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A case report of clonal EBV-like memory CD4+ T cell activation in fatal checkpoint inhibitor-induced encephalitis
Open accessAbstract
Checkpoint inhibitors produce durable responses in numerous metastatic cancers, but immune-related adverse events (irAEs) complicate and limit their benefit. IrAEs can affect organ systems idiosyncratically; presentations range from mild and self-limited to fulminant and fatal. The molecular mechanisms underlying irAEs are poorly understood. Here, we report a fatal case of encephalitis arising during anti-programmed cell death receptor 1 therapy in a patient with metastatic melanoma. Histologic analyses revealed robust T cell infiltration and prominent programmed death ligand 1 expression. We identified 209 reported cases in global pharmacovigilance databases (across multiple cancer types) of encephalitis associated with checkpoint inhibitor regimens, with a 19% fatality rate. We performed further analyses from the index case and two additional cases to shed light on this recurrent and fulminant irAE. Spatial and multi-omic analyses pinpointed activated memory CD4+ T cells as highly enriched in the inflamed, affected region. We identified a highly oligoclonal T cell receptor repertoire, which we localized to activated memory cytotoxic (CD45RO+GZMB+Ki67+) CD4 cells. We also identified Epstein-Barr virus-specific T cell receptors and EBV+ lymphocytes in the affected region, which we speculate contributed to neural inflammation in the index case. Collectively, the three cases studied here identify CD4+ and CD8+ T cells as culprits of checkpoint inhibitor-associated immune encephalitis.
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“CTLA-4 blockade (alone or in combination with anti-PD-1/PD-L1) produces toxicities in a dose-dependent fashion.22,23”
From Endocrine toxicities of immune checkpoint inhibitors (2021) · cites this paper as [23]
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STAR: ultrafast universal RNA-seq aligner
Dobin, A., Davis, C. A., Schlesinger, F., Drenkow, J., Zaleski, C., Jha, S., Batut, P., Chaisson, M., & Gingeras, T. R. (2013) · Bioinformatics · doi:10.1093/bioinformatics/bts635 · Cited by 51,709
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
Li, B., & Dewey, C. N. (2011) · BMC Bioinformatics · doi:10.1186/1471-2105-12-323 · Cited by 22,179
Robust enumeration of cell subsets from tissue expression profiles
Newman, A. M., Liu, C. L., Green, M. R., Gentles, A. J., Feng, W., Xu, Y., Hoang, C. D., Diehn, M., & Alizadeh, A. A. (2015) · Nature Methods · doi:10.1038/nmeth.3337 · Cited by 13,224
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Tumeh, P. C., Harview, C. L., Yearley, J. H., Shintaku, I. P., Taylor, E. J. M., Robert, L., Chmielowski, B., Spasic, M., Henry, G., Ciobanu, V., et al. (2014) · Nature · doi:10.1038/nature13954 · Cited by 6,609
Immune-Related Adverse Events Associated with Immune Checkpoint Blockade
Postow, M. A., Sidlow, R., & Hellmann, M. D. (2018) · New England Journal of Medicine · doi:10.1056/nejmra1703481 · Cited by 4,849
RSeQC: quality control of RNA-seq experiments
Wang, L., Wang, S., & Li, W. (2012) · Bioinformatics · doi:10.1093/bioinformatics/bts356 · Cited by 2,753
Wang, D. Y., Salem, J.-E., Cohen, J. V., Chandra, S., Menzer, C., Ye, F., Zhao, S., Das, S., Beckermann, K. E., Ha, L., et al. (2018) · JAMA Oncology · doi:10.1001/jamaoncol.2018.3923 · Cited by 2,674
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Johnson, D. B., Balko, J. M., Compton, M. L., Chalkias, S., Gorham, J., Xu, Y., Hicks, M., Puzanov, I., Alexander, M. R., Bloomer, T. L., et al. (2016) · New England Journal of Medicine · doi:10.1056/nejmoa1609214 · Cited by 2,308
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Metadata
- Authors
- Johnson, D. B., McDonnell, W. J., Gonzalez-Ericsson, P. I., Al-Rohil, R. N., Mobley, B. C., Salem, J.-E., Wang, D. Y., Sanchez, V., Wang, Y., Chastain, C. A., Barker, K., Liang, Y., Warren, S., Beechem, J. M., Menzies, A. M., Tio, M., Long, G. V., Cohen, J. V., Guidon, A. C., O’Hare, M., Chandra, S., Chowdhary, A., Lebrun-Vignes, B., Goldinger, S. M., Rushing, E. J., Buchbinder, E. I., Mallal, S. A., Shi, C., Xu, Y., Moslehi, J. J., Sanders, M. E., Sosman, J. A., & Balko, J. M.
- Affiliations
- Vanderbilt University (US)
- Duke Medical Center (US)
- Vanderbilt University Medical Center (US)
- Inserm (FR)
- Nanostring Technologies (United States) (US)
- The University of Sydney (AU)
- Melanoma Institute Australia (AU)
- Massachusetts General Hospital (US)
- Northwestern University (US)
- University Hospital Zurich (CH)
- Dana-Farber Cancer Institute (US)
- Corresponding author
- Johnson, Douglas B.
- Balko, Justin M.
- ORCID
- Johnson, Douglas B.
- McDonnell, Wyatt J.
- Gonzalez-Ericsson, Paula I.
- Al-Rohil, Rami N.
- Mobley, Bret C.
- Salem, Joe-Elie
- Wang, Daniel Y.
- Sanchez, Violeta
- Wang, Yu
- Chastain, Cody A.
- Liang, Yan
- Warren, Sarah
- Beechem, Joseph M.
- Menzies, Alexander M.
- Tio, Martin
- Long, Georgina V.
- Cohen, Justine V.
- Guidon, Amanda C.
- O’Hare, Méabh
- Chandra, Sunandana
- Goldinger, Simone M.
- Rushing, Elisabeth J.
- Buchbinder, Elizabeth I.
- Mallal, Simon A.
- Shi, Chanjuan
- Xu, Yaomin
- Moslehi, Javid J.
- Sanders, Melinda E.
- Sosman, Jeffrey A.
- Balko, Justin M.
- Venue
- Nature Medicine
- Published
- 2019-07-22
- Volume
- 25
- Issue
- 8
- Pages
- 1243-1250
- ISSN
- 1078-8956 (ISSN-L)
- 1546-170X
- PMC
- PMC6689251
- OpenAlex
- W2964133630
- Cited by
- 176
- References
- 46
- Citations by year
- 2026: 14 · 2025: 13 · 2024: 19 · 2023: 24 · 2022: 32 · 2021: 34 · 2020: 39 · 2019: 1
- FWCI
- 11.16
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Nature Medicine (publishedVersion)
- PubMed (publishedVersion)
- Zurich Open Repository and Archive (University of Zurich) (acceptedVersion)
- PubMed Central (acceptedVersion)
- HAL (submittedVersion)
- Zurich Open Repository and Archive (University of Zurich) (submittedVersion)
- Zurich Open Repository and Archive (University of Zurich)
- Funders
- National Heart, Lung, and Blood Institute (T32HL069765, R01HL141466, K12HL143956, R01HL155990)
- National Cancer Institute (K23CA204726, R00CA181491, R01CA227481, K12CA090625, P30CA068485, P30CA014236)
- National Institute of Allergy and Infectious Diseases (P30AI110527)
- National Institute of Diabetes and Digestive and Kidney Diseases (R56DK108352, U24DK059637, R01DK112262)
- Topics
- Health Sciences › Medicine › Oncology › Cancer Immunotherapy and Biomarkers
- Health Sciences › Medicine › Clinical Neurology › Autoimmune Neurological Disorders and Treatments
- Life Sciences › Immunology and Microbiology › Immunology › T-cell and B-cell Immunology
- Keywords
- anti-PD-1 therapy, immune-related adverse events, Epstein-Barr virus, memory CD4+ T cells, cytotoxic CD4+ T cells, PD-L1, metastatic melanoma, neuroinflammation, pharmacovigilance
- MeSH terms
- Adolescent, Adult, Aged, Aged, 80 and over, Encephalitis, Herpesvirus 4, Human, Female, Humans, Immunologic Memory, Lymphocyte Activation, Male, Middle Aged, CD4-Positive T-Lymphocytes, Young Adult, Programmed Cell Death 1 Receptor
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