The DOI matches its Crossref record; 49 of the 57 references it cites were found in a registry or an index.
Deep learning enables rapid identification of potent DDR1 kinase inhibitors
Abstract
We have developed a deep generative model, generative tensorial reinforcement learning (GENTRL), for de novo small-molecule design. GENTRL optimizes synthetic feasibility, novelty, and biological activity. We used GENTRL to discover potent inhibitors of discoidin domain receptor 1 (DDR1), a kinase target implicated in fibrosis and other diseases, in 21 days. Four compounds were active in biochemical assays, and two were validated in cell-based assays. One lead candidate was tested and demonstrated favorable pharmacokinetics in mice.
Overview
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
Citations
Cites
Adam: A Method for Stochastic Optimization
Kingma, D. P., & Ba, J. (2014) · arXiv · doi:10.48550/arxiv.1412.6980 · Cited by 98,946
Learning Phrase Representations using RNN Encoder–Decoder for Statistical Machine Translation
Cho, K., van Merrienboer, B., Gulcehre, C., Bahdanau, D., Bougares, F., Schwenk, H., & Bengio, Y. (2014) · Proceedings of the 2014 Conference on Empirical Methods in Natural Language Processing (EMNLP) · doi:10.3115/v1/d14-1179 · Cited by 25,545
GAN(Generative Adversarial Nets)
淳司, 柴. (2017) · Journal of Japan Society for Fuzzy Theory and Intelligent Informatics · doi:10.3156/jsoft.29.5_177_2 · Cited by 20,507
UFF, a full periodic table force field for molecular mechanics and molecular dynamics simulations
Rappé, A. K., Casewit, C. J., Colwell, K. S., Goddard, W. A., & Skiff, W. M. (1992) · Journal of the American Chemical Society · doi:10.1021/ja00051a040 · Cited by 10,603
Simple Statistical Gradient-Following Algorithms for Connectionist Reinforcement Learning
Williams, R. J. (1992) · Machine Learning · doi:10.1007/bf00992696 · Cited by 8,608
How to improve R&D productivity: the pharmaceutical industry's grand challenge
Paul, S. M., Mytelka, D. S., Dunwiddie, C. T., Persinger, C. C., Munos, B. H., Lindborg, S. R., & Schacht, A. L. (2010) · Nature Reviews Drug Discovery · doi:10.1038/nrd3078 · Cited by 3,566
A Nonlinear Mapping for Data Structure Analysis
Sammon, J. W. (1969) · IEEE Transactions on Computers · doi:10.1109/t-c.1969.222678 · Cited by 3,364
Automatic Chemical Design Using a Data-Driven Continuous Representation of Molecules
Gómez-Bombarelli, R., Wei, J. N., Duvenaud, D., Hernández-Lobato, J. M., Sánchez-Lengeling, B., Sheberla, D., Aguilera-Iparraguirre, J., Hirzel, T. D., Adams, R. P., & Aspuru-Guzik, A. (2018) · ACS Central Science · doi:10.1021/acscentsci.7b00572 · Cited by 3,106
Self-citationOseledets, I. V. (2011) · SIAM Journal on Scientific Computing · doi:10.1137/090752286 · Cited by 2,860
ZINC: A Free Tool to Discover Chemistry for Biology
Irwin, J. J., Sterling, T., Mysinger, M. M., Bolstad, E. S. D., & Coleman, R. G. (2012) · Journal of Chemical Information and Modeling · doi:10.1021/ci3001277 · Cited by 2,611
Research works printed but not linked: 2
- Goodfellow, I. et al. Generative adversarial nets. in Advances in Neural Information Processing Systems 2672–2680 (2014).
- Williams, R. J. Mach. Learn. 8, 229–256 (1992).
Cited by
Sorted by citations
Items 401–500 of 999
Kong, Y., Zhao, X., Liu, R., Yang, Z., Yin, H., Zhao, B., Wang, J., Qin, B., & Yan, A. (2022) · Journal of Cheminformatics · doi:10.1186/s13321-022-00634-3 · Cited by 34
Revolutionizing Medical Practice: The Impact of Artificial Intelligence (AI) on Healthcare
(2024) · Open Access Journal of Applied Science and Technology · doi:10.33140/oajast.02.01.07 · Cited by 31
Learning Joint 2-D and 3-D Graph Diffusion Models for Complete Molecule Generation
Huang, H. K., Sun, L., Du, B., & Lyu, W. (2024) · IEEE Transactions on Neural Networks and Learning Systems · doi:10.1109/tnnls.2024.3416328 · Cited by 69
Advanced imaging techniques and artificial intelligence in pleural diseases: a narrative review
Marchi, G., Mercier, M., Cefalo, J., Salerni, C., Ferioli, M., Candoli, P., Gori, L., Cucchiara, F., Cenerini, G., Guglielmi, G., et al. (2025) · European Respiratory Review · doi:10.1183/16000617.0263-2024 · Cited by 32
Scaffold Hopping with Generative Reinforcement Learning
Rossen, L., Sirockin, F., Schneider, N., & Grisoni, F. (2025) · Journal of Chemical Information and Modeling · doi:10.1021/acs.jcim.5c00029 · Cited by 30
Sutanto, H., & Fetarayani, D. (2025) · npj Drug Discovery. · doi:10.1038/s44386-025-00029-y · Cited by 34
Emerging role of artificial intelligence in therapeutics for COVID-19: a systematic review
Kaushal, K., Sarma, P., Rana, S., Medhi, B., & Naithani, M. (2020) · Journal of Biomolecular Structure and Dynamics · doi:10.1080/07391102.2020.1855250 · Cited by 29
Andrianov, A. M., Nikolaev, G. I., Shuldov, N. A., Bosko, I. P., Anischenko, A. I., & Tuzikov, A. V. (2021) · Journal of Biomolecular Structure and Dynamics · doi:10.1080/07391102.2021.1905559 · Cited by 30
Has Artificial Intelligence Impacted Drug Discovery?
Patronov, A., Papadopoulos, K., & Engkvist, O. (2021) · Methods in molecular biology · doi:10.1007/978-1-0716-1787-8_6 · Cited by 30
A Brief Review of Machine Learning-Based Bioactive Compound Research
Park, J., Beck, B. R., Kim, H. H., Lee, S.-B., & Kang, K. (2022) · Applied Sciences · doi:10.3390/app12062906 · Cited by 30
Exploring chemical space — Generative models and their evaluation
Vogt, M. (2023) · Artificial Intelligence in the Life Sciences · doi:10.1016/j.ailsci.2023.100064 · Cited by 29
Andrianov, A. M., Shuldau, M. A., Furs, K. V., Yushkevich, A. M., & Tuzikov, A. V. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms24098083 · Cited by 30
The Application of Artificial Intelligence Accelerates G Protein-Coupled Receptor Ligand Discovery
Chen, W., Song, C., Leng, L., Zhang, S., & Chen, S. (2023) · Engineering · doi:10.1016/j.eng.2023.09.011 · Cited by 28
Illuminating elite patches of chemical space
Verhellen, J., & den Abeele, J. V. (2020) · Chemical Science · doi:10.1039/d0sc03544k · Cited by 31
Augmented Memory: Sample-Efficient Generative Molecular Design with Reinforcement Learning
Guo, J., & Schwaller, P. (2024) · JACS Au · doi:10.1021/jacsau.4c00066 · Cited by 32
Privacy-by-Design with Federated Learning will drive future Rare Disease Research
Süwer, S., Ullah, M. S., Probul, N., Maier, A., & Baumbach, J. (2024) · Journal of Neuromuscular Diseases · doi:10.1177/22143602241296276 · Cited by 30
Elgawish, M. S., Almatary, A. M., Zaitone, S. A., & Salem, M. S. H. (2025) · RSC Medicinal Chemistry · doi:10.1039/d5md00494b · Cited by 32
Latest advances in aging research and drug discovery
Bakula, D., Ablasser, A., Aguzzi, A., Antebi, A., Barzilai, N., Bittner, M.-I., Jensen, M. B., Calkhoven, C. F., Chen, D., de Grey, A. D. N. J., et al. (2019) · Aging · doi:10.18632/aging.102487 · Cited by 27
Self-citationDeep Learning Applied to Ligand-Based De Novo Drug Design
Palazzesi, F., & Pozzan, A. (2021) · Methods in molecular biology · doi:10.1007/978-1-0716-1787-8_12 · Cited by 30
Yang, Y., Zhou, D., Zhang, X., Shi, Y., Han, J., Zhou, L., Wu, L., Ma, M., Li, J., Peng, S., et al. (2022) · Briefings in Bioinformatics · doi:10.1093/bib/bbac147 · Cited by 27
Applications of machine learning in computer-aided drug discovery
Turzo, S. B. A., Hantz, E. R., & Lindert, S. (2022) · QRB Discovery · doi:10.1017/qrd.2022.12 · Cited by 30
Liu, X., Zhang, W., Tong, X., Zhong, F., Li, Z. S., Xiong, Z., Xiong, J., Wu, X., Fu, Z., Tan, X., et al. (2023) · Journal of Cheminformatics · doi:10.1186/s13321-023-00711-1 · Cited by 29
Medical IoT Record Security and Blockchain: Systematic Review of Milieu, Milestones, and Momentum
Ajakwe, S. O., Igboanusi, I. S., Ihekoronye, V. U., Nwankwo, O. U., Dini, M. A., Izuazu, U. U., Kim, D., & Lee, J. (2024) · Big Data and Cognitive Computing · doi:10.3390/bdcc8090121 · Cited by 32
Collagen remodeling-mediated signaling pathways and their impact on tumor therapy
Yuan, Z., Lin, B., Wang, C., Yan, Z., Yang, F., & Su, H. (2025) · Journal of Biological Chemistry · doi:10.1016/j.jbc.2025.108330 · Cited by 26
Token-Mol 1.0: tokenized drug design with large language models
Wang, J., Qin, R., Wang, M., Fang, M., Zhang, Y., Zhu, Y., Su, Q., Gou, Q., Shen, C., Zhang, O., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-59628-y · Cited by 34
The application of artificial intelligence in lung cancer: a narrative review
Zhang, H., Meng, D., Cai, S., Guo, H., Chen, P., Zheng, Z., Zhu, J., Zhao, W., Wang, H., Zhao, S., et al. (2021) · Translational Cancer Research · doi:10.21037/tcr-20-3398 · Cited by 28
Strategic outline of interventions targeting extracellular matrix for promoting healthy longevity
Park, J. Y. C., King, A., Björk, V., English, B. W., Fedintsev, A., & Ewald, C. Y. (2023) · American Journal of Physiology-Cell Physiology · doi:10.1152/ajpcell.00060.2023 · Cited by 32
Prabhakaran, P., Hebbani, A. V., Menon, S. V., Paital, B., Murmu, S., Kumar, S., Singh, M. K., Sahoo, D. K., & Desai, P. P. D. (2023) · Frontiers in Microbiology · doi:10.3389/fmicb.2023.1194794 · Cited by 26
Recent Trends in Computer-aided Drug Design for Anti-cancer Drug Discovery
Razia, I. T., Kanwal, A., Riaz, H. F., Malik, A., Ahsan, M., Khan, M. S., Raza, A., Sabir, S., Sajid, Z., Khan, M. F., et al. (2023) · Current Topics in Medicinal Chemistry · doi:10.2174/0115680266258467231107102643 · Cited by 26
AI-Driven Decision-Making Applications in Pharmaceutical Sciences
Yingngam, B., Navabhatra, A., & Sillapapibool, P. (2024) · Advances in media, entertainment and the arts (AMEA) book series · doi:10.4018/979-8-3693-0639-0.ch001 · Cited by 26
Artifical intelligence: a virtual chemist for natural product drug discovery
Arora, S., Chettri, S., Percha, V., Kumar, D., & Latwal, M. (2023) · Journal of Biomolecular Structure and Dynamics · doi:10.1080/07391102.2023.2216295 · Cited by 25
Revolutionizing adjuvant development: harnessing AI for next-generation cancer vaccines
Zhang, W., Zheng, X., Coghi, P. S., Chen, J.-H., Dong, B.-J., & Fan, X. (2024) · Frontiers in Immunology · doi:10.3389/fimmu.2024.1438030 · Cited by 27
Advancing molecular machine learning representations with stereoelectronics-infused molecular graphs
Boiko, D. A., Reschützegger, T., Sánchez-Lengeling, B., Blau, S. M., & Gomes, G. (2025) · Nature Machine Intelligence · doi:10.1038/s42256-025-01031-9 · Cited by 31
Niño‐Vega, G. A., Padró-Villegas, L., & López-Romero, E. (2024) · Journal of Fungi · doi:10.3390/jof10120871 · Cited by 33
Wilczok, D. (2025) · Aging · doi:10.18632/aging.206190 · Cited by 32
Thomas, M. C., Matricon, P. G., Gillespie, R. F., Napiórkowska, M., Neale, H., Mason, J. S., Brown, J., Harwood, K., Fieldhouse, C., Swain, N. A., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-60629-0 · Cited by 25
Digital Alchemy: The Rise of Machine and Deep Learning in Small-Molecule Drug Discovery
Manan, A., Baek, E., Ilyas, S., & Lee, D. (2025) · International Journal of Molecular Sciences · doi:10.3390/ijms26146807 · Cited by 27
Optimizing drug design by merging generative AI with a physics-based active learning framework
Filella-Mercè, I., Molina, A., Díaz, L., Orzechowski, M., Berchiche, Y. A., Zhu, Y. M., Vilalta-Mor, J., Malo, L., Yekkirala, A. S., Ray, S. S., et al. (2025) · Communications Chemistry · doi:10.1038/s42004-025-01635-7 · Cited by 46
Shrivastava, A. D., & Kell, D. B. (2021) · Molecules · doi:10.3390/molecules26072065 · Cited by 25
A survey on computational methods in discovering protein inhibitors of SARS-CoV-2
Liu, Q., Wan, J., & Wang, G. (2021) · Briefings in Bioinformatics · doi:10.1093/bib/bbab416 · Cited by 25
Artificial Intelligence–Enabled De Novo Design of Novel Compounds that Are Synthesizable
Bhisetti, G., & Fang, C. (2021) · Methods in molecular biology · doi:10.1007/978-1-0716-1787-8_17 · Cited by 26
Using deep neural networks to explore chemical space
Vogt, M. (2021) · Expert Opinion on Drug Discovery · doi:10.1080/17460441.2022.2019704 · Cited by 24
Perplexity-Based Molecule Ranking and Bias Estimation of Chemical Language Models
Moret, M., Grisoni, F., Katzberger, P., & Schneider, G. (2022) · Journal of Chemical Information and Modeling · doi:10.1021/acs.jcim.2c00079 · Cited by 27
Few-shot deep learning for AFM force curve characterization of single-molecule interactions
Waite, J. R., Tan, S. Y., Saha, H., Sarkar, S., & Sarkar, A. (2023) · Patterns · doi:10.1016/j.patter.2022.100672 · Cited by 25
Molecule generation for drug design: A graph learning perspective
Yang, N., Wu, H., Zeng, K., Li, Y., Bao, S., & Yan, J. (2024) · Fundamental Research · doi:10.1016/j.fmre.2024.11.027 · Cited by 36
Yang, L., Yang, G., Bing, Z., Tian, Y., Huang, L., Niu, Y., & Yang, L. (2022) · Briefings in Bioinformatics · doi:10.1093/bib/bbac320 · Cited by 24
CardioGenAI: a machine learning-based framework for re-engineering drugs for reduced hERG liability
Kyro, G. W., Martin, M. T., Watt, E. D., & Batista, V. S. (2025) · Journal of Cheminformatics · doi:10.1186/s13321-025-00976-8 · Cited by 24
Chigozie, V. U., Ugochukwu, C. G., Igboji, K. O., & Okoye, F. B. (2025) · BMC Artificial Intelligence · doi:10.1186/s44398-025-00004-7 · Cited by 28
Lam, J. H., & Katritch, V. (2025) · npj Drug Discovery. · doi:10.1038/s44386-025-00031-4 · Cited by 30
The impact of AI on modern oncology from early detection to personalized cancer treatment
Li, J., Zhang, L., Yu, Z., Bao, Z., Li, D., & Wang, L. (2026) · npj Precision Oncology · doi:10.1038/s41698-026-01276-6 · Cited by 24
Deregulation of Chromosome Segregation and Cancer
Curtis, N. L., Ruda, G. F., Brennan, P. E., & Bolaños-García, V. M. (2019) · Annual Review of Cancer Biology · doi:10.1146/annurev-cancerbio-030419-033541 · Cited by 23
Anand, A., Romero, J., Degroote, M., & Aspuru‐Guzik, A. (2021) · Advanced Quantum Technologies · doi:10.1002/qute.202000069 · Cited by 35
Self-citationBorn, J., Huynh, T., Stroobants, A., Cornell, W. D., & Manica, M. (2021) · Journal of Chemical Information and Modeling · doi:10.1021/acs.jcim.1c00889 · Cited by 25
Retro Drug Design: From Target Properties to Molecular Structures
Wang, Y., Michael, S., Yang, S.-M., Huang, R., Cruz-Gutierrez, K., Zhang, Y., Zhao, J., Xia, M., Shinn, P., & Sun, H. (2022) · Journal of Chemical Information and Modeling · doi:10.1021/acs.jcim.2c00123 · Cited by 24
A Review of Deep Learning-Based Approaches for Detection and Diagnosis of Diverse Classes of Drugs
Kumar, A., Kumar, N., Kuriakose, J., & Kumar, Y. (2023) · Archives of Computational Methods in Engineering · doi:10.1007/s11831-023-09936-7 · Cited by 24
Vangala, S. R., Krishnan, S. R., Bung, N., Srinivasan, R., & Roy, A. (2023) · Journal of Chemical Information and Modeling · doi:10.1021/acs.jcim.3c00689 · Cited by 24
Boiko, D. A., Pentsak, E. O., Cherepanova, V. A., Gordeev, E. G., & Ananikov, V. P. (2021) · Chemical Science · doi:10.1039/d0sc05696k · Cited by 25
Reply to ‘Assessing the impact of generative AI on medicinal chemistry’
Zhavoronkov, A. A., & Aspuru‐Guzik, A. (2020) · Nature Biotechnology · doi:10.1038/s41587-020-0417-3 · Cited by 24
Self-citationHit and Lead Discovery with Explorative RL and Fragment-based Molecule GenerationPreprint
Yang, S., Hwang, D., Lee, S., Ryu, S., & Hwang, S. J. (2021) · arXiv (Cornell University) · doi:10.48550/arxiv.2110.01219 · Cited by 24
Chemical design with GPU-based Ising machines
Mao, Z., Matsuda, Y., Tamura, R., & Tsuda, K. (2023) · Digital Discovery · doi:10.1039/d3dd00047h · Cited by 23
Chipot, C. J. (2024) · The Journal of Physical Chemistry B · doi:10.1021/acs.jpcb.4c06231 · Cited by 23
Liu, C.-S., Yan, B., Sun, H., Lu, J., & Puno, P. (2025) · Natural Products and Bioprospecting · doi:10.1007/s13659-025-00521-y · Cited by 24
Artificial intelligence in pharmaceutical sciences: A comprehensive review
Kandhare, P., Kurlekar, M., Deshpande, T., & Pawar, A. (2025) · Medicine in Novel Technology and Devices · doi:10.1016/j.medntd.2025.100375 · Cited by 26
Advances in machine learning for optimizing pharmaceutical drug discovery
Ogbonna, U. E., Ofoezie, E. F., Babalola, O. O., Ottu, P. O., Ogbonna, C. A., Olisakwe, S. C., George, E. T., Babarinde, S., Omaba, O. J., Chukwuemeka, C. G., et al. (2025) · Current Proteomics · doi:10.1016/j.curpro.2025.100015 · Cited by 25
Generative AI for computational chemistry: A roadmap to predicting emergent phenomena
Tiwary, P., Herron, L., John, R., Lee, S., Sanwal, D., & Wang, R. (2025) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2415655121 · Cited by 37
Property-Aware Relation Networks for Few-Shot Molecular Property Prediction
Yao, Q., Shen, Z., Wang, Y., & Dou, D. (2024) · IEEE Transactions on Pattern Analysis and Machine Intelligence · doi:10.1109/tpami.2024.3368090 · Cited by 26
Kang, K. M., Lee, I., Nam, H., & Kim, Y. (2022) · European Journal of Medicinal Chemistry · doi:10.1016/j.ejmech.2022.114556 · Cited by 27
Artificial intelligence in molecular de novo design: Integration with experiment
Janet, J. P., Mervin, L., & Engkvist, O. (2023) · Current Opinion in Structural Biology · doi:10.1016/j.sbi.2023.102575 · Cited by 25
De Novo Design of κ-Opioid Receptor Antagonists Using a Generative Deep-Learning Framework
Salas-Estrada, L. A., Provasi, D., Qiu, X., Kanıskan, H. Ü., Huang, X., DiBerto, J. F., Ribeiro, J. M. L., Jin, J. J., Roth, B. L., & Filizola, M. (2023) · Journal of Chemical Information and Modeling · doi:10.1021/acs.jcim.3c00651 · Cited by 26
REINVENT4: Modern AI–Driven Generative Molecule DesignPreprint
Loeffler, H. H., He, J., Tibo, A., Janet, J. P., Voronov, A., Mervin, L., & Engkvist, O. (2023) · ChemRxiv · doi:10.26434/chemrxiv-2023-xt65x · Cited by 23
Bentwich, I. (2023) · Drug Discovery Today · doi:10.1016/j.drudis.2023.103515 · Cited by 22
Pharmacophore-oriented 3D molecular generation toward efficient feature-customized drug discovery
Peng, J., Yu, J.-L., Yang, Z.-B., Chen, Y.-T., Wei, S.-Q., Meng, F.-B., Wang, Y.-G., Huang, X., & Li, G. (2025) · Nature Computational Science · doi:10.1038/s43588-025-00850-5 · Cited by 26
Synthetic lethality in cancer drug discovery: challenges and opportunities
Gonçalves, E., Ryan, C. J., & Adams, D. J. (2025) · Nature Reviews Drug Discovery · doi:10.1038/s41573-025-01273-7 · Cited by 27
Kennedy, K. P., Keogh, B., Lopez, C., Adelfio, A., Molloy, B., Kerr, A., Wall, A. M., Jalowicki, G., Holton, T. A., & Khaldi, N. (2020) · Foods · doi:10.3390/foods9091147 · Cited by 22
Crystal structure prediction in a continuous representative space
Lee, I., & Chang, K. J. (2021) · Computational Materials Science · doi:10.1016/j.commatsci.2021.110436 · Cited by 23
A Quantum Generative Adversarial Network for distributions
Assouel, A., Jacquier, A., & Kondratyev, A. (2021) · Quantum Machine Intelligence · doi:10.1007/s42484-022-00083-z · Cited by 22
Lou, C., Yang, H., Wang, J., Huang, M., Li, W., Liu, G., Lee, P. W., & Tang, Y. (2022) · Journal of Chemical Information and Modeling · doi:10.1021/acs.jcim.2c00297 · Cited by 22
Lim, S., Lee, S., Piao, Y., Choi, M., Bang, D., Gu, J., & Kim, S. (2022) · Computational and Structural Biotechnology Journal · doi:10.1016/j.csbj.2022.07.049 · Cited by 23
Designing molecules with autoencoder networks
Ilnicka, A., & Schneider, G. (2023) · Nature Computational Science · doi:10.1038/s43588-023-00548-6 · Cited by 25
High-Temperature Polymer Dielectrics Designed Using an Invertible Molecular Graph Generative Model
Liu, D., Zhang, Y., Dong, W.-Z., Feng, Q., Zhong, S., & Dang, Z. (2023) · Journal of Chemical Information and Modeling · doi:10.1021/acs.jcim.3c01572 · Cited by 22
A Crystallization Robot for Generating True Random Numbers Based on Stochastic Chemical Processes
Lee, E. C., Gutiérrez, J. M. P., Henson, A., Brechin, E. K., & Cronin, L. (2020) · Matter · doi:10.1016/j.matt.2020.01.024 · Cited by 23
Amortized Tree Generation for Bottom-up Synthesis Planning and Synthesizable Molecular DesignPreprint
Gao, W., Mercado, R., & Coley, C. W. (2021) · arXiv (Cornell University) · doi:10.48550/arxiv.2110.06389 · Cited by 63
Can Generative-Model-Based Drug Design Become a New Normal in Drug Discovery?
Chen, H. (2022) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.1c02042 · Cited by 21
Reprogramming the tumor microenvironment to overcome immunotherapy resistance in pancreatic cancer
Hui, X., Tian, X., Ding, S., Sun, A., Zhao, T., & Wang, H. (2025) · Frontiers in Immunology · doi:10.3389/fimmu.2025.1717062 · Cited by 23
Schultz, K. J., Colby, S. M., Yesiltepe, Y., Nuñez, J., McGrady, M. Y., & Renslow, R. S. (2020) · Physical Chemistry Chemical Physics · doi:10.1039/d0cp03620j · Cited by 24
Sicho, M., Liu, X., Svozil, D., & van Westen, G. J. P. (2021) · Journal of Cheminformatics · doi:10.1186/s13321-021-00550-y · Cited by 22
Advancing molecular graphs with descriptors for the prediction of chemical reaction yields
Yarish, D., Garkot, S., Grygorenko, O. O., Radchenko, D. S., Moroz, Y. S., & Gurbych, O. (2022) · Journal of Computational Chemistry · doi:10.1002/jcc.27016 · Cited by 23
Mkrtchyan, G. V., Veviorskiy, A., Izumchenko, E., Shneyderman, A., Pun, F. W., Ozerov, I. V., Aliper, A., Zhavoronkov, A. A., & Scheibye‐Knudsen, M. (2022) · Cell Death and Disease · doi:10.1038/s41419-022-05437-w · Cited by 23
Self-citationMolecular targets of insecticides and herbicides – Are there useful overlaps?
Duke, S. O., Pan, Z., Chittiboyina, A. G., Swale, D. R., & Sparks, T. C. (2023) · Pesticide Biochemistry and Physiology · doi:10.1016/j.pestbp.2023.105340 · Cited by 21
Yang, M., Sun, H., Liu, X., Xue, X., Deng, Y., & Wang, X. (2023) · Briefings in Bioinformatics · doi:10.1093/bib/bbad185 · Cited by 22
Unraveling the complexities of colorectal cancer and its promising therapies – An updated review
Saha, S., Ghosh, S., Ghosh, S., Nandi, S., & Nayak, A. (2024) · International Immunopharmacology · doi:10.1016/j.intimp.2024.113325 · Cited by 25
Ali, N. S., Hanif, N., Khan, H. A., Waseem, M., Saeed, A., Zakir, S., Khan, A., Aamir, M., Ali, A., Ali, A., et al. (2025) · Discover Applied Sciences · doi:10.1007/s42452-025-06991-6 · Cited by 26
Tomoni, A., Lees, J., Santana, A. G., Bolaños-García, V. M., & Bastida, Á. (2019) · Catalysts · doi:10.3390/catal9090778 · Cited by 22
Bilsland, A. E., McAulay, K., West, R., Pugliese, A., & Bower, J. F. (2021) · Journal of Chemical Information and Modeling · doi:10.1021/acs.jcim.0c01226 · Cited by 24
Differentiable Scaffolding Tree for Molecular OptimizationPreprint
Fu, T., Gao, W., Xiao, C., Yasonik, J., Coley, C. W., & Sun, J. (2021) · arXiv (Cornell University) · doi:10.48550/arxiv.2109.10469 · Cited by 48
A comprehensive review of artificial intelligence for pharmacology research
Li, B., Tan, K., Lao, A. R., Wang, H., Zheng, H., & Zhang, L. (2024) · Frontiers in Genetics · doi:10.3389/fgene.2024.1450529 · Cited by 26
AI-Based Computational Methods in Early Drug Discovery and Post Market Drug Assessment: A Survey
Rajaei, F., Minoccheri, C., Wittrup, E. M., Wilson, R. C., Athey, B. D., Omenn, G. S., & Najarian, K. (2024) · IEEE Transactions on Computational Biology and Bioinformatics · doi:10.1109/tcbb.2024.3492708 · Cited by 24
Alghamdi, M. A. (2025) · Pharmaceuticals · doi:10.3390/ph18071041 · Cited by 23
Lin, W., Jin, L., Jiang, Z., Cai, M., Lai, Z., Yurchenko, D., Yan, B., Zhou, S., Novoselov, K. S., Liao, W., et al. (2026) · Advanced Functional Materials · doi:10.1002/adfm.75070 · Cited by 24
Raza, A., Chohan, T. A., Buabeid, M. A., Arafa, E. A., Chohan, T. A., Fatima, B., Sultana, K., Ullah, M. S., & Murtaza, G. (2022) · Journal of Biomolecular Structure and Dynamics · doi:10.1080/07391102.2022.2136244 · Cited by 21
Metadata
- Authors
- Zhavoronkov, A., Ivanenkov, Y. A., Aliper, A., Veselov, M. S., Aladinskiy, V. A., Aladinskaya, A. V., Terentiev, V. A., Polykovskiy, D. A., Kuznetsov, M. D., Asadulaev, A., Volkov, Y., Zholus, A., Shayakhmetov, R. R., Zhebrak, A., Minaeva, L. I., Zagribelnyy, B. A., Lee, L. H., Soll, R., Madge, D., Xing, L., Guo, T., & Aspuru-Guzik, A.
- Affiliations
- WuXi AppTec (China) (CN)
- Corresponding author
- Zhavoronkov, Alex
- ORCID
- Venue
- Nature Biotechnology
- Published
- 2019-09
- Volume
- 37
- Issue
- 9
- Pages
- 1038-1040
- ISSN
- 0733-222X (ISSN-L)
- 1087-0156
- 1546-1696
- OpenAlex
- W2971690404
- Cited by
- 1,573
- References
- 57
- Citations by year
- 2026: 320 · 2025: 306 · 2024: 224 · 2023: 178 · 2022: 169 · 2021: 206 · 2020: 144 · 2019: 22
- FWCI
- 92.35
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Nature Biotechnology (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Nvidia
- Nature
- School of Medicine, University of New Mexico
- Topics
- Life Sciences › Pharmacology, Toxicology and Pharmaceutics › Drug Discovery › Computational Drug Discovery Methods
- Physical Sciences › Materials Science › Materials Chemistry › Machine Learning in Materials Science
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Degradation and Inhibitors
- Keywords
- DDR1, deep generative models, drug discovery, fibrosis, pharmacokinetics
- MeSH terms
- Discoidin Domain Receptor 1, Deep Learning, Animals, Dogs, Drug Evaluation, Preclinical, Enzyme Inhibitors, Humans, Microsomes, Liver, Models, Molecular, Protein Conformation, Molecular Structure, Mice, Rats
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review