Bifunctional small molecules that mediate the degradation of extracellular proteins
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Abstract
Targeted protein degradation (TPD) has emerged as a promising therapeutic strategy. Most TPD technologies use the ubiquitin-proteasome system, and are therefore limited to targeting intracellular proteins. To address this limitation, we developed a class of modular, bifunctional synthetic molecules called MoDE-As (molecular degraders of extracellular proteins through the asialoglycoprotein receptor (ASGPR)), which mediate the degradation of extracellular proteins. MoDE-A molecules mediate the formation of a ternary complex between a target protein and ASGPR on hepatocytes. The target protein is then endocytosed and degraded by lysosomal proteases. We demonstrated the modularity of the MoDE-A technology by synthesizing molecules that induce depletion of both antibody and proinflammatory cytokine proteins. These data show experimental evidence that nonproteinogenic, synthetic molecules can enable TPD of extracellular proteins in vitro and in vivo. We believe that TPD mediated by the MoDE-A technology will have widespread applications for disease treatment.
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MoDE-As are molecular degraders that degrade extracellular proteins via ASGPR, comprising three GalNAc ligands, a POI binding element, and a PEG spacer; in vivo and in vitro results demonstrated that MoDE-A molecules facilitated rapid clearance of α-DNP antibodies or cytokine MIF from circulation, and MoDE-A is the first molecule shown to effectively mediate extracellular protein degradation both
“MoDE-As, or molecular degraders that degrade extracellular proteins via the asialoglycoprotein receptor (ASGPR), represent a novel extracellular protein degradation technology initially reported by Professor David A. Spiegel of Yale University. MoDE-As comprise three GalNAc ligands recognized by ASGPR, a protein-of-interest (POI) binding element, and a polyethylene glycol (PEG) spacer fragment”
From Recent advances in targeting the “undruggable” proteins: from drug discovery to clinical trials (2023) · cites this paper as [545]
Cites
TNF biology, pathogenic mechanisms and emerging therapeutic strategies
Kalliolias, G. D., & Ivashkiv, L. B. (2015) · Nature Reviews Rheumatology · doi:10.1038/nrrheum.2015.169 · Cited by 1,390 · see citing works
Targeted delivery of RNAi therapeutics with endogenous and exogenous ligand-based mechanisms
Akinc, A., Querbes, W., De, S., Qin, J., Frank-Kamenetsky, M., Jayaprakash, K. N., Jayaraman, M., Rajeev, K. G., Cantley, W. L., Dorkin, J. R., et al. (2010) · Molecular Therapy · doi:10.1038/mt.2010.85 · Cited by 1,261 · see citing works
Lysosome-targeting chimaeras for degradation of extracellular proteins
Banik, S. M., Pedram, K., Wisnovsky, S., Ahn, G., Riley, N. M., & Bertozzi, C. R. (2020) · Nature · doi:10.1038/s41586-020-2545-9 · Cited by 1,199 · see citing works
PROTACs: great opportunities for academia and industry
Sun, X., Gao, H., Yang, Y., He, M., Wu, Y., Song, Y.-G., Tong, Y., & Rao, Y. (2019) · Signal Transduction and Targeted Therapy · doi:10.1038/s41392-019-0101-6 · Cited by 651 · see citing works
Asialoglycoprotein receptor mediated hepatocyte targeting — Strategies and applications
D’souza, A. A., & Devarajan, P. V. (2015) · Journal of Controlled Release · doi:10.1016/j.jconrel.2015.02.022 · Cited by 624 · see citing works
Cotton, A. D., Nguyen, D. P., Gramespacher, J. A., Seiple, I. B., & Wells, J. A. (2021) · Journal of the American Chemical Society · doi:10.1021/jacs.0c10008 · Cited by 551 · see citing works
Wall, D. A., Wilson, G., & Hubbard, A. L. (1980) · Cell · doi:10.1016/0092-8674(80)90116-6 · Cited by 484 · see citing works
A Comprehensive Mathematical Model for Three-Body Binding Equilibria
Douglass, E. F., Miller, C. J., Sparer, G., Shapiro, H., & Spiegel, D. A. (2013) · Journal of the American Chemical Society · doi:10.1021/ja311795d · Cited by 472 · see citing works
Self-citationThe Ashwell-Morell receptor regulates hepatic thrombopoietin production via JAK2-STAT3 signaling
Grozovsky, R., Begonja, A. J., Liu, K., Visner, G. A., Hartwig, J. H., Falet, H., & Hoffmeister, K. M. (2014) · Nature Medicine · doi:10.1038/nm.3770 · Cited by 338 · see citing works
Baenziger, J., & Fiete, D. (1980) · Cell · doi:10.1016/0092-8674(80)90371-2 · Cited by 248 · see citing works
Rensen, P. C. N., Sliedregt, L. A. J. M., Ferns, M., Kieviet, E., van Rossenberg, S. M. W., van Leeuwen, S. H., van Berkel, T. J. C., & Biessen, E. A. L. (2001) · Journal of Biological Chemistry · doi:10.1074/jbc.m101786200 · Cited by 231 · see citing works
Development of Triantennary N‑Acetylgalactosamine Conjugates as Degraders for Extracellular Proteins
Zhou, Y., Teng, P., Montgomery, N. T., Li, X., & Tang, W. (2021) · ACS Central Science · doi:10.1021/acscentsci.1c00146 · Cited by 228 · see citing works
Matsuda, S., Keiser, K., Nair, J. K., Charissé, K., Manoharan, R. M., Kretschmer, P., Peng, C. G., Kel’in, A. V., Pachamuthu, K., Willoughby, J. L. S., et al. (2015) · ACS Chemical Biology · doi:10.1021/cb501028c · Cited by 222 · see citing works
Weigel, P. H., & Oka, J. A. (1981) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)69656-0 · Cited by 198 · see citing works
Schwartz, A. L., Bolognesi, A., & Fridovich, S. E. (1984) · The Journal of Cell Biology · doi:10.1083/jcb.98.2.732 · Cited by 187 · see citing works
Generation of hybridomas secreting murine reaginic antibodies of anti-DNP specificity.
Eshhar, Z., Ofarim, M., & Waks, T. (1980) · The Journal of Immunology · doi:10.4049/jimmunol.124.2.775 · Cited by 176 · see citing works
Fate of receptor and ligand during endocytosis of asialoglycoproteins by isolated hepatocytes.
Bridges, K. R., Harford, J. B., Ashwell, G., & Klausner, R. D. (1982) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.79.2.350 · Cited by 175 · see citing works
Bilsborrow, J. B., Doherty, E. H., Tilstam, P. V., & Bucala, R. (2019) · Expert Opinion on Therapeutic Targets · doi:10.1080/14728222.2019.1656718 · Cited by 169 · see citing works
Hepatocyte entry leads to degradation of autoreactive CD8 T cells
Benseler, V., Warren, A., Vo, M., Holz, L. E., Tay, S. S., Le Couteur, D. G., Breen, E., Allison, A. C., van Rooijen, N., McGuffog, C., et al. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1112251108 · Cited by 164 · see citing works
Tanowitz, M., Hettrick, L. A., Revenko, A. S., Kinberger, G. A., Prakash, T. P., & Seth, P. P. (2017) · Nucleic Acids Research · doi:10.1093/nar/gkx960 · Cited by 161 · see citing works
Glycoprotein catabolism in rat liver. Lysosomal digestion of iodinated asialo-fetuin
LaBadie, J. H., Chapman, K. P., & Aronson, N. N. (1975) · Biochemical Journal · doi:10.1042/bj1520271 · Cited by 144 · see citing works
Grewal, P. K. (2010) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/s0076-6879(10)79013-3 · Cited by 136 · see citing works
Steirer, L. M., Park, E. I., Townsend, R. R., & Baenziger, J. (2008) · Journal of Biological Chemistry · doi:10.1074/jbc.m808689200 · Cited by 125 · see citing works
Fetuin ‐ an old friend revisited
Brown, W. M., Dzięgielewska, K. M., Saunders, N. R., & Møsllgård, K. (1992) · BioEssays · doi:10.1002/bies.950141105 · Cited by 125 · see citing works
Hepatocyte Targeting and Intracellular Copper Chelation by a Thiol-Containing Glycocyclopeptide
Pujol, A. M., Cuillel, M., Renaudet, O., Lebrun, C., Charbonnier, P., Cassio, D., Gateau, C., Dumy, P., Mintz, E., & Delangle, P. (2010) · Journal of the American Chemical Society · doi:10.1021/ja106206z · Cited by 123 · see citing works
Well-Defined Multivalent Ligands for Hepatocytes Targeting via Asialoglycoprotein Receptor
Huang, X., Leroux, J., & Castagner, B. (2016) · Bioconjugate Chemistry · doi:10.1021/acs.bioconjchem.6b00651 · Cited by 120 · see citing works
Expression of Asialoglycoprotein Receptor 1 in Human Hepatocellular Carcinoma
Shi, B., Abrams, M. T., & Sepp‐Lorenzino, L. (2013) · Journal of Histochemistry & Cytochemistry · doi:10.1369/0022155413503662 · Cited by 119 · see citing works
An intrinsic mechanism of secreted protein aging and turnover
Yang, W. H., Aziz, P. V., Heithoff, D. M., Mahan, M. J., Smith, J. W., & Marth, J. D. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1515464112 · Cited by 110 · see citing works
Guo, S., Zhang, X., Zheng, M., Zhang, X., Min, C., Wang, Z., Cheon, S. H., Oak, M., Nah, S.-Y., & Kim, K. (2015) · Biochimica et Biophysica Acta (BBA) - Biomembranes · doi:10.1016/j.bbamem.2015.05.024 · Cited by 109 · see citing works
Glycomimetic Ligands for the Human Asialoglycoprotein Receptor
Mamidyala, S. K., Dutta, S., Chrunyk, B. A., Préville, C., Wang, H., Withka, J. M., McColl, A. S., Subashi, T. A., Hawrylik, S. J., Griffor, M. C., et al. (2012) · Journal of the American Chemical Society · doi:10.1021/ja2104679 · Cited by 105 · see citing works
Nakajima, H., Takenaka, M., Kaimori, J.-Y., Hamano, T., Iwatani, H., Sugaya, T., Ito, T., Hori, M., & Imai, E. (2004) · Journal of the American Society of Nephrology · doi:10.1097/01.asn.0000109672.83594.02 · Cited by 97 · see citing works
Oka, J. A., Christensen, M. D., & Weigel, P. H. (1989) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)80168-5 · Cited by 94 · see citing works
Merwin, J. R., Noell, G. S., Thomas, W. L., Chiou, H. C., DeRome, M., McKee, T. D., Spitalny, G. L., & Findeis, M. A. (1994) · Bioconjugate Chemistry · doi:10.1021/bc00030a017 · Cited by 93 · see citing works
Clathrin-mediated Endocytosis and Lysosomal Cleavage of Hepatitis B Virus Capsid-like Core Particles
Cooper, A., & Shaul, Y. (2006) · Journal of Biological Chemistry · doi:10.1074/jbc.m601418200 · Cited by 89 · see citing works
Ba, Q., Zhou, N., Duan, J., Chen, T., Hao, M., Yang, X., Li, J., Yin, J., Chu, R., & Wang, H. (2012) · PLoS ONE · doi:10.1371/journal.pone.0042703 · Cited by 84 · see citing works
Maidorn, R., Cragoe, E. J., & Tannock, I. F. (1993) · British Journal of Cancer · doi:10.1038/bjc.1993.56 · Cited by 82 · see citing works
Dziedzic, P., Cisneros, J. A., Robertson, M. J., Hare, A. A., Danford, N. E., Baxter, R. H. G., & Jorgensen, W. L. (2015) · Journal of the American Chemical Society · doi:10.1021/ja512112j · Cited by 82 · see citing works
Martínez‐Fábregas, J., Prescott, A. R., van Kasteren, S. I., Pedrioli, D. M. L., McLean, W. H. I., Moles, A., Reinheckel, T., Poli, V., & Watts, C. K. W. (2018) · Nature Communications · doi:10.1038/s41467-018-07741-6 · Cited by 81 · see citing works
The role of sialic acid in determining the life-span of circulating cells and glycoproteins
Bocci, V. A. (1976) · Cellular and Molecular Life Sciences · doi:10.1007/bf01937727 · Cited by 72 · see citing works
Protein Overload Activates Proximal Tubular Cells to Release Vasoactive and Inflammatory Mediators
Zoja, C., Benigni, A., & Remuzzi, G. (1999) · Nephron Experimental Nephrology · doi:10.1159/000020640 · Cited by 69 · see citing works
Cervia, L. D., Chang, C., Wang, L., & Yuan, F. (2017) · PLoS ONE · doi:10.1371/journal.pone.0171699 · Cited by 60 · see citing works
Zegers, M. M., Zaal, K. J. M., van IJzendoorn, S. C. D., Klappe, K., & Hoekstra, D. (1998) · Molecular Biology of the Cell · doi:10.1091/mbc.9.7.1939 · Cited by 56 · see citing works
Mi, Y., Lin, A., Fiete, D., Steirer, L. M., & Baenziger, J. (2014) · Journal of Biological Chemistry · doi:10.1074/jbc.m113.544973 · Cited by 53 · see citing works
Cisneros, J. A., Robertson, M. J., Valhondo, M., & Jorgensen, W. L. (2016) · Journal of the American Chemical Society · doi:10.1021/jacs.6b04910 · Cited by 43 · see citing works
Ye, S. Q., Reardon, C. A., & Getz, G. S. (1993) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)52902-1 · Cited by 39 · see citing works
Onizuka, T., Shimizu, H., Moriwaki, Y., Nakano, T., Kanai, S., Shimada, I., & Takahashi, H. K. (2012) · FEBS Journal · doi:10.1111/j.1742-4658.2012.08643.x · Cited by 39 · see citing works
Hepatocyte cytotoxicity is facilitated by asialoglycoprotein receptor
Guy, C. S., Rankin, S. L., & Michalak, T. I. (2011) · Hepatology · doi:10.1002/hep.24477 · Cited by 35 · see citing works
Fernandes, C. L., Ligabue‐Braun, R., & Verli, H. (2015) · Glycobiology · doi:10.1093/glycob/cwv041 · Cited by 35 · see citing works
The effect of monensin and chloroquine on the endocytosis and toxicity of chimeric toxins
Ippoliti, R., Ginobbi, P., Lendaro, E., D'Agostino, I., Ombres, D., Benedetti, P. A., Brunori, M., & Citro, G. (1998) · Cellular and Molecular Life Sciences · doi:10.1007/s000180050214 · Cited by 25 · see citing works
A Review of PCSK9 Inhibitors and their Effects on Cardiovascular Diseases
Chen, B., Shi, X., Cui, Y., Hou, A., & Zhao, P. (2019) · Current Topics in Medicinal Chemistry · doi:10.2174/1568026619666190809094203 · Cited by 22 · see citing works
Biessen, E. A. L., Valentijn, A. R. P. M., de Vrueh, R. L. A., de Bilt, E. V., Sliedregt, L. A. J. M., Prince, P., Bijsterbosch, M. K., BOOM, J. H. V., MAREL, G. A. V. D., Abrahams, P. J., et al. (2000) · The FASEB Journal · doi:10.1096/fj.99-0887com · Cited by 19 · see citing works
Half‐Life Extension through PEGylation
Jevševar, S., & Kunstelj, M. (2012) · doi:10.1002/9783527644827.ch3 · Cited by 6 · see citing works
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1 of the 53 references couldn’t be matched to a known paper.
Cited by
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Recent advances in targeting the “undruggable” proteins: from drug discovery to clinical trials
Xie, X., Yu, T., Li, X., Zhang, N., Foster, L. J., Peng, C., Huang, W., & He, G. (2023) · Signal Transduction and Targeted Therapy · doi:10.1038/s41392-023-01589-z · Cited by 396 · see citing works
Major advances in targeted protein degradation: PROTACs, LYTACs, and MADTACs
Alabi, S. B., & Crews, C. M. (2021) · Journal of Biological Chemistry · doi:10.1016/j.jbc.2021.100647 · Cited by 271 · see citing works
Pance, K., Gramespacher, J. A., Byrnes, J. R., Salangsang, F., Serrano, J.-A. C., Cotton, A. D., Steri, V., & Wells, J. A. (2023) · Nature Biotechnology · doi:10.1038/s41587-022-01456-2 · Cited by 265 · see citing works
Development of Triantennary N‑Acetylgalactosamine Conjugates as Degraders for Extracellular Proteins
Zhou, Y., Teng, P., Montgomery, N. T., Li, X., & Tang, W. (2021) · ACS Central Science · doi:10.1021/acscentsci.1c00146 · Cited by 228 · see citing works
Targeted protein degradation for cancer therapy
Hinterndorfer, M., Spiteri, V. A., Ciulli, A., & Winter, G. E. (2025) · Nature reviews. Cancer · doi:10.1038/s41568-025-00817-8 · Cited by 245 · see citing works
Proximity-Based Modalities for Biology and Medicine
Liu, X., & Ciulli, A. (2023) · ACS Central Science · doi:10.1021/acscentsci.3c00395 · Cited by 204 · see citing works
Ahn, G., Riley, N. M., Kamber, R. A., Wisnovsky, S., von Hase, S. M., Bassik, M. C., Banik, S. M., & Bertozzi, C. R. (2023) · Science · doi:10.1126/science.adf6249 · Cited by 197 · see citing works
Transferrin receptor targeting chimeras for membrane protein degradation
Zhang, D., Duque-Jimenez, J., Facchinetti, F., Brixi, G., Rhee, K., Feng, W. W., Janne, P. A., & Zhou, X. X. (2024) · Nature · doi:10.1038/s41586-024-07947-3 · Cited by 205 · see citing works
Extracellular targeted protein degradation: an emerging modality for drug discovery
Wells, J. A., & Kumru, K. S. (2023) · Nature Reviews Drug Discovery · doi:10.1038/s41573-023-00833-z · Cited by 190 · see citing works
Bifunctional Compounds as Molecular Degraders for Integrin-Facilitated Targeted Protein Degradation
Zheng, J., He, W., Li, J., Feng, X., Li, Y., Cheng, B., Zhou, Y., Li, M., Liu, K., Shao, X., et al. (2022) · Journal of the American Chemical Society · doi:10.1021/jacs.2c08367 · Cited by 173 · see citing works
Emerging degrader technologies engaging lysosomal pathways
Ding, Y., Xing, D., Fei, Y., & Lu, B. (2022) · Chemical Society Reviews · doi:10.1039/d2cs00624c · Cited by 162 · see citing works
Aptamer‐LYTACs for Targeted Degradation of Extracellular and Membrane Proteins
Wu, Y., Lin, B., Lu, Y., Li, L., Deng, K., Zhang, S., Zhang, H., Yang, C. J., & Zhu, Z. (2023) · Angewandte Chemie International Edition · doi:10.1002/anie.202218106 · Cited by 141 · see citing works
Glycomimetics for the inhibition and modulation of lectins
Leusmann, S., Ménová, P., Shanina, E., Titz, A., & Rademacher, C. (2023) · Chemical Society Reviews · doi:10.1039/d2cs00954d · Cited by 135 · see citing works
Targeted Protein Degradation via Lysosomes
Paudel, R. R., Lu, D., Chowdhury, S. R., Monroy, E. Y., & Wang, J. (2022) · Biochemistry · doi:10.1021/acs.biochem.2c00310 · Cited by 120 · see citing works
Targeted protein degradation directly engaging lysosomes or proteasomes
Kim, J., Byun, I., Kim, D. Y., Joh, H., Kim, H. J., & Lee, M. J. (2024) · Chemical Society Reviews · doi:10.1039/d3cs00344b · Cited by 106 · see citing works
Targeting the undruggables—the power of protein degraders
Zhang, C., Liu, Y., Li, G., Yang, Z., Han, C., Sun, X., Sheng, C., Ding, K., & Rao, Y. (2024) · 中国科学通报:英文版 · doi:10.1016/j.scib.2024.03.056 · Cited by 108 · see citing works
Glycobiology of rheumatic diseases
Kissel, T., Toes, R. E. M., Huizinga, T. W. J., & Wuhrer, M. (2022) · Nature Reviews Rheumatology · doi:10.1038/s41584-022-00867-4 · Cited by 102 · see citing works
Emerging protein degradation strategies: expanding the scope to extracellular and membrane proteins
Lin, J., Jin, J., Shen, Y., Zhang, L., Gong, G., Bian, H., Chen, H., Nagle, D. G., Wu, Y., Zhang, W., et al. (2021) · Theranostics · doi:10.7150/thno.62686 · Cited by 98 · see citing works
Ahn, G., Banik, S. M., & Bertozzi, C. R. (2021) · Cell chemical biology · doi:10.1016/j.chembiol.2021.02.024 · Cited by 96 · see citing works
Zhang, B., Brahma, R. K., Zhu, L., Feng, J., Hu, S., Qian, L., Du, S., Yao, S. Q., & Ge, J. (2023) · Journal of the American Chemical Society · doi:10.1021/jacs.3c08886 · Cited by 85 · see citing works
Dendronized DNA Chimeras Harness Scavenger Receptors To Degrade Cell Membrane Proteins
Zhu, C., Wang, W., Wang, Y., Zhang, Y., & Li, J. (2023) · Angewandte Chemie International Edition · doi:10.1002/anie.202300694 · Cited by 85 · see citing works
DNA-encoded library-enabled discovery of proximity-inducing small molecules
Mason, J. W., Chow, Y. T., Hudson, L., Tutter, A., Michaud, G., Westphal, M. V., Shu, W., Ma, X., Tan, Z. Y., Coley, C. W., et al. (2024) · Nature Chemical Biology · doi:10.1038/s41589-023-01458-4 · Cited by 83 · see citing works
Zhou, Y., Li, C., Chen, X., Zhao, Y., Liao, Y., Huang, P., Wu, W., Nieto, N. S., Li, L., & Tang, W. (2024) · Nature Communications · doi:10.1038/s41467-024-52685-9 · Cited by 80 · see citing works
Cell Membrane as A Promising Therapeutic Target: From Materials Design to Biomedical Applications
Wu, X., Hu, J., & Yoon, J. (2024) · Angewandte Chemie International Edition · doi:10.1002/anie.202400249 · Cited by 77 · see citing works
Antiviral PROTACs: Opportunity borne with challenge
Liang, J., Wu, Y., Lan, K., Dong, C., Wu, S., Li, S., & Zhou, H. (2023) · Cell Insight · doi:10.1016/j.cellin.2023.100092 · Cited by 74 · see citing works
Xing, Y., Li, J., Wang, L., Zhu, Z., Yan, J., Liu, Y., & Liu, Q. (2025) · Advanced Materials · doi:10.1002/adma.202417942 · Cited by 73 · see citing works
Yu, J., Li, H., Fang, T., Yun, C., Liu, X., Xu, J., Jiang, X., & Cai, X. (2023) · Journal of the American Chemical Society · doi:10.1021/jacs.3c07687 · Cited by 71 · see citing works
Opportunities and challenges of protein-based targeted protein degradation
Shen, F., & Dassama, L. M. K. (2023) · Chemical Science · doi:10.1039/d3sc02361c · Cited by 69 · see citing works
Targeted protein degradation in cancers: Orthodox PROTACs and beyond
Li, J., Chen, X., Lü, A., & Liang, C. (2023) · The Innovation · doi:10.1016/j.xinn.2023.100413 · Cited by 66 · see citing works
Tan, X., Huang, Z., Pei, H., Jia, Z., & Zheng, J. (2024) · iScience · doi:10.1016/j.isci.2024.110712 · Cited by 66 · see citing works
Hua, L., Zhang, Q., Zhu, X., Wang, R., You, Q., & Wang, L. (2022) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.2c00316 · Cited by 66 · see citing works
Wang, Q., Yang, X., Yuan, R., Shen, A., Wang, P., Li, H., Zhang, J., Tian, C., Jiang, Z., Li, W., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-46130-0 · Cited by 63 · see citing works
Nano‐LYTACs for Degradation of Membrane Proteins and Inhibition of CD24/Siglec‐10 Signaling Pathway
Wang, K., Yu, A., Liu, K., Feng, C., Hou, Y., Chen, J., Ma, S., Huang, L., & Dai, X. (2023) · Advanced Science · doi:10.1002/advs.202300288 · Cited by 59 · see citing works
Liu, Z.-Q., Deng, Q.-Q., Qin, G., Yang, J., Zhang, H., Ren, J.-S., & Qu, X.-G. (2023) · Chem · doi:10.1016/j.chempr.2023.06.003 · Cited by 54 · see citing works
Targeted degradation of extracellular secreted and membrane proteins
Chen, X., Zhou, Y., Zhao, Y., & Tang, W. (2023) · Trends in Pharmacological Sciences · doi:10.1016/j.tips.2023.08.013 · Cited by 59 · see citing works
Novel approaches to targeted protein degradation technologies in drug discovery
Xue, Y., Bolinger, A. A., & Zhou, J. (2023) · Expert Opinion on Drug Discovery · doi:10.1080/17460441.2023.2187777 · Cited by 59 · see citing works
Expanding the horizons of targeted protein degradation: A non-small molecule perspective
Huang, X., Wu, F., Ye, J., Wang, L., Wang, X., Li, X., & He, G. (2024) · Acta Pharmaceutica Sinica B · doi:10.1016/j.apsb.2024.01.010 · Cited by 58 · see citing works
Non-small molecule PROTACs (NSM-PROTACs): Protein degradation kaleidoscope
Ma, S., Ji, J., Tong, Y., Zhu, Y., Dou, J., Zhang, X., Xu, S., Zhu, T., Xu, X., You, Q., et al. (2022) · Acta Pharmaceutica Sinica B · doi:10.1016/j.apsb.2022.02.022 · Cited by 57 · see citing works
Hepatocyte targeting <i>via</i> the asialoglycoprotein receptor
Ramírez-Cortés, F., & Ménová, P. (2025) · RSC Medicinal Chemistry · doi:10.1039/d4md00652f · Cited by 55 · see citing works
Surface engineering of nanoparticles for precision medicine
Zheng, J., Sun, Y., Shen, Y., & Zhou, Z. (2025) · Precision medicine and engineering. · doi:10.1016/j.preme.2025.100037 · Cited by 54 · see citing works
Zhong, Y., Chi, F., Wu, H., Liu, Y., Xie, Z., Huang, W., Shi, W., & Qian, H. (2022) · European Journal of Medicinal Chemistry · doi:10.1016/j.ejmech.2022.114142 · Cited by 51 · see citing works
Zhang, Z., Leng, X., Zhai, Y. Y., Zhang, X. L., Sun, Z. W., Xiao, J. Y., Lu, J. F., Liu, K., Xia, B., Gao, Q., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-46135-9 · Cited by 52 · see citing works
Zhang, X., Liu, H., He, J., Ou, C., Donahue, T. C., Muthana, M. M., Su, L., & Wang, L. (2022) · ACS Chemical Biology · doi:10.1021/acschembio.1c00751 · Cited by 48 · see citing works
Targeted Lysosomal Degradation of Secreted and Cell Surface Proteins through the LRP-1 Pathway
Loppinet, E., Besser, H. A., Lee, C. E., Zhang, W., Cui, B., & Khosla, C. (2023) · Journal of the American Chemical Society · doi:10.1021/jacs.3c05109 · Cited by 48 · see citing works
Engineered platelets as targeted protein degraders and application to breast cancer models
Chen, Y., Pal, S., Li, W., Liu, F., Yuan, S., & Hu, Q. (2024) · Nature Biotechnology · doi:10.1038/s41587-024-02494-8 · Cited by 47 · see citing works
Application of Novel Degraders Employing Autophagy for Expediting Medicinal Research
Li, X., Liu, Q., Xie, X., Peng, C., Pang, Q., Liu, B., & Han, B. (2023) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.2c01712 · Cited by 46 · see citing works
Zhang, Y., Liu, H., Zhen, W., Jiang, T., & Cui, J. (2025) · Carbohydrate Research · doi:10.1016/j.carres.2025.109426 · Cited by 46 · see citing works
Proximity-inducing modalities: the past, present, and future
Singh, S., Tian, W., Severance, Z. C., Chaudhary, S. K., Anokhina, V. S., Mondal, B., Pergu, R., Singh, P. R., Dhawa, U., Singha, S., et al. (2023) · Chemical Society Reviews · doi:10.1039/d2cs00943a · Cited by 45 · see citing works
Directed evolution of genetically encoded LYTACs for cell-mediated delivery
Yang, J. L., Yamada‐Hunter, S. A., Labanieh, L., Sotillo, E., Cheah, J. S., Roberts, D. S., Mackall, C. L., Bertozzi, C. R., & Ting, A. Y. (2024) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2320053121 · Cited by 44 · see citing works
Nanoparticle‐Mediated Targeted Protein Degradation: An Emerging Therapeutics Technology
Baker, A., Ho, A. P. T., Itzhaki, L. S., & Fruk, L. (2025) · Angewandte Chemie International Edition · doi:10.1002/anie.202503958 · Cited by 44 · see citing works
Polyvalent folate receptor-targeting chimeras for degradation of membrane proteins
Xiao, D., Dong, J., Xie, F., Feng, X., Wang, J., Xu, X., Tang, B., Sun, C., Wang, Y., Zhong, W., et al. (2025) · Nature Chemical Biology · doi:10.1038/s41589-025-01924-1 · Cited by 44 · see citing works
Extracellular protein homeostasis in neurodegenerative diseases
Wilson, M. R., Satapathy, S., & Vendruscolo, M. (2023) · Nature Reviews Neurology · doi:10.1038/s41582-023-00786-2 · Cited by 42 · see citing works
The application of PROTAC in HDAC
Chen, S., Zheng, Y., Liang, B., Yin, Y., Yao, J., Wang, Q., Liu, Y., & Neamati, N. (2023) · European Journal of Medicinal Chemistry · doi:10.1016/j.ejmech.2023.115746 · Cited by 43 · see citing works
PROTACS: A technology with a gold rush-like atmosphere
Wang, Y., Lan, L., Wang, M., Zhang, J., Gao, Y., Shi, L., & Sun, L. (2022) · European Journal of Medicinal Chemistry · doi:10.1016/j.ejmech.2022.115037 · Cited by 42 · see citing works
Zeng, Y., Xiao, J., Xu, Y., Fan, W., Tian, L., Gao, Y., Chen, Y., & Hu, Y. (2023) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.3c00828 · Cited by 42 · see citing works
Induced proximity-based therapeutic modalities
King, E. A., Meyers, M., & Nomura, D. K. (2025) · Nature Reviews Drug Discovery · doi:10.1038/s41573-025-01316-z · Cited by 50 · see citing works
Targeted protein degradation in the transmembrane and extracellular space
Zhu, R., Zhang, H., & Chen, P. R. (2025) · Science · doi:10.1126/science.adx5094 · Cited by 42 · see citing works
Emerging Pharmacotherapeutic Strategies to Overcome Undruggable Proteins in Cancer
Lu, Y., Yang, Y., Zhu, G., Zeng, H., Fan, Y., Guo, F., Xu, D., Wang, B., Chen, D., & Ge, G. (2023) · International Journal of Biological Sciences · doi:10.7150/ijbs.83026 · Cited by 41 · see citing works
Protein structure-based in-silico approaches to drug discovery: Guide to COVID-19 therapeutics
Gupta, Y. A., Savytskyi, O. V., Coban, M., Venugopal, A., Pleqi, V., Weber, C. A., Chitale, R. A., Durvasula, R. V., Hopkins, C. E., Kempaiah, P., et al. (2022) · Molecular Aspects of Medicine · doi:10.1016/j.mam.2022.101151 · Cited by 40 · see citing works
Clearance of plasma PCSK9 via the asialoglycoprotein receptor mediated by heterobifunctional ligands
Bagdanoff, J. T., Smith, T. M., Allan, M., O’Donnell, P. H., Nguyen, Z., Moore, E. A., Baird, J., Wang, S., Subramanian, V., Tigani, B., et al. (2023) · Cell chemical biology · doi:10.1016/j.chembiol.2022.12.003 · Cited by 40 · see citing works
Yao, S., Wang, Y., Tang, Q. J., Yin, Y., Geng, Y., Xu, L., Liang, S., Xiang, J., Fan, J., Tang, J., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-51720-z · Cited by 39 · see citing works
Targeted Protein Degradation Technology and Nanomedicine: Powerful Allies against Cancer
Lin, J., Liu, H., Wu, Y., Jin, J., Zhou, Y., Zhang, H., Nagle, D. G., Chen, H., Zhang, W., & Luan, X. (2023) · Small · doi:10.1002/smll.202207778 · Cited by 38 · see citing works
Gouda, M., Lv, J., Huang, Z., Chen, J., He, Y., & Li, X. (2024) · Biosensors and Bioelectronics · doi:10.1016/j.bios.2024.116504 · Cited by 38 · see citing works
New therapies on the horizon: Targeted protein degradation in neuroscience
Gregory, J. A., Hickey, C. M., Chavez, J. D., & Cacace, A. M. (2024) · Cell chemical biology · doi:10.1016/j.chembiol.2024.08.010 · Cited by 39 · see citing works
Exploiting E3 ubiquitin ligases to reeducate the tumor microenvironment for cancer therapy
Li, X.-M., Zhao, Z., Xiao, Y., Xia, Q., Zhou, P., Wang, S., Wu, H., & Hu, J. (2023) · Experimental Hematology and Oncology · doi:10.1186/s40164-023-00394-2 · Cited by 38 · see citing works
Targeted protein degradation: current molecular targets, localization, and strategies
Pliatsika, D., Blatter, C., & Riedl, R. (2024) · Drug Discovery Today · doi:10.1016/j.drudis.2024.104178 · Cited by 37 · see citing works
Development of Oligomeric Mannose-6-phosphonate Conjugates for Targeted Protein Degradation
Stevens, C. M., Zhou, Y., Teng, P., Rault, L. N., Liao, Y., & Tang, W. (2023) · ACS Medicinal Chemistry Letters · doi:10.1021/acsmedchemlett.2c00479 · Cited by 36 · see citing works
TAC‐tics for Leveraging Proximity Biology in Drug Discovery
Nalawansha, D. A., Mangano, K., den Besten, W., & Potts, P. R. (2023) · ChemBioChem · doi:10.1002/cbic.202300712 · Cited by 36 · see citing works
Targeted degradation of extracellular proteins: state of the art and diversity of degrader designs
Mamun, M. A. A., Bakunts, A. G., & Chernorudskiy, A. L. (2025) · Journal of Hematology & Oncology · doi:10.1186/s13045-025-01703-4 · Cited by 36 · see citing works
Targeted Protein Degradation: Clinical Advances in the Field of Oncology
Salama, A. K. A. A., Trkulja, M. V., Casanova, E., & Uras, I. Z. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms232315440 · Cited by 35 · see citing works
Methylarginine targeting chimeras for lysosomal degradation of intracellular proteins
Seabrook, L. J., Franco, C. N., Loy, C. A., Osman, J. M., Fredlender, C., Zimak, J., Campos, M., Nguyen, S. T., Watson, R. L., Levine, S. R., et al. (2024) · Nature Chemical Biology · doi:10.1038/s41589-024-01741-y · Cited by 32 · see citing works
Chemically engineered antibodies for autophagy-based receptor degradation
Cheng, B., Li, M., Zheng, J., Liang, J., Li, Y., Liang, R., Tian, H., Zhou, Z., Ding, L., Ren, J., et al. (2025) · Nature Chemical Biology · doi:10.1038/s41589-024-01803-1 · Cited by 31 · see citing works
Kim, D., Yang, G., Lim, C., Park, G., Lee, J., Sim, Y., & Ryu, J. (2025) · Advanced Science · doi:10.1002/advs.202503134 · Cited by 30 · see citing works
Biologics-based degraders — an expanding toolkit for targeted-protein degradation
VanDyke, D., Taylor, J. D., Kaeo, K. J., Hunt, J., & Spangler, J. B. (2022) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2022.102807 · Cited by 30 · see citing works
Su, J., Xiao, Y., Wei, L., Lei, H., Sun, F., Wang, W., Yin, J., Xiong, R., Li, S., Zhang, P., et al. (2024) · 中国科学通报:英文版 · doi:10.1016/j.scib.2024.01.019 · Cited by 29 · see citing works
Conjugation with glucagon like peptide-1 enables targeted protein degradation
Zhu, L., Zhou, Y., Zhang, B., Luo, Y., Chen, F., Yan, X., Cai, Y., Jiang, L., & Ge, J. (2023) · Bioorganic Chemistry · doi:10.1016/j.bioorg.2023.106908 · Cited by 28 · see citing works
Gao, J., Pang, Z., Wang, Q., Tan, Y., Li, Q., Tan, H., Chen, J., Yakufu, W., Wang, Z., Yang, H., et al. (2024) · Advanced Science · doi:10.1002/advs.202306388 · Cited by 28 · see citing works
He, W., Chen, C., Zheng, J., Li, Y., Shi, H., Zhou, Y., Li, M., Gong, P., Liu, K., Shao, X., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-62776-w · Cited by 28 · see citing works
Lysosome-targeting chimeras evolve
Paulk, J. (2021) · Nature Chemical Biology · doi:10.1038/s41589-021-00835-1 · Cited by 28 · see citing works
Recent advances in induced proximity modalities
Ng, C. S. C., & Banik, S. M. (2022) · Current Opinion in Chemical Biology · doi:10.1016/j.cbpa.2021.102107 · Cited by 28 · see citing works
Yang, C., Guan, Z., Pang, X., Tan, Z., Yang, X., Li, X., & Guan, F. (2022) · Cells · doi:10.3390/cells11172642 · Cited by 28 · see citing works
Donahue, T. C., Ou, C., Yang, Q., Flinko, R., Zhang, X., Zong, G., Lewis, G. K., & Wang, L. (2023) · ACS Chemical Biology · doi:10.1021/acschembio.3c00229 · Cited by 29 · see citing works
Wang, Z., Yuan, L., Liao, X., Guo, X., & Chen, J. (2024) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.3c02143 · Cited by 27 · see citing works
Hijacking Extracellular Targeted Protein Degrader–Drug Conjugates for Enhanced Drug Delivery
Zhao, F.-Z., Wu, Y., Schaefer, K., Zhang, Y., Miao, K., Yao, Z., Ganjave, S. D., Kumru, K., Peters-Clarke, T. M., Inague, A., et al. (2025) · Journal of the American Chemical Society · doi:10.1021/jacs.5c15047 · Cited by 24 · see citing works
IGF2 Peptide-Based LYTACs for Targeted Degradation of Extracellular and Transmembrane Proteins
Mikitiuk, M., Barczyński, J., Bielski, P., Arciniega, M., Tyrcha, U., Hec, A., Lipińska, A. D., Rychłowski, M., Holak, T. A., & Sitar, T. (2023) · Molecules · doi:10.3390/molecules28227519 · Cited by 25 · see citing works
Howell, R. A., Wang, S., Khambete, M., McDonald, D. M., & Spiegel, D. A. (2024) · Journal of the American Chemical Society · doi:10.1021/jacs.3c13320 · Cited by 26 · see citing works
Self-citationFang, Y., Zhang, Y., Bi, S., Peng, B., Wang, C., Ju, H., & Liu, Y. (2024) · Small · doi:10.1002/smll.202310039 · Cited by 25 · see citing works
Recent advances in developing targeted protein degraders
Cheng, B., Li, H., Peng, X., Chen, J., Shao, C., & Kong, Z. (2024) · European Journal of Medicinal Chemistry · doi:10.1016/j.ejmech.2024.117212 · Cited by 25 · see citing works
Bao, Y., Xu, Z., Cheng, K., Li, X., Chen, F., Yuan, D., Zhang, F., Run-Yu, A., Zeng, X., Zhao, Y., et al. (2025) · Journal of the American Chemical Society · doi:10.1021/jacs.4c17054 · Cited by 25 · see citing works
Cassidy, K. B., & Zhao, H. (2021) · Biochemistry · doi:10.1021/acs.biochem.1c00330 · Cited by 25 · see citing works
Chen, S., Wang, W., Chen, Z., Li, R., Wu, Z., Dong, G., & Sheng, C. (2024) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.4c01449 · Cited by 24 · see citing works
Lin, J., Wu, Y., Liang, X., Tang, M., Sun, X., Lu, S., Jin, J., Guo, X., Wang, B., Chen, H., et al. (2025) · Advanced Science · doi:10.1002/advs.202500311 · Cited by 23 · see citing works
Yang, J., & Zhu, H. (2025) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.5c01019 · Cited by 23 · see citing works
Efficient amyloid-β degradation in Alzheimer’s disease using SPYTACs
Teng, F., Liu, J., Cui, T., Tan, X., Liu, K., Hou, Z., (54356), L. Z., Xie, Y., Li, R., Li, D., et al. (2026) · Cell · doi:10.1016/j.cell.2026.01.034 · Cited by 24 · see citing works
Zhou, Y., Liao, Y., Zhao, Y., & Tang, W. (2024) · ChemMedChem · doi:10.1002/cmdc.202300643 · Cited by 22 · see citing works
Discovery of Novel HDAC3 Inhibitors with PD-L1 Downregulating/Degrading and Antitumor Immune Effects
Sun, Z., Xu, C., Cheng, J., Yang, Z., Liu, T., Deng, B., Zhang, X., Peng, X., & Chen, J. (2024) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.4c01062 · Cited by 21 · see citing works
Multivalent RGD Peptide-Mediated Nanochimera for Lysosomal Degradation of PDL1 Protein
Song, Y., Cui, L., Liu, Z., Tang, Z., & Chen, X. (2025) · Nano Letters · doi:10.1021/acs.nanolett.5c00341 · Cited by 21 · see citing works
Induced proximity at the cell surface
Till, N. A., Ramanathan, M., & Bertozzi, C. R. (2025) · Nature Biotechnology · doi:10.1038/s41587-025-02592-1 · Cited by 21 · see citing works
Wolska, A., & Smolewski, P. (2022) · Cancers · doi:10.3390/cancers14153778 · Cited by 21 · see citing works
Targeted protein degradation using the lysosomal pathway
Ghosh, S., Ramadas, B., & Manna, D. (2022) · RSC Medicinal Chemistry · doi:10.1039/d2md00273f · Cited by 21 · see citing works
- Authors
- Caianiello, D. F., Zhang, M., Ray, J. D., Howell, R. A., Swartzel, J. C., Branham, E. M. J., Chirkin, E., Sabbasani, V. R., Gong, A. Z., McDonald, D. M., Muthusamy, V., & Spiegel, D. A.
- Affiliations
- Yale University (US)
- Corresponding author
- Spiegel, David A.
- ORCID
- Venue
- Nature Chemical Biology
- Published
- 2021-08-19
- Volume
- 17
- Issue
- 9
- Pages
- 947-953
- ISSN
- 1552-4450 (ISSN-L)
- 1552-4469
- OpenAlex
- W3195114088
- Cited by
- 244
- References
- 53
- Citations by year
- 2026: 49 · 2025: 62 · 2024: 51 · 2023: 47 · 2022: 28 · 2021: 7
- FWCI
- 10.51
- Type
- journal article
- Language
- en
- Open access
- green
- doi.org
- Licence
- Locations
- Nature Chemical Biology (publishedVersion)
- ChemRxiv (acceptedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- Royal College of Surgeons in Ireland (submittedVersion)
- Funders
- U.S. Department of Defense (BC120554)
- Yale University
- National Institute of General Medical Sciences (T32GM067543)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Degradation and Inhibitors
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Chemical Synthesis and Analysis
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Interference and Gene Delivery
- Keywords
- targeted protein degradation, extracellular proteins, asialoglycoprotein receptor, bifunctional small molecules, lysosomal degradation, endocytosis, antibody depletion, inflammatory cytokines, hepatocytes
- MeSH terms
- Animals, Dinitrophenols, Humans, Male, Mice, Inbred C57BL, Molecular Structure, Asialoglycoprotein Receptor, Mice, Small Molecule Libraries, Hep G2 Cells
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