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Evaluating the Utilities of Foundation Models in Single‐Cell Data Analysis

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Systemic lupus erythematosus genetics: insights into pathogenesis and implications for therapy

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The influence of HLA genetic variation on plasma protein expression

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Identifying genetic variants that influence the abundance of cell states in single-cell data

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Historical perspective and future directions: computational science in immuno-oncology

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Proteome characterization of extracellular vesicles from human milk: Uncovering the surfaceome by a lipid‐based protein immobilization technology

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The effect of type 1 diabetes protection and susceptibility associated HLA class II genotypes on DNA methylation in immune cells

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The genetic basis of autoimmunity seen through the lens of T cell functional traits

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Evaluating the Utilities of Large Language Models in Single-cell Data AnalysisPreprint

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The HLA region in ANCA-associated vasculitis: characterisation of genetic associations in a Scandinavian patient population

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Modeling heterogeneity in single-cell perturbation states enhances detection of response eQTLs

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Genome-wide identification of cell type-specific susceptibility genes for Juvenile dermatomyositis through the analysis of N 6 -methyladenosine-associated SNPs

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Understanding rheumatic disease through continuous cell state analysis

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Mapping dynamic regulation of gene expression using single-cell transcriptomics and application to complex disease genetics

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HLA-DQB1*03:01 strongly affects age of onset of type 1 narcolepsy independently of DQA1 and ethnicity

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Decoding the genetic landscape of juvenile dermatomyositis: insights from phosphorylation-associated single nucleotide polymorphisms

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Evolution of the tuberculin skin test reveals generalisable Mtb-reactive T cell metaclones

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Somatic epimutations cap genetic determinism in the human diploid chromatin epigenome

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Deciphering cell-specific genetic insights: Unraveling the immunogenetic landscape of systemic lupus erythematosus

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A single-cell genetic colocalization test improves power and resolves disease-mediating cell typesPreprint

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Early and late RNA eQTL are driven by different genetic mechanisms

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Exploring the shared genetic architecture between periodontitis and cardiovascular disease

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Evolution of T cell responses in the tuberculin skin test reveals generalisable Mtb-reactive T cell metaclonesPreprint

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Integrative mendelian randomization approaches for therapeutic target prioritisation in immune-mediated diseases

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Taming the HLA for single-cell genomics

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Single-cell transcriptome profiling reveals cell type-specific variation and development in HLA expression of human skin.

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Single-cell RNA sequencing identifies progenitor dysfunction, inflammation and premature aging in ex vivo airway epithelium-derived from transplant recipientsPreprint

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SPLASH: a statistical, reference-free genomic algorithm unifies biological discoveryPreprint

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Quantifying HLA transcripts by genotype in chimeric mixtures at single-cell resolutionPreprint

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The interactions between HLA alleles and immune indicators were associated with the risk of rheumatoid arthritis

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scHG: a supercell framework with high-order graph learning enables hyper-fast multi-omics analysisPreprint

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Division state reveals hidden genetic regulation during T cell activation and identifies immune disease–linked gene programmesPreprint

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scHG: A supercell framework with high-order graph learning enables scalable multi-omics analysis

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Multi-Omics Identification of Key Immune Molecules in Gestational Diabetes Mellitus: FKBP5 and HLA-DQA1 as Candidate Biomarkers

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Decoding Immune Regulation: From Genetic Variation to Mechanism Through Single-Cell Genomics

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Genotype–phenotype correlations in autoimmune and autoinflammatory diseases: An NGS-based immunogenetic cohort study

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Risk stratification for immune checkpoint inhibitor rechallenge after acute kidney injury: towards a precision medicine framework

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Identifying the causal allele in the CD40 autoimmune locus enables discovery of context-specific trans-effects in B cellsPreprint

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Rheumatoid Arthritis in Adults

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Maternal and Fetal HLA Heterozygosity in Preeclampsia: Insights From a Large Multi‐Ancestry Pregnancy Cohort

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Sex-stratified and interaction multi-omics analysis of DNA methylation and gene expression in asthmaPreprint

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HLA class I and II polymorphisms in pediatric neuroblastoma: mechanistic links to immune surveillance, tumor evolution, and clinical translation

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Allele-specific expression changes dynamically during T cell activation in HLA and other autoimmune loci

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Taming the HLA for single-cell genomics

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Regulation of HLA class I expression by non-coding gene variations

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