., Li, Y., Liang, J., Wang, X., & Ding, J. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.05.11.723935
Recognizing repeat expansion disorders in clinical practice
Tinkle, M. B. (2026) · Journal of the American Association of Nurse Practitioners · doi:10.1097/jxx.0000000000001310
Niewiadomska, D., Piasecka, A., Baud, A., Broniarek, I., & Sobczak, K. (2026) · Nucleic Acids Research · doi:10.1093/nar/gkag569
Alaqeeli, O. (2026) · Clinical Parkinsonism & Related Disorders · doi:10.1016/j.prdoa.2026.100471
Yadav, P., Malik, I., & Joshi, H. (2026) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2026.153101
Self-citationBelgrad, J., Greco, T. M., Sapp, E., Summers, A., O’Reilly, D., Luu, E., Hutton, J. E., Yamada, N., Fakih, H. H., Furgal, R. C., et al. (2026) · SSRN Electronic Journal · doi:10.2139/ssrn.7174781 · Cited by 1
LINE-1 Retrotransposons and Amyotrophic Lateral Sclerosis
Korošec, T., Rogelj, B., & Župunski, V. (2026) · International Journal of Molecular Sciences · doi:10.3390/ijms27146244
Physicochemical principles of RNA-mediated crowding
Fiorentino, J., Monti, M., Broglia, L., & Tartaglia, G. G. (2026) · Current Opinion in Structural Biology · doi:10.1016/j.sbi.2026.103334
Sakamoto, S., Ito, H., Hasumi, M., Morisaki, T., Hirano, M., Niwa, T., Nagai, Y., Stasevich, T. J., & Taguchi, H. (2026) · Nucleic Acids Research · doi:10.1093/nar/gkag730
Fergelot, P., Boury, C., Penaud, B., Giguet-Valard, A.-G., Vincent, M., Mouzat, K., Raclet, V., Baudier, M.-P., Rooryck, C., Arveiler, B., et al. (2026) · Scientific Reports · doi:10.1038/s41598-026-64095-6
Wu, Y., Li, L., Tian, J., Liu, L., Du, K., Shao, Z., Cheng, T., Cao, X., & Wang, T. (2026) · International Journal of Molecular Sciences · doi:10.3390/ijms27156986
Autophagy at the Crossroads of Protein and RNA Toxicity in Repeat Expansion Cerebellar Ataxias
Tortoriello, S., Rossi, S., Valle, I. D., D’Ambrosi, N., & Cozzolino, M. (2026) · Cells · doi:10.3390/cells15151411
Resolving the dynamics of atypical DNA structures using smFRET
Erie, D. A., LeBlanc, S. J., & Weninger, K. (2026) · Current Opinion in Structural Biology · doi:10.1016/j.sbi.2026.103351
Swarup, V., Deepika, D., Garg, D., & Srivastava, A. K. (2026) · Clinical Pharmacology & Therapeutics · doi:10.1002/cpt.70445
Mapping subcellular microenvironments using oligonucleotide-directed proximity labeling
Schactler, S. A., Skiados, N. G., Gajendragadkar, A. A., DeLeon, L. E., & Shechner, D. M. (2026) · Current Opinion in Chemical Biology · doi:10.1016/j.cbpa.2026.102743 · Cited by 1
Arif, R., & Castelló, A. (2026) · Current Opinion in Structural Biology · doi:10.1016/j.sbi.2026.103362
Chemical Biology 2025: Highlights From the Ch/Bi145 Course at Caltech
Ashton-Rickardt, G. P., Chung, D. K., Corman, S. A., Gilbert, M. S., Green, Z. B., Hengartner, E. R., Hou, J., Kang, D., Konsler, J. K., Kuleshova, I. D., et al. (2026) · ChemBioChem · doi:10.1002/cbic.70485
Biosensors for Detecting Trinucleotide Repeat Expansions
Luganskaya, P. S., Perepelitsa, E. S., Рубель, А. А., & Rubel, M. S. (2026) · Russian Journal of Bioorganic Chemistry · doi:10.1134/s1068162026603514
Somatic mosaicism in the brain: linking development, ageing and neurodegeneration
Zhou, Z., & Walsh, C. A. (2026) · Nature Reviews Neurology · doi:10.1038/s41582-026-01268-x
Alzheimer’s disease: genetic background in the era of next-generation sequencing technologies
Lukyova, L., Zaťková, A., Minařík, J., Holesova, Z., Budiš, J., Kucharík, M., Beneš, V., Gazdarica, J., & Szemes, T. (2026) · Brain Communications · doi:10.1093/braincomms/fcag332
Patel, M., Das, S., Kumari, A. P., & Kumar, A. (2026) · Molecular Neurobiology · doi:10.1007/s12035-026-06209-9
Rubiu, R., Trost, B., Kébir, O., Leblond, C. S., Bourgeron, T., & Chaumette, B. (2026) · Biological Psychiatry Global Open Science · doi:10.1016/j.bpsgos.2026.100836
Genetic Testing: Basic Principles for the Pediatrician
Trapani, J. B., Phillips, J. A., & Ward, S. K. (2026) · Current Pediatrics Reports · doi:10.1007/s40124-026-00396-8
Management of fragile X-associated tremor ataxia syndrome: a review for clinicians
Hall, D. A., González, D. A., Klusek, J., Todd, P. K., O’Keefe, J. A., Maltman, N., Montanaro, F. A. M., Protic, D. D., Scorr, L., Malik, R., et al. (2026) · Frontiers in Neurology · doi:10.3389/fneur.2026.1870779
Self-citationMorandi, L., Casadei, F., Fanti, D., Bonan, L., Ravaioli, F., Palombo, F., Fiorentino, A., Pasqua, S. D., Vacchiano, V., Avoni, P., et al. (2026) · NAR Genomics and Bioinformatics · doi:10.1093/nargab/lqag117
Soltani, N. S., Zamiri, B., Shafieeha, A., Moosavi‐Movahedi, A. A., Laß, J., Klein, C., Westenberger, A., Trinh, J., Hönes, G. S., & Pearson, C. E. (2026) · PLoS ONE · doi:10.1371/journal.pone.0360550
OUYANG, C.-Z., Sun, K., Wang, F., Ye, F., Zhu, L., Dong, L., Bai, Y., Cheng, Z., Wu, M., Crickmore, N., et al. (2026) · Nucleic Acids Research · doi:10.1093/nar/gkag1058
Structural basis for repeat-associated non-AUG translation initiation on C9orf72 mRNAPreprint
Kaufhold, R. T., Dong, W., Purwar, I., Saladin, B. A., Wieland, C. M., Krans, A., Laimon-Thomson, E. L., Malik, I., Leskaj, S., Havilio, T., et al. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.10.25.761709
Self-citation
Metadata
- Authors
- Malik, I., Kelley, C. P., Wang, E. T., & Todd, P. K.
- Affiliations
- University of Michigan (US)
- University of Florida (US)
- Corresponding author
- Todd, Peter K.
- Venue
- Nature Reviews Molecular Cell Biology
- Published
- 2021-06-17
- Volume
- 22
- Issue
- 9
- Pages
- 589-607
- ISSN
- 1471-0072 (ISSN-L)
- 1471-0080
- PMC
- PMC9612635
- OpenAlex
- W3170696603
- Cited by
- 363
- References
- 286
- Citations by year
- 2026: 71 · 2025: 77 · 2024: 92 · 2023: 66 · 2022: 48 · 2021: 9
- FWCI
- 8.06
- Type
- journal article
- Language
- en
- Update notices
- correction (2021-07-06)
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Nature Reviews Molecular Cell Biology (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- U.S. Department of Veterans Affairs (I01 BX004842)
- National Institute on Aging (R01AG058636)
- National Institute of Neurological Disorders and Stroke (R01NS112291, R01NS086810, R01NS114253, R01NS099280)
- Eunice Kennedy Shriver National Institute of Child Health and Human Development (P50HD104463)
- Topics
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Genetic Neurodegenerative Diseases
- Health Sciences › Medicine › Clinical Neurology › Amyotrophic Lateral Sclerosis Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetics and Neurodevelopmental Disorders
- Keywords
- microsatellite markers, C9orf72, amyotrophic lateral sclerosis, frontotemporal dementia, Huntington's disease, myotonic dystrophy, fragile X syndrome, transcriptional repression, repeat-associated non-AUG translation, age of onset, tissue specificity, therapeutic target
- MeSH terms
- R-Loop Structures, Animals, Humans, Mutation, Organ Specificity, RNA, Protein Biosynthesis, RNA-Binding Proteins, Neurodegenerative Diseases, Gene Silencing, DNA Repeat Expansion, Genomic Instability
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review