Cited by 12,116

Robust enumeration of cell subsets from tissue expression profiles

Newman, Aaron M, Liu, Chih Long, Green, Michael R, Gentles, Andrew J, Feng, Weiguo, Xu, Yue, Hoang, Chuong D, Diehn, Maximilian +1 more·2015·Nature Methods

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1038/nmeth.3337

Cites

1 of 1 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • The major contributors to plasma miRNA are RBCs and platelets (38%).

    “We deconvoluted 85 plasma samples from 30 representative cell types using CIBERSORT [21] and determined the major contributors to plasma miRNA are RBCs and platelets (38%) (Fig. 5E, F).”

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Flagged first, then by citations

Research works printed but not linked: 28

  1. [1]Hanahan D Weinberg RA Cell 144 646 674 2011 21376230
  2. [2]Coussens LM Zitvogel L Palucka AK Science 339 286 291 2013 23329041 PMC3591506
  3. [3]Shen-Orr SS Gaujoux R Curr Opin Immunol 25 571 578 2013 24148234 PMC3874291
  4. [4]Abbas AR Wolslegel K Seshasayee D Modrusan Z Clark HF PLoS One 4 e6098 2009 19568420 PMC2699551
  5. [5]Gong T PLoS One 6 e27156 2011 22110609 PMC3217948
  6. [6]Qiao W PLoS Comput Biol 8 e1002838 2012 23284283 PMC3527275
  7. [7]Liebner DA Huang K Parvin JD Bioinformatics 30 682 689 2014 24085566 PMC3933869
  8. [8]Zhong Y Wan YW Pang K Chow L Liu Z BMC Bioinformatics 14 89 2013 23497278 PMC3626856
  9. [9]Zuckerman NS Noam Y Goldsmith AJ Lee PP PLoS Comput Biol 9 e1003189 2013 23990767 PMC3749952
  10. [10]Schölkopf B Smola AJ Williamson RC Bartlett PL Neural Comput 12 1207 1245 2000 10905814
  11. [11]Lukk M Nat Biotechnol 28 322 324 2010 20379172 PMC2974261
  12. [12]Shen-Orr SS Nat Methods 7 287 289 2010 20208531 PMC3699332
  13. [13]Kuhn A Thu D Waldvogel HJ Faull RLM Luthi-Carter R Nat Methods 8 945 947 2011 21983921
  14. [14]Yoshihara K Nat Commun 4 2612 2013 24113773 PMC3826632
  15. [16]Burington B Sci Transl Med 3 74ra22 2011 21411738
  16. [17]Gong T Szustakowski JD Bioinformatics 29 1083 1085 2013 23428642
  17. [18]Levy R J Clin Oncol 32 1797 1803 2014 24799467 PMC4039868
  18. [19]Lu P Nakorchevskiy A Marcotte EM Proc Natl Acad Sci USA 100 10370 10375 2003 12934019 PMC193568
  19. [20]Zhong Y Liu Z Nat Methods 9 8 9 2012 22205510
  20. [22]Cherkassky V Ma Y Neural Netw 17 113 126 2004 14690712
  21. [24]Hastie T Tibshirani R Friedman J The Elements of Statistical Learning 2 Springer-Verlag 2009
  22. [26]Drucker H Burges CJC Kaufman L Smola A Vapnik V Support Vector Regression Machines 9 MIT Press 1997
  23. [27]Su LJ BMC Genomics 8 140 2007 17540040 PMC1894975
  24. [28]Landi MT PLoS One 3 e1651 2008 18297132 PMC2249927
  25. [29]Storey JD Tibshirani R Proc Natl Acad Sci USA 100 9440 9445 2003 12883005 PMC170937
  26. [30]Benita Y Blood 115 5376 5384 2010 20410506 PMC2902135
  27. [31]Watkins NA Blood 113 e1 9 2009 19228925 PMC2680378
  28. [32]Abbas AR Genes Immun 6 319 331 2005 15789058

Cited by

Sorted by citations

Authors
Newman, A. M., Liu, C. L., Green, M. R., Gentles, A. J., Feng, W., Xu, Y., Hoang, C. D., Diehn, M., & Alizadeh, A. A.
Venue
Nature Methods
Published
2015-03-30
Volume
12
Issue
5
Pages
453-457
ISSN
  • 1548-7091
  • 1548-7105
Cited by
12,116
References
1
Language
en

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review