ALS-implicated protein TDP-43 sustains levels of STMN2, a mediator of motor neuron growth and repair
Open accessAbstract
The findings that amyotrophic lateral sclerosis (ALS) patients almost universally display pathological mislocalization of the RNA-binding protein TDP-43 and that mutations in its gene cause familial ALS have nominated altered RNA metabolism as a disease mechanism. However, the RNAs regulated by TDP-43 in motor neurons and their connection to neuropathy remain to be identified. Here we report transcripts whose abundances in human motor neurons are sensitive to TDP-43 depletion. Notably, expression of STMN2, which encodes a microtubule regulator, declined after TDP-43 knockdown and TDP-43 mislocalization as well as in patient-specific motor neurons and postmortem patient spinal cord. STMN2 loss upon reduced TDP-43 function was due to altered splicing, which is functionally important, as we show STMN2 is necessary for normal axonal outgrowth and regeneration. Notably, post-translational stabilization of STMN2 rescued neurite outgrowth and axon regeneration deficits induced by TDP-43 depletion. We propose that restoring STMN2 expression warrants examination as a therapeutic strategy for ALS.
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Pathological TDP-43 aggregation and premature polyadenylation and loss of stathmin-2 are pathologies commonly observed across sALS and fALS.
“alternative approaches that mitigate pathologies commonly observed across sALS and fALS, such as pathological TDP-43 aggregation (39) or premature polyadenylation and loss of stathmin-2, a key regulator of microtubule dynamics in motor neurons (55, 56), are highly desirable.”
From Reduction of nemo-like kinase increases lysosome biogenesis and ameliorates TDP-43–related neurodegeneration (2023) · cites this paper as [56]
The Results sections on postmortem ALS spinal cord and mutant TDP-43 motor neurons report reduced STMN2 in sporadic cases and in patient-derived motor neurons. The paper links STMN2 loss to cryptic-exon splicing, but the passages do not establish premature polyadenylation. Its Discussion also notes that FUS-mutant patients do not display TDP-43 pathology, so the claim's broad framing across sporadic and familial ALS needs qualification. TDP-43 aggregation is separately cited to reference 39 in the citing sentence. (LLM, conf=0.87)
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Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
Benjamini, Y., & Hochberg, Y. (1995) · Journal of the Royal Statistical Society Series B: Statistical Methodology · doi:10.1111/j.2517-6161.1995.tb02031.x · Cited by 109,482 · see citing works
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Love, M. I., Huber, W., & Anders, S. (2014) · Genome Biology · doi:10.1186/s13059-014-0550-8 · Cited by 95,106 · see citing works
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
Edgar, R. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.1.207 · Cited by 13,288 · see citing works
Converging Mechanisms in ALS and FTD: Disrupted RNA and Protein Homeostasis
Ling, S.-C., Polymenidou, M., & Cleveland, D. W. (2013) · Neuron · doi:10.1016/j.neuron.2013.07.033 · Cited by 1,811 · see citing works
Long pre-mRNA depletion and RNA missplicing contribute to neuronal vulnerability from loss of TDP-43
Polymenidou, M., Lagier-Tourenne, C., Hutt, K. R., Huelga, S. C., Moran, J., Liang, T. Y., Ling, S.-C., Sun, E., Wancewicz, E., Mazur, C., et al. (2011) · Nature Neuroscience · doi:10.1038/nn.2779 · Cited by 1,335 · see citing works
Loss of murine TDP-43 disrupts motor function and plays an essential role in embryogenesis
Kraemer, B. C., Schuck, T., Wheeler, J. M., Robinson, L. C., Trojanowski, J. Q., Lee, V. M. Y., & Schellenberg, G. D. (2010) · Acta Neuropathologica · doi:10.1007/s00401-010-0659-0 · Cited by 350 · see citing works
Bilican, B., Serio, A., Barmada, S. J., Nishimura, A. L., Sullivan, G. J., Carrasco, M., Phatnani, H. P., Puddifoot, C. A., Story, D., Fletcher, J., et al. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1202922109 · Cited by 328 · see citing works
Constructing and Deconstructing Stem Cell Models of Neurological Disease
Han, S. S. W., Williams, L. A., & Eggan, K. C. (2011) · Neuron · doi:10.1016/j.neuron.2011.05.003 · Cited by 159 · see citing works
Self-citationCytoplasmic accumulation and aggregation of TDP-43 upon proteasome inhibition in cultured neurons.
van Eersel, J., Ke, Y. D., Gladbach, A., Bi, M., Götz, J., Kril, J. J., & Ittner, L. M. (2011) · PLoS ONE · doi:10.1371/journal.pone.0022850 · Cited by 130 · see citing works
Flagged first, then by citations
Research works printed but not linked: 51
- [1]Taylor JP, Brown RH & Cleveland DW Decoding ALS: from genes to mechanism. 539, 197– 206 (2016). PMC5585017 27830784
- [2]Ravits J Deciphering amyotrophic lateral sclerosis: What phenotype, neuropathology and genetics are telling us about pathogenesis. Amyotroph Lateral Scler Frontotemporal Degener 14, 5– 18 (2013). 23678876 PMC3779649
- [5]Neumann M Ubiquitinated TDP-43 in frontotemporal lobar degeneration and amyotrophic lateral sclerosis. Science 314, 130– 133 (2006). 17023659
- [6]Alami NH Axonal transport of TDP-43 mRNA granules is impaired by ALS-causing mutations. Neuron 81, 536– 543 (2014). 24507191 PMC3939050
- [7]Lee EB, Lee VM-Y & Trojanowski JQ Gains or losses: molecular mechanisms of TDP43-mediated neurodegeneration. 13, 38– 50 (2012). PMC3285250 22127299
- [8]Sreedharan J TDP-43 mutations in familial and sporadic amyotrophic lateral sclerosis. Science 319, 1668– 1672 (2008). 18309045 PMC7116650
- [11]Tollervey JR Characterizing the RNA targets and position-dependent splicing regulation by TDP-43. Nat Neurosci 14, 452– 458 (2011). 21358640 PMC3108889
- [12]Di Giorgio FP, Boulting GL, Bobrowicz S & Eggan KC Human Embryonic Stem Cell-Derived Motor Neurons Are Sensitive to the Toxic Effect of Glial Cells Carrying an ALS-Causing Mutation. Stem Cell 3, 637– 648 (2008). 19041780
- [13]Davis-Dusenbery BN, Williams LA, Klim JR & Eggan K How to make spinal motor neurons. Development 141, 491– 501 (2014). 24449832
- [16]Shiga A Alteration of POLDIP3 Splicing Associated with Loss of Function of TDP-43 in Tissues Affected with ALS. PLoS ONE 7, (2012). PMC3416794 22900096
- [17]Yang C Partial loss of TDP-43 function causes phenotypes of amyotrophic lateral sclerosis. Proc. Natl. Acad. Sci. U.S.A 111, E1121– 9 (2014). 24616503 PMC3970502
- [18]Grenningloh G, Soehrman S, Bondallaz P, Ruchti E & Cadas H Role of the microtubule destabilizing proteins SCG10 and stathmin in neuronal growth. J. Neurobiol 58, 60– 69 (2004). 14598370
- [19]Shin JE, Geisler S & DiAntonio A Dynamic regulation of SCG10 in regenerating axons after injury. Exp Neurol 252, 1– 11 (2014). 24246279 PMC3947015
- [20]Kasashima K, Sakashita E, Saito K & Sakamoto H Complex formation of the neuron-specific ELAV-like hu RNA-binding proteins. Nucleic Acids Res 30, 4519– 4526 (2002). 12384599 PMC137131
- [21]Martin KR Over-expression of RCAN1 causes Down syndrome-like hippocampal deficits that alter learning and memory. Human Molecular Genetics 21, 3025– 3041 (2012). 22511596
- [22]Ariyannur PS Methamphetamine-induced neuronal protein NAT8L is the NAA biosynthetic enzyme: implications for specialized acetyl coenzyme A metabolism in the CNS. Brain Research 1335, 1– 13 (2010). 20385109
- [23]Boulting GL A functionally characterized test set of human induced pluripotent stem cells. Nat Biotechnol 29, 279– 286 (2011). 21293464 PMC3229307
- [24]Egawa N Drug Screening for ALS Using Patient-Specific Induced Pluripotent Stem Cells. Sci Transl Med 4, 145ra104– 145ra104 (2012). 22855461
- [25]Serio A Astrocyte pathology and the absence of non-cell autonomy in an induced pluripotent stem cell model of TDP-43 proteinopathy. Proc. Natl. Acad. Sci. U.S.A 110, 4697– 4702 (2013). 23401527 PMC3607024
- [27]Zhang Z Downregulation of MicroRNA-9 in iPSC-Derived Neurons of FTD/ALS Patients with TDP-43 Mutations. PLoS ONE 8, e76055 (2013). 24143176 PMC3797144
- [28]Park Y-Y TARDBP regulates glycolysis in hepatocellular carcinoma by regulating PFKP through miR-520. Hepatology (Baltimore, Md.) 58, 182– 191 (2013). PMC3923572 23389994
- [29]Colombrita C From transcriptomic to protein level changes in TDP-43 and FUS loss-of-function cell models. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1849, 1398– 1410 (2015). 26514432
- [30]Chauvin S & Sobel A Neuronal stathmins: A family of phosphoproteins cooperating for neuronal development, plasticity and regeneration. Progress in Neurobiology 126, 1– 18 (2015). 25449700
- [31]Bieche I Expression of stathmin family genes in human tissues: non-neural-restricted expression for SCLIP. Genomics 81, 400– 410 (2003). 12676564
- [32]Smith BN Exome-wide rare variant analysis identifies TUBA4A mutations associated with familial ALS. Neuron 84, 324– 331 (2014). 25374358 PMC4521390
- [33]Wu C-H Mutations in the profilin 1 gene cause familial amyotrophic lateral sclerosis. Nature 488, 499– 503 (2012). 22801503 PMC3575525
- [34]Nicolas A Genome-wide Analyses Identify KIF5A as a Novel ALS Gene. Neuron 97, 1268– 1283.e6 (2018). 29566793 PMC5867896
- [35]Ling JP, Pletnikova O, Troncoso JC & Wong PC TDP-43 repression of nonconserved cryptic exons is compromised in ALS-FTD. Science 349, 650– 655 (2015). 26250685 PMC4825810
- [36]Humphrey J, Emmett W, Fratta P, Isaacs AM & Plagnol V Quantitative analysis of cryptic splicing associated with TDP-43 depletion. BMC Med Genomics 10, 38 (2017). 28549443 PMC5446763
- [37]White MA TDP-43 gains function due to perturbed autoregulation in a Tardbp knock-in mouse model of ALS-FTD. Nat Neurosci 1– 20 (2018). doi: 10.1038/s41593-018-0113-5 PMC5884423 29556029 · DOI
- [38]Rabin SJ Sporadic ALS has compartment-specific aberrant exon splicing and altered cell–matrix adhesion biology. Human Molecular Genetics 19, 313– 328 (2009). 19864493 PMC2796893
- [39]Highley JR Loss of nuclear TDP‐43 in amyotrophic lateral sclerosis (ALS) causes altered expression of splicing machinery and widespread dysregulation of RNA splicing in motor neurones. Neuropathology and Applied Neurobiology 40, 670– 685 (2014). 24750229
- [40]D’Erchia AM Massive transcriptome sequencing of human spinal cord tissues provides new insights into motor neuron degeneration in ALS. Sci Rep 7, 10046 (2017). 28855684 PMC5577269
- [41]Tararuk T JNK1 phosphorylation of SCG10 determines microtubule dynamics and axodendritic length. J Cell Biol 173, 265– 277 (2006). 16618812 PMC2063817
- [42]Shin JE SCG10 is a JNK target in the axonal degeneration pathway. P Natl Acad Sci Usa 109, E3696– E3705 (2012). PMC3535671 23188802
- [43]Kaplan A Neuronal Matrix Metalloproteinase-9 Is a Determinant of Selective Neurodegeneration. Neuron 81, 333– 348 (2014). 24462097 PMC6015650
- [44]Kiskinis E Pathways disrupted in human ALS motor neurons identified through genetic correction of mutant SOD1. Cell Stem Cell 14, 781– 795 (2014). 24704492 PMC4653065
- [45]Fratta Pietro Mice with endogenous TDP‐43 mutations exhibit gain of splicing function and characteristics of amyotrophic lateral sclerosis. EMBO J 37, e98684 (2018). 29764981 PMC5983119
- [46]de Boer AS Genetic validation of a therapeutic target in a mouse model of ALS. Sci Transl Med 6, 248ra104– 248ra104 (2014). 25100738
- [47]Bellouze S Stathmin 1/2-triggered microtubule loss mediates Golgi fragmentation in mutant SOD1 motor neurons. Mol Neurodegeneration 11, 43 (2016). PMC4899909 27277231
- [48]Amoroso MW Accelerated high-yield generation of limb-innervating motor neurons from human stem cells. J Neurosci 33, 574– 586 (2013). 23303937 PMC3711539
- [49]Yuan SH Cell-surface marker signatures for the isolation of neural stem cells, glia and neurons derived from human pluripotent stem cells. PLoS ONE 6, e17540 (2011). 21407814 PMC3047583
- [50]Steinbaugh MJ bcbioRNASeq: R package for bcbio RNA-seq analysis. F1000Research 6, 1976 (2017).
- [52]Anders S, Reyes A & Huber W Detecting differential usage of exons from RNA-seq data. Genome Research 22, 2008– 2017 (2012). 22722343 PMC3460195
- [53]Patro R, Duggal G, Love MI, Irizarry RA & Kingsford C Salmon provides fast and bias-aware quantification of transcript expression. Nat Methods 14, 417– 419 (2017). 28263959 PMC5600148
- [54]Soneson C, Love MI & Robinson MD Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences. F1000Research 4, 1521 (2016). PMC4712774 26925227
- [56]Son EY Conversion of mouse and human fibroblasts into functional spinal motor neurons. Cell Stem Cell 9, 205– 218 (2011). 21852222 PMC3188987
- [57]Labun K, Montague TG, Gagnon JA, Thyme SB & Valen E CHOPCHOP v2: a web tool for the next generation of CRISPR genome engineering. Nucleic Acids Res 44, W272– W276 (2016). 27185894 PMC4987937
- [58]Meijering E Design and validation of a tool for neurite tracing and analysis in fluorescence microscopy images. Cytometry Part A 58A, 167– 176 (2004). 15057970
- [59]Ferreira TA Neuronal morphometry directly from bitmap images. Nat Methods 11, 982– 984 (2014). 25264773 PMC5271921
- [60]Taylor AM A microfluidic culture platform for CNS axonal injury, regeneration and transport. Nat Methods 2, 599– 605 (2005). 16094385 PMC1558906
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“An ASO-based correction of the STMN2 premature termination defect downstream of TDP-43 [47, 48] could be one example, and such trials are in progress.”
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- Authors
- Klim, J. R., Williams, L. A., Limone, F., Guerra San Juan, I., Davis-Dusenbery, B. N., Mordes, D. A., Burberry, A., Steinbaugh, M. J., Gamage, K. K., Kirchner, R., Moccia, R., Cassel, S. H., Chen, K., Wainger, B. J., Woolf, C. J., & Eggan, K.
- Affiliations
- Broad Institute (US)
- Harvard University (US)
- Boston Children's Hospital (US)
- Corresponding author
- Eggan, Kevin
- ORCID
- Venue
- Nature Neuroscience
- Published
- 2019-01-14
- Volume
- 22
- Issue
- 2
- Pages
- 167-179
- ISSN
- 1097-6256 (ISSN-L)
- 1546-1726
- PMC
- PMC7153761
- OpenAlex
- W2907108807
- Cited by
- 653
- References
- 9
- Citations by year
- 2026: 92 · 2025: 132 · 2024: 121 · 2023: 83 · 2022: 77 · 2021: 75 · 2020: 50 · 2019: 23
- FWCI
- 38.07
- Type
- journal article
- Language
- en
- Open access
- green
- research.vu.nl
- Licence
- other-oa
- www.springer.com/tdm (tdm)
- Locations
- Nature Neuroscience (publishedVersion)
- PubMed (publishedVersion)
- VU Research Portal (publishedVersion, other-oa)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Digital Access to Scholarship at Harvard (DASH) (Harvard University) (submittedVersion, cc-by)
- Data Archiving and Networked Services (DANS) (submittedVersion, other-oa)
- Funders
- Howard Hughes Medical Institute (NIH5R01NS089742)
- Target ALS
- National Institutes of Health (NIH5R01NS089742)
- Harvard Stem Cell Institute
- National Institute on Aging (R00AG057808, K99AG057808)
- National Cancer Institute (T32CA009216)
- National Institute of General Medical Sciences (T32GM007753)
- National Institute of Neurological Disorders and Stroke (R01NS089742)
- Topics
- Health Sciences › Medicine › Neurology › Amyotrophic Lateral Sclerosis Research
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Hereditary Neurological Disorders
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Muscle Physiology and Disorders
- Keywords
- amyotrophic lateral sclerosis, TDP-43, STMN2, motor neurons, RNA splicing, microtubule regulation, axon growth, axon regeneration, protein stabilization, RNA metabolism, TDP-43 mislocalization, pluripotent stem cells
- MeSH terms
- Amyotrophic Lateral Sclerosis, Axons, Cell Line, DNA-Binding Proteins, Female, Humans, Male, Membrane Proteins, Motor Neurons, Spinal Cord, Down-Regulation, Stathmin, Induced Pluripotent Stem Cells
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