Cited by 1,775Single-cell and spatial transcriptomicsNeuroscience and Neuropharmacology ResearchNeurogenesis and neuroplasticity mechanisms

The DOI matches its Crossref record; 92 of the 92 references it cites were found in a registry or an index.

Conserved cell types with divergent features in human versus mouse cortex

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Published version of a preprint

Abstract

Elucidating the cellular architecture of the human cerebral cortex is central to understanding our cognitive abilities and susceptibility to disease. Here we used single-nucleus RNA-sequencing analysis to perform a comprehensive study of cell types in the middle temporal gyrus of human cortex. We identified a highly diverse set of excitatory and inhibitory neuron types that are mostly sparse, with excitatory types being less layer-restricted than expected. Comparison to similar mouse cortex single-cell RNA-sequencing datasets revealed a surprisingly well-conserved cellular architecture that enables matching of homologous types and predictions of properties of human cell types. Despite this general conservation, we also found extensive differences between homologous human and mouse cell types, including marked alterations in proportions, laminar distributions, gene expression and morphology. These species-specific features emphasize the importance of directly studying human brain.

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Crossref · 10.1038/s41586-019-1506-7

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  1. Lorente de Nó, R. La corteza cerebral del ratón. Trab. Lab. Invest. Bio. (Madrid) 20, 41–78 (1922).

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Metadata

Authors
Hodge, R. D., Bakken, T. E., Miller, J. A., Smith, K. A., Barkan, E. R., Graybuck, L. T., Close, J. L., Long, B., Johansen, N., Penn, O., Yao, Z., Eggermont, J., Höllt, T., Levi, B. P., Shehata, S. I., Aevermann, B., Beller, A., Bertagnolli, D., Brouner, K., Casper, T., Cobbs, C., Dalley, R., Dee, N., Ding, S.-L., Ellenbogen, R. G., Fong, O., Garren, E., Goldy, J., Gwinn, R. P., Hirschstein, D., Keene, C. D., Keshk, M., Ko, A. L., Lathia, K., Mahfouz, A., Maltzer, Z., McGraw, M., Nguyen, T. N., Nyhus, J., Ojemann, J. G., Oldre, A., Parry, S., Reynolds, S., Rimorin, C., Shapovalova, N. V., Somasundaram, S., Szafer, A., Thomsen, E. R., Tieu, M., Quon, G., Scheuermann, R. H., Yuste, R., Sunkin, S. M., Lelieveldt, B., Feng, D., Ng, L., Bernard, A., Hawrylycz, M., Phillips, J. W., Tasic, B., Zeng, H., Jones, A. R., Koch, C., & Lein, E. S.
Affiliations
  • Allen Institute for Brain Science (US)
  • University of California, Davis (US)
  • Leiden University Medical Center (NL)
  • J. Craig Venter Institute (US)
  • University of Washington (US)
  • Swedish Medical Center (US)
  • Columbia University (US)
Corresponding author
Lein, Ed S.
Venue
Nature
Published
2019-08-21
Volume
573
Issue
7772
Pages
61-68
ISSN
  • 0028-0836 (ISSN-L)
  • 1476-4687
OpenAlex
W2969948459
Cited by
1,775
References
89
Citations by year
2026: 199 · 2025: 242 · 2024: 275 · 2023: 269 · 2022: 235 · 2021: 289 · 2020: 212 · 2019: 43
FWCI
64.09
Type
journal article
Language
en
Open access
Locations
  • Nature (publishedVersion)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
  • PubMed (publishedVersion)
  • Europe PMC (PubMed Central) (acceptedVersion)
  • PubMed Central (acceptedVersion)
  • Data Archiving and Networked Services (DANS) (submittedVersion)
  • RePEc: Research Papers in Economics (submittedVersion)
  • Leiden Repository (Leiden University) (submittedVersion)
  • eScholarship (California Digital Library) (submittedVersion)
Funders
  • University of Washington
  • Nederlandse Organisatie voor Wetenschappelijk Onderzoek (12720, 12721)
  • National Institutes of Health (5u01mh114812-03, MH114812-02)
  • National Institute of Mental Health (U01MH105982, U01MH114812, U19MH114830)
  • National Institute of General Medical Sciences (T32GM008497)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Single-cell and spatial transcriptomics
  • Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Neuroscience and Neuropharmacology Research
  • Life Sciences › Neuroscience › Developmental Neuroscience › Neurogenesis and neuroplasticity mechanisms
Keywords
human cerebral cortex, middle temporal gyrus, cortical cell types, excitatory neurons, inhibitory neurons, single-nucleus RNA sequencing, human-mouse comparison, cortical laminar organization, species differences, neuronal morphology, gene expression
MeSH terms
RNA-Seq, Adolescent, Adult, Aged, Animals, Astrocytes, Cerebral Cortex, Biological Evolution, Female, Humans, Male, Middle Aged, Neural Inhibition, Neurons, Species Specificity, Principal Component Analysis, Mice, Young Adult, Single-Cell Analysis, Transcriptome

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