Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data
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Abstract
Osteoarthritis is the most common musculoskeletal disease and the leading cause of disability globally. Here, we performed a genome-wide association study for osteoarthritis (77,052 cases and 378,169 controls), analyzing four phenotypes: knee osteoarthritis, hip osteoarthritis, knee and/or hip osteoarthritis, and any osteoarthritis. We discovered 64 signals, 52 of them novel, more than doubling the number of established disease loci. Six signals fine-mapped to a single variant. We identified putative effector genes by integrating expression quantitative trait loci (eQTL) colocalization, fine-mapping, and human rare-disease, animal-model, and osteoarthritis tissue expression data. We found enrichment for genes underlying monogenic forms of bone development diseases, and for the collagen formation and extracellular matrix organization biological pathways. Ten of the likely effector genes, including TGFB1 (transforming growth factor beta 1), FGF18 (fibroblast growth factor 18), CTSK (cathepsin K), and IL11 (interleukin 11), have therapeutics approved or in clinical trials, with mechanisms of action supportive of evaluation for efficacy in osteoarthritis.
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Polymorphisms in UQCC1 have been linked to human height and osteoarthritis.
“Polymorphisms in this gene have been linked to human height [42] and osteoarthritis [43], and rs2378353 has been found to have a significant impact on the splicing of UQCC1 in muscle-skeletal tissue, as well as its expression in multiple tissues including fibroblasts, muscle-skeletal tissue, and skin [44].”
From Combined genome-wide association study of 136 quantitative ear morphology traits in multiple populations reveal 8 novel loci (2023) · cites this paper as [43]
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The Sequence Alignment/Map format and SAMtools
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R., & 1000 Genome Project Data Processing Subgroup (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp352 · Cited by 62,041 · see citing works
PLINK: a tool set for whole-genome association and population-based linkage analyses.
Purcell, S., Neale, B., Todd-Brown, K., Thomas, L., Ferreira, M. A. R., Bender, D., Maller, J., Sklar, P., de Bakker, P. I. W., Daly, M. J., et al. (2007) · The American Journal of Human Genetics · doi:10.1086/519795 · Cited by 34,089 · see citing works
A global reference for human genetic variation
The 1000 Genomes Project Consortium, authors, C., Auton, A., Abecasis, G. R., Steering committee, Altshuler, D. M., Durbin, R. M., Abecasis, G. R., Bentley, D. R., Chakravarti, A., et al. (2015) · Nature · doi:10.1038/nature15393 · Cited by 18,247 · see citing works
Vos, T., Flaxman, A. D., Naghavi, M., Lozano, R., Michaud, C., Ezzati, M., Shibuya, K., Salomon, J. A., Abdalla, S., Aboyans, V., et al. (2012) · The Lancet · doi:10.1016/s0140-6736(12)61729-2 · Cited by 8,291 · see citing works
Self-citationLD Score regression distinguishes confounding from polygenicity in genome-wide association studies
Schizophrenia Working Group of the Psychiatric Genomics Consortium, Bulik-Sullivan, B. K., Loh, P.-R., Finucane, H. K., Ripke, S., Yang, J., Patterson, N., Daly, M. J., Price, A. L., & Neale, B. M. (2015) · Nature Genetics · doi:10.1038/ng.3211 · Cited by 5,559 · see citing works
METAL: fast and efficient meta-analysis of genomewide association scans
Willer, C. J., Li, Y., & Abecasis, G. R. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btq340 · Cited by 5,205 · see citing works
Giambartolomei, C., Vukcevic, D., Schadt, E. E., Franke, L., Hingorani, A. D., Wallace, C., & Plagnol, V. (2014) · PLoS Genetics · doi:10.1371/journal.pgen.1004383 · Cited by 4,261 · see citing works
MAGMA: Generalized Gene-Set Analysis of GWAS Data
de Leeuw, C. A., Mooij, J. M., Heskes, T., & Posthuma, D. (2015) · PLOS Computational Biology · doi:10.1371/journal.pcbi.1004219 · Cited by 3,653 · see citing works
Zheng, J., Erzurumluoglu, A. M., Elsworth, B. L., Kemp, J. P., Howe, L., Haycock, P. C., Hemani, G., Tansey, K., Laurin, C., Early Genetics and Lifecourse Epidemiology (EAGLE) Eczema Consortium, et al. (2017) · Bioinformatics · doi:10.1093/bioinformatics/btw613 · Cited by 869 · see citing works
Self-citationThe Genotype-Tissue Expression (GTEx) Project
Carithers, L. J., & Moore, H. M. (2015) · Biopreservation and Biobanking · doi:10.1089/bio.2015.29031.hmm · Cited by 549 · see citing works
Flagged first, then by citations
Research works printed but not linked: 46
- [2]Hiligsmann M Health economics in the field of osteoarthritis: an expert's consensus paper from the European Society for Clinical and Economic Aspects of Osteoporosis and Osteoarthritis (ESCEO) Semin Arthritis Rheum 2013 43 303 13 23992801
- [3]Baker PN The effect of surgical factors on early patient-reported outcome measures (PROMS) following total knee replacement J Bone Joint Surg Br 2012 94 1058 66 22844046
- [4]Zengini E Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis Nat Genet 2018 50 549 558 29559693 PMC5896734
- [5]Bulik-Sullivan B An atlas of genetic correlations across human diseases and traits Nat Genet 2015 47 1236 41 26414676 PMC4797329
- [7]Yang J Lee SH Goddard ME Visscher PM GCTA: a tool for genome-wide complex trait analysis Am J Hum Genet 2011 88 76 82 21167468 PMC3014363
- [8]Wakefield J Bayes factors for genome-wide association studies: comparison with P-values Genet Epidemiol 2009 33 79 86 18642345
- [9]arcOGEN Consortium Identification of new susceptibility loci for osteoarthritis (arcOGEN): a genome-wide association study Lancet 2012 380 815 23 22763110 PMC3443899
- [10]Takeuchi Y Interleukin-11 as a stimulatory factor for bone formation prevents bone loss with advancing age in mice J Biol Chem 2002 277 49011 8 12384500
- [11]Sims NA Interleukin-11 receptor signaling is required for normal bone remodeling J Bone Miner Res 2005 20 1093 102 15940362
- [12]Chou CH Insights into osteoarthritis progression revealed by analyses of both knee tibiofemoral compartments Osteoarthritis Cartilage 2015 23 571 80 25575966 PMC4814163
- [13]Lanktree MB Meta-analysis of Dense Genecentric Association Studies Reveals Common and Uncommon Variants Associated with Height Am J Hum Genet 2011 88 6 18 21194676 PMC3014369
- [14]Harmegnies D Characterization of a potent human interleukin-11 agonist Biochem J 2003 375 23 32 12919066 PMC1223674
- [15]Keynan S Hooper NM Felici A Amicosante G Turner AJ The renal membrane dipeptidase (dehydropeptidase I) inhibitor, cilastatin, inhibits the bacterial metallo-beta-lactamase enzyme CphA Antimicrob Agents Chemother 1995 39 1629 31 7492120 PMC162797
- [16]Janssens K Camurati-Engelmann disease: review of the clinical, radiological, and molecular data of 24 families and implications for diagnosis and treatment J Med Genet 2006 43 1 11 15894597 PMC2564495
- [17]Yuldashev AJ Orthopedic Manifestations of Type I Camurati-Engelmann Disease Clin Orthop Surg 2017 9 109 115 28261436 PMC5334020
- [18]Wu M Chen G Li YP TGF-beta and BMP signaling in osteoblast, skeletal development, and bone formation, homeostasis and disease Bone Res 2016 4 16009 PMC4985055 27563484
- [19]Tang Y TGF-beta1-induced migration of bone mesenchymal stem cells couples bone resorption with formation Nat Med 2009 15 757 65 19584867 PMC2727637
- [20]Zhao H Transforming Growth Factor beta1/Smad4 Signaling Affects Osteoclast Differentiation via Regulation of miR-155 Expression Mol Cells 2017 40 211 221 28359146 PMC5386959
- [21]Zhou S TGF-beta regulates beta-catenin signaling and osteoblast differentiation in human mesenchymal stem cells J Cell Biochem 2011 112 1651 60 21344492 PMC3079785
- [22]Zhou S Eid K Glowacki J Cooperation between TGF-beta and Wnt pathways during chondrocyte and adipocyte differentiation of human marrow stromal cells J Bone Miner Res 2004 19 463 70 15040835
- [23]Kim MK A Multicenter, Double-Blind, Phase III Clinical Trial to Evaluate the Efficacy and Safety of a Cell and Gene Therapy in Knee Osteoarthritis Patients Hum Gene Ther Clin Dev 2018 29 48 59 29641281
- [24]Nuchel J TGFB1 is secreted through an unconventional pathway dependent on the autophagic machinery and cytoskeletal regulators Autophagy 2018 14 465 486 29297744 PMC5915026
- [25]Koli K Ryynanen MJ Keski-Oja J Latent TGF-beta binding proteins (LTBPs)-1 and -3 coordinate proliferation and osteogenic differentiation of human mesenchymal stem cells Bone 2008 43 679 88 18672106
- [26]Cheung KS MicroRNA-146a regulates human foetal femur derived skeletal stem cell differentiation by down-regulating SMAD2 and SMAD3 PLoS One 2014 9 e98063 PMC4043645 24892945
- [27]Tardif G NFAT3 and TGF-beta/SMAD3 regulate the expression of miR-140 in osteoarthritis Arthritis Res Ther 2013 15 R197 24257415 PMC3978709
- [28]Nishimura R Hata K Nakamura E Murakami T Takahata Y Transcriptional network systems in cartilage development and disease Histochem Cell Biol 2018 149 353 363 29308531
- [29]Kanaan RA Kanaan LA Transforming growth factor beta1, bone connection Med Sci Monit 2006 12 RA164 9 16865078
- [30]Song J MicroRNA-488 regulates zinc transporter SLC39A8/ZIP8 during pathogenesis of osteoarthritis J Biomed Sci 2013 20 31 23688035 PMC3706240
- [31]Kim JH Regulation of the catabolic cascade in osteoarthritis by the zinc-ZIP8-MTF1 axis Cell 2014 156 730 43 24529376
- [32]Speliotes EK Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index Nat Genet 2010 42 937 48 20935630 PMC3014648
- [33]Zhang R A blood pressure-associated variant of the SLC39A8 gene influences cellular cadmium accumulation and toxicity Hum Mol Genet 2016 25 4117 4126 27466201 PMC5291231
- [34]Li D A Pleiotropic Missense Variant in SLC39A8 Is Associated With Crohn's Disease and Human Gut Microbiome Composition Gastroenterology 2016 151 724 32 27492617 PMC5037008
- [35]Sudlow C UK biobank: an open access resource for identifying the causes of a wide range of complex diseases of middle and old age PLoS Med 2015 12 e1001779 PMC4380465 25826379
- [36]McCarthy S A reference panel of 64,976 haplotypes for genotype imputation Nat Genet 2016 48 1279 83 27548312 PMC5388176
- [38]Panoutsopoulou K Insights into the genetic architecture of osteoarthritis from stage 1 of the arcOGEN study Ann Rheum Dis 2011 70 864 7 21177295 PMC3070286
- [39]Evangelou E A meta-analysis of genome-wide association studies identifies novel variants associated with osteoarthritis of the hip Ann Rheum Dis 2014 73 2130 6 23989986 PMC4251181
- [40]Prins BP Genome-wide analysis of health-related biomarkers in the UK Household Longitudinal Study reveals novel associations Sci Rep 2017 7 11008 PMC5591265 28887542
- [43]Li MX Yeung JM Cherny SS Sham PC Evaluating the effective numbers of independent tests and significant p-value thresholds in commercial genotyping arrays and public imputation reference datasets Hum Genet 2012 131 747 56 22143225 PMC3325408
- [44]Hemani G The MR-Base platform supports systematic causal inference across the human phenome Elife 2018 7 PMC5976434 29846171
- [45]Barbeira A MetaXcan: Summary Statistics Based Gene-Level Association Method Infers Accurate PrediXcan Results Preprint at bioRxiv 2016 10.1101/045260 · DOI
- [48]Farh KK Genetic and epigenetic fine mapping of causal autoimmune disease variants Nature 2015 518 337 43 25363779 PMC4336207
- [52]Shen J Song K Slater AJ Ferrero E Nelson MR STOPGAP: a database for systematic target opportunity assessment by genetic association predictions Bioinformatics 2017 33 2784 2786 28472345
- [53]Aury-Landas J Marcelli C Leclercq S Boumediene K Bauge C Genetic Determinism of Primary Early-Onset Osteoarthritis Trends Mol Med 2016 22 38 52 26691295
- [54]Steinberg J Integrative epigenomics, transcriptomics and proteomics of patient chondrocytes reveal genes and pathways involved in osteoarthritis Sci Rep 2017 7 8935 PMC5566454 28827734
- [55]Koscielny G Open Targets: a platform for therapeutic target identification and validation Nucleic Acids Res 2017 45 D985 D994 27899665 PMC5210543
- [56]Yang X TGF-beta/Smad3 signals repress chondrocyte hypertrophic differentiation and are required for maintaining articular cartilage J Cell Biol 2001 153 35 46 11285272 PMC2185521
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“Polymorphisms in this gene have been linked to human height [42] and osteoarthritis [43], and rs2378353 has been found to have a significant impact on the splicing of UQCC1 in muscle-skeletal tissue, as well as its expression in multiple tissues including fibroblasts, muscleskeletal tissue, and skin [44].”
Background
- Authors
- arcOGEN Consortium, Tachmazidou, I., Hatzikotoulas, K., Southam, L., Esparza-Gordillo, J., Haberland, V., Zheng, J., Johnson, T., Koprulu, M., Zengini, E., Steinberg, J., Wilkinson, J. M., Bhatnagar, S., Hoffman, J. D., Buchan, N., Süveges, D., Yerges-Armstrong, L., Smith, G. D., Gaunt, T. R., Scott, R. A., McCarthy, L. C., & Zeggini, E.
- Affiliations
- GlaxoSmithKline (United Kingdom) (GB)
- Wellcome Sanger Institute (GB)
- Centre for Human Genetics (GB)
- University of Bristol (GB)
- University of Cambridge (GB)
- University of Sheffield (GB)
- McGill University (CA)
- GlaxoSmithKline (United States) (US)
- European Bioinformatics Institute (GB)
- Corresponding author
- Zeggini, Eleftheria
- ORCID
- Venue
- Nature Genetics
- Published
- 2019-01-21
- Volume
- 51
- Issue
- 2
- Pages
- 230-236
- ISSN
- 1061-4036 (ISSN-L)
- 1546-1718
- PMC
- PMC6400267
- OpenAlex
- W2950103694
- Cited by
- 516
- References
- 10
- Citations by year
- 2026: 42 · 2025: 48 · 2024: 115 · 2023: 90 · 2022: 73 · 2021: 69 · 2020: 50 · 2019: 28
- FWCI
- 41.73
- Type
- journal article
- Language
- en
- Open access
- green
- doi.org
- Licence
- cc-by-nd
- www.springer.com/tdm (tdm)
- Locations
- Nature Genetics (publishedVersion)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nd)
- PubMed (publishedVersion)
- Explore Bristol Research (publishedVersion, other-oa)
- White Rose Research Online (University of Leeds, The University of Sheffield, University of York) (acceptedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Bristol Research (University of Bristol) (submittedVersion, other-oa)
- Brunel University Research Archive (BURA) (Brunel University London) (submittedVersion)
- Site cant be reached (submittedVersion, other-oa)
- PuSH - Publication Server of Helmholtz Zentrum München (submittedVersion)
- The Sydney eScholarship Repository (The University of Sydney) (submittedVersion)
- UEA Digital Repository (University of East Anglia) (submittedVersion)
- Funders
- University of Essex
- Wellcome Trust (MC_UU_00011/1, MC_UU_00011/4, WT 098051, 213422/Z/18/Z, 206194)
- Understanding Society
- National Institute for Health and Care Research (206194, MC_UU_00011/4, MC_UU_00011/1, WT098051)
- Versus Arthritis (18030)
- Medical Research Council (MC_UU_00011/4, MR/N01104X/1, MR/N01104X/2, MC_PC_17228, WT098051, MC_UU_00011/1, MC_UU_00011/1 and MC_UU_00011/4, MC_UU_00011)
- Economic and Social Research Council (ES/H029745/1, ES/S008349/1)
- NIHR Cambridge Biomedical Research Centre
- Topics
- Health Sciences › Medicine › Rheumatology › Osteoarthritis Treatment and Mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic Associations and Epidemiology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic Mapping and Diversity in Plants and Animals
- Keywords
- osteoarthritis, knee osteoarthritis, hip osteoarthritis, genetic susceptibility loci, therapeutic target, effector genes, expression quantitative trait loci, colocalization, collagen synthesis, extracellular matrix, TGF-β1, FGF18, cathepsin K, interleukin-11, animal models
- MeSH terms
- Adult, Aged, Female, United Kingdom, Humans, Male, Middle Aged, Osteoarthritis, Hip, Case-Control Studies, Biological Specimen Banks, Genetic Predisposition to Disease, Polymorphism, Single Nucleotide, Quantitative Trait Loci, Genome-Wide Association Study
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