The DOI matches its Crossref record; 5 of the 5 references it cites were found in a registry or an index.
The nf-core framework for community-curated bioinformatics pipelines
Open accessOverview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Van der Auwera, G. A., Carneiro, M. O., Hartl, C., Poplin, R., del Angel, G., Levy‐Moonshine, A., Jordan, T., Shakir, K., Roazen, D., Thibault, J., et al. (2013) · Current Protocols in Bioinformatics · doi:10.1002/0471250953.bi1110s43 · Cited by 6,687
1,500 scientists lift the lid on reproducibility
Baker, M. (2016) · Nature · doi:10.1038/533452a · Cited by 4,209
Nextflow enables reproducible computational workflows
Di Tommaso, P., Chatzou, M., Floden, E. W., Barja, P. P., Palumbo, E., & Notredame, C. (2017) · Nature Biotechnology · doi:10.1038/nbt.3820 · Cited by 4,001
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
Afgan, E., Baker, D., Batut, B., van den Beek, M., Bouvier, D., Čech, M., Chilton, J., Clements, D., Coraor, N., Grüning, B. A., et al. (2018) · Nucleic Acids Research · doi:10.1093/nar/gky379 · Cited by 3,662
Best Practices for Scientific Computing
Wilson, G., Aruliah, D. A., Brown, C. T., Chue Hong, N. P., Davis, M., Guy, R. T., Haddock, S. H. D., Huff, K. D., Mitchell, I. M., Plumbley, M. D., et al. (2014) · PLoS Biology · doi:10.1371/journal.pbio.1001745 · Cited by 723
Research works printed but not linked: 14
- Sansone, S.-A. et al. Nat. Biotechnol. 37, 358–367 (2019). · DOI · Paper page
- Perkel, J. M. Nature 560, 513–515 (2018). · doi:10.1038/d41586-018-05990-5
- Ison, J. et al. Nucleic Acids Res. 44, D38–D47 (2016). · DOI
- Henry, V.J., Bandrowski, A.E., Pepin, A.-S., Gonzalez, B.J. & Desfeux, A. Database (Oxford) https://doi.org/10.1093/database/bau069 (2014). · DOI · Paper page
- Blankenberg, D. et al. Genome Biol. 15, 403 (2014). · DOI · Paper page
- Leipzig, J. Brief. Bioinform. 18, 530–536 (2017).
- Federico, A. et al. Front. Genet. 10, 614 (2019). · DOI
- Köster, J. & Rahmann, S. in German Conference on Bioinformatics 2012 (Schloss Dagstuhl-Leibniz-Zentrum fuer Informatik, 2012).
- Sloan, C. A. et al. Nucleic Acids Res. 44, D726–D732 (2016). · DOI · Paper page
- Grüning, B. et al. Cell Syst. 6, 631–635 (2018). · DOI
- Möller, S. et al. Data Sci. Eng. 2, 232–244 (2017). · DOI
- Grüning, B. et al. Nat. Methods 15, 475–476 (2018). · DOI · Paper page
- O’Connor, B. D. et al. F1000 Res. 6, 52 (2017). · DOI
- da Veiga Leprevost, F. et al. Bioinformatics 33, 2580–2582 (2017). · DOI · Paper page
Cited by
Small-molecule inhibition of METTL3 as a strategy against myeloid leukaemia
Yankova, E., Blackaby, W., Albertella, M., Rak, J., De Braekeleer, E., Tsagkogeorga, G., Pilka, E. S., Aspris, D., Leggate, D., Hendrick, A. G., et al. (2021) · Nature · doi:10.1038/s41586-021-03536-w · Cited by 1,352
Lung adenocarcinoma promotion by air pollutants
Hill, W., Lim, E. L., Weeden, C. E., Lee, C., Augustine, M., Chen, K., Kuan, F.-C., Marongiu, F., Evans, E. J., Moore, D. A., et al. (2023) · Nature · doi:10.1038/s41586-023-05874-3 · Cited by 808
Chromatin accessibility profiling by ATAC-seq
Grandi, F. C., Modi, H., Kampman, L., & Corces, M. R. (2022) · Nature Protocols · doi:10.1038/s41596-022-00692-9 · Cited by 557
RNA-Mediated Feedback Control of Transcriptional Condensates
Henninger, J. E., Oksuz, O., Shrinivas, K., Sagi, I., LeRoy, G., Zheng, M. M., Andrews, J. O., Zamudio, A. V., Lazaris, C., Hannett, N. M., et al. (2021) · Cell · doi:10.1016/j.cell.2020.11.030 · Cited by 594
Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing
Abellan-Schneyder, I., Matchado, M. S., Reitmeier, S., Sommer, A., Sewald, Z., Baumbach, J., List, M., & Neuhaus, K. (2021) · mSphere · doi:10.1128/msphere.01202-20 · Cited by 498
Metadata
- Authors
- Ewels, P. A., Peltzer, A., Fillinger, S., Patel, H., Alneberg, J., Wilm, A., Garcia, M. U., Di Tommaso, P., & Nahnsen, S.
- Venue
- Nature Biotechnology
- Published
- 2020-02-13
- Volume
- 38
- Issue
- 3
- Pages
- 276-278
- ISSN
- 0733-222X (ISSN-L)
- 1087-0156
- 1546-1696
- OpenAlex
- W3006653136
- Cited by
- 4,050
- References
- 5
- FWCI
- 200.93
- Type
- journal article
- Language
- en
- Open access
- green
- Licence
- www.springer.com/tdm (tdm)
- www.springer.com/tdm (vor)
- Funders
- EC | Horizon 2020 Framework Programme (815668 (BovReg))
- Deutsche Forschungsgemeinschaft (KO-2313/6-2, 398967434–TRR 261, Liver Cancer SFB/TR 209)
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: The nf-core framework for community-curated bioinformatics pipelines. https://app.cochat.ai/papers/10.1038/s41587-020-0439-x
- The paper
- Ewels, P. A., Peltzer, A., Fillinger, S., Patel, H., Alneberg, J., Wilm, A., Garcia, M. U., Di Tommaso, P., & Nahnsen, S. (2020). The nf-core framework for community-curated bioinformatics pipelines. Nature Biotechnology. https://doi.org/10.1038/s41587-020-0439-x
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.