Seasonal and annual changes in the microbial communities of Ofunato Bay, Japan, based on metagenomics
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Five years of datasets from 2015 to 2019 of whole genome shotgun sequencing for cells trapped on 0.2-µm filters of seawater collected monthly from Ofunato Bay, an enclosed bay in Japan, were analysed, which included the 2015 data that we had reported previously. Nucleotide sequences were determined for extracted DNA from three locations for both the upper (1 m) and deeper (8 or 10 m) depths. The biotic communities analysed at the domain level comprised bacteria, eukaryotes, archaea and viruses. The relative abundance of bacteria was over 60% in most months for the five years. The relative abundance of the SAR86 cluster was highest in the bacterial group, followed by Candidatus Pelagibacter and Planktomarina. The relative abundance of Ca. Pelagibacter showed no relationship with environmental factors, and those of SAR86 and Planktomarina showed positive correlations with salinity and dissolved oxygen, respectively. The bacterial community diversity showed seasonal changes, with high diversity around September and low diversity around January for all five years. Nonmetric multidimensional scaling analysis also revealed that the bacterial communities in the bay were grouped in a season-dependent manner and linked with environmental variables such as seawater temperature, salinity and dissolved oxygen.
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Similar conclusions about seasonal variation were drawn from a 5-year study focusing on bacterial genera associated with seawater from the Ofunato Bay in Japan.
“Similar conclusions were drawn from a 5-year study focusing on the bacterial genera associated with seawater from the Ofunato Bay in Japan (Kobiyama et al., 2021).”
From The Active Microbiota of the Eggs and the Nauplii of the Pacific Blue Shrimp Litopenaeus stylirostris Partially Shaped by a Potential Vertical Transmission (2022) · cites this paper as Kobiyama et al., 2021
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- Authors
- Kobiyama, A., Rashid, J., Reza, M. S., Ikeda, Y., Yamada, Y., Kudo, T., Mizusawa, N., Yanagisawa, S., Ikeda, D., Sato, S., Ogata, T., Ikeo, K., Kaga, S., Watanabe, S., Naiki, K., Kaga, Y., Segawa, S., Tada, Y., Musashi, T., Mineta, K., Gojobori, T., & Watabe, S.
- Affiliations
- Kitasato University (JP)
- Bangladesh Fisheries Research Institute (BD)
- Bangladesh Agricultural University (BD)
- National Institute of Genetics (JP)
- Iwate Fisheries Technology Center (JP)
- Iwate Prefectural Inland Fisheries Technology Center (JP)
- King Abdullah University of Science and Technology (SA)
- Corresponding author
- Gojobori, Takashi
- Watabe, Shugo
- ORCID
- Venue
- Scientific Reports
- Published
- 2021-08-26
- Volume
- 11
- Issue
- 1
- Pages
- 17277-17277
- ISSN
- 2045-2322 (ISSN-L)
- PMC
- PMC8390468
- OpenAlex
- W3195959347
- Cited by
- 11
- References
- 77
- Citations by year
- 2026: 2 · 2025: 2 · 2024: 2 · 2023: 4 · 2022: 1
- FWCI
- 0.95
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- Scientific Reports (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- HAL (submittedVersion, cc-by)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology) (submittedVersion, cc-by)
- Greater South Information System
- Funders
- King Abdullah University of Science and Technology (URF/1/1976-03-01, URF/1/1976-17-01, URF/1/1976-20-01)
- Topics
- Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
- Physical Sciences › Earth and Planetary Sciences › Oceanography › Marine Biology and Ecology Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Keywords
- microbial communities, seasonal variation, enclosed bay, bacterial diversity, SAR86, eukaryotes, archaea, viruses, salinity, dissolved oxygen, seawater temperature, metagenomics, whole genome shotgun sequencing
- MeSH terms
- Whole Genome Sequencing, Cyanobacteria, Bacteria, Geography, Japan, Oxygen, Population Dynamics, Seasons, Seawater, Temperature, Ecosystem, Salinity, Metagenomics, Bays, Microbiota
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