SAR11 clade dominates ocean surface bacterioplankton communities
Abstract
The most abundant class of bacterial ribosomal RNA genes detected in seawater DNA by gene cloning belongs to SAR11-an alpha-proteobacterial clade. Other than indications of their prevalence in seawater, little is known about these organisms. Here we report quantitative measurements of the cellular abundance of the SAR11 clade in northwestern Sargasso Sea waters to 3,000 m and in Oregon coastal surface waters. On average, the SAR11 clade accounts for a third of the cells present in surface waters and nearly a fifth of the cells present in the mesopelagic zone. In some regions, members of the SAR11 clade represent as much as 50% of the total surface microbial community and 25% of the subeuphotic microbial community. By extrapolation, we estimate that globally there are 2.4 x 10(28) SAR11 cells in the oceans, half of which are located in the euphotic zone. Although the biogeochemical role of the SAR11 clade remains uncertain, these data support the conclusion that this microbial group is among the most successful organisms on Earth.
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The microorganisms that were more represented in the water samples were completely different and belonged to very common marine groups (HIMB11, SAR11, AEGEAN).
“Indeed, the microorganisms that were more represented in the water samples were completely different and belonged to very common marine groups (HIMB11, SAR11, AEGEAN) (Morris et al., 2002; Durham et al., 2014; Cram et al., 2015).”
From Potential lineage transmission within the active microbiota of the eggs and the nauplii of the shrimp <i>Litopenaeus stylirostris</i> : possible influence of the rearing water and more (2021) · cites this paper as Morris et al., 2002
Cites
The use of DAPI for identifying and counting aquatic microflora1
Porter, K. G., & Feig, Y. S. (1980) · Limnology and Oceanography · doi:10.4319/lo.1980.25.5.0943 · Cited by 5,098 · see citing works
Prokaryotes: The unseen majority
Whitman, W. B., Coleman, D. C., & Wiebe, W. J. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.12.6578 · Cited by 4,871 · cited 1× · see citing works
“Using our mean percentages for surface and mesopelagic samples and previous reported value”
ResultAmann, R., Krumholz, L. R., & Stahl, D. A. (1990) · Journal of Bacteriology · doi:10.1128/jb.172.2.762-770.1990 · Cited by 2,207 · see citing works
Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis
von Wintzingerode, F., Göbel, U. B., & Stackebrandt, E. (1997) · FEMS Microbiology Reviews · doi:10.1111/j.1574-6976.1997.tb00351.x · Cited by 2,054 · see citing works
Genetic diversity in Sargasso Sea bacterioplankton
Giovannoni, S. J., Britschgi, T. B., Moyer, C. L., & Field, K. G. (1990) · Nature · doi:10.1038/345060a0 · Cited by 1,654 · see citing works
Self-citationArchaeal dominance in the mesopelagic zone of the Pacific Ocean
Karner, M. B., DeLong, E. F., & Karl, D. M. (2001) · Nature · doi:10.1038/35054051 · Cited by 1,652 · see citing works
Phylogenetic Stains: Ribosomal RNA-Based Probes for the Identification of Single Cells
DeLong, E. F., Wickham, G. S., & Pace, N. R. (1989) · Science · doi:10.1126/science.2466341 · Cited by 1,239 · see citing works
Microbial Ecology of the Oceans
Kirchman, D. L. (2008) · Wiley eBooks · doi:10.1002/9780470281840 · Cited by 1,153 · see citing works
Microbial ecology of the oceans
(2001) · Choice Reviews Online · doi:10.5860/choice.38-5020 · Cited by 1,122 · see citing works
Cultivation of the ubiquitous SAR11 marine bacterioplankton clade
Rappé, M. S., Connon, S. A., Vergin, K. L., & Giovannoni, S. J. (2002) · Nature · doi:10.1038/nature00917 · Cited by 1,020 · see citing works
Self-citationMajor role of bacteria in biogeochemical fluxes in the ocean's interior
Cho, B. C., & Azam, F. (1988) · Nature · doi:10.1038/332441a0 · Cited by 782 · see citing works
Bacterial phylogeny based on comparative sequence analysis (review)
Ludwig, W., Strunk, O., Klugbauer, S., Klugbauer, N., Weizenegger, M., Neumaier, J., Bachleitner, M., & Schleifer, K. H. (1998) · Electrophoresis · doi:10.1002/elps.1150190416 · Cited by 739 · see citing works
Cottrell, M. T., & Kirchman, D. L. (2000) · Applied and Environmental Microbiology · doi:10.1128/aem.66.12.5116-5122.2000 · Cited by 456 · see citing works
Fuchs, B. M., Wallner, G., Beisker, W., Schwippl, I., Ludwig, W., & Amann, R. (1998) · Applied and Environmental Microbiology · doi:10.1128/aem.64.12.4973-4982.1998 · Cited by 394 · see citing works
Dominance of bacterial biomass in the Sargasso Sea and its ecological implications
Fuhrman, J. A., Sleeter, T. D., Carlson, C., & Proctor, L. (1989) · Marine Ecology Progress Series · doi:10.3354/meps057207 · Cited by 362 · see citing works
Self-citationEstimating the Growth Rate of Slowly Growing Marine Bacteria from RNA Content
Kemp, P. F., Lee, S., & LaRoche, J. (1993) · Applied and Environmental Microbiology · doi:10.1128/aem.59.8.2594-2601.1993 · Cited by 338 · see citing works
Hicks, R. E., Amann, R., & Stahl, D. A. (1992) · Applied and Environmental Microbiology · doi:10.1128/aem.58.7.2158-2163.1992 · Cited by 323 · see citing works
An In Situ Hybridization Protocol for Detection and Identification of Planktonic Bacteria
Glöckner, F. O., Amann, R., Alfreider, A., Pernthaler, J., Psenner, R., Trebesius, K., & SCHLEIFER, K. H. (1996) · Systematic and Applied Microbiology · doi:10.1016/s0723-2020(96)80069-5 · Cited by 315 · see citing works
Fuchs, B. M., Glöckner, F. O., Wulf, J., et al. (2000) · Applied and Environmental Microbiology · doi:10.1128/aem.66.8.3603-3607.2000 · Cited by 297 · see citing works
Field, K. G., Gordon, D. A., Wright, T., Rappé, M. S., Urback, E., Vergin, K. L., & Giovannoni, S. J. (1997) · Applied and Environmental Microbiology · doi:10.1128/aem.63.1.63-70.1997 · Cited by 286 · see citing works
Self-citationSchönhuber, W. A., Fuchs, B. M., Juretschko, S., et al. (1997) · Applied and Environmental Microbiology · doi:10.1128/aem.63.8.3268-3273.1997 · Cited by 263 · see citing works
Buck, K., Chavezt, F., & Campbell, L. (1996) · Aquatic Microbial Ecology · doi:10.3354/ame010283 · Cited by 225 · see citing works
Pernthaler, A., Preston, C. M., Pernthaler, J., DeLong, E. F., & Amann, R. (2002) · Applied and Environmental Microbiology · doi:10.1128/aem.68.2.661-667.2002 · Cited by 214 · see citing works
Sieracki, M. E., Johnson, P. W., & Sieburth, J. M. (1985) · Applied and Environmental Microbiology · doi:10.1128/aem.49.4.799-810.1985 · Cited by 196 · see citing works
Lee, S., Malone, C., & Kemp, P. F. (1993) · Marine Ecology Progress Series · doi:10.3354/meps101193 · Cited by 163 · see citing works
Stocks and dynamics of bacterioplankton in the northwestern Sargasso Sea
Carlson, C. A., Ducklow, H. W., & Sleeter, T. D. (1996) · Deep Sea Research Part II Topical Studies in Oceanography · doi:10.1016/0967-0645(95)00101-8 · Cited by 148 · see citing works
Self-citationFuhrman, J. A., & Ouverney, C. (1998) · Aquatic Ecology · doi:10.1023/a:1009974817127 · Cited by 78 · see citing works
Frischer, M. E., Floriani, P. J., & Nierzwicki‐Bauer, S. A. (1996) · Canadian Journal of Microbiology · doi:10.1139/m96-136 · Cited by 55 · see citing works
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Jones, R. T., Robeson, M. S., Lauber, C. L., Hamady, M., Knight, R., & Fierer, N. (2009) · The ISME Journal · doi:10.1038/ismej.2008.127 · Cited by 1,230 · see citing works
Scaling laws predict global microbial diversity
Locey, K. J., & Lennon, J. T. (2016) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1521291113 · Cited by 1,184 · see citing works
López‐García, P., Duperron, S., Philippot, P., Foriel, J., Susini, J., & Moreira, D. (2003) · Environmental Microbiology · doi:10.1046/j.1462-2920.2003.00495.x · Cited by 221 · see citing works
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Gómez-Pereira, P. R., Fuchs, B. M., Alonso, C., Oliver, M. J., van Beusekom, J. E. E., & Amann, R. (2010) · The ISME Journal · doi:10.1038/ismej.2009.142 · Cited by 165 · see citing works
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Cho, J., Stapels, M. D., Morris, R. M., Vergin, K. L., Schwalbach, M. S., Givan, S. A., Barofsky, D. F., & Giovannoni, S. J. (2007) · Environmental Microbiology · doi:10.1111/j.1462-2920.2007.01264.x · Cited by 72 · see citing works
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Serganov, A., & Patel, D. J. (2009) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2009.07.002 · Cited by 69 · see citing works
Yamagishi, T., Fujimoto, N., Nishi, H., Miyamoto, Y., Hara, N., Asano, M., Fuchimoto, Y., Wada, S., Kitamura, K., Ozaki, S., et al. (2015) · Lung Cancer · doi:10.1016/j.lungcan.2015.07.014 · Cited by 61 · see citing works
Dailey, H. A., & Gerdes, S. (2015) · Archives of Biochemistry and Biophysics · doi:10.1016/j.abb.2015.02.017 · Cited by 49 · see citing works
Giraud, C., Callac, N., Beauvais, M., Mailliez, J.-R., Ansquer, D., Selmaoui-Folcher, N., Pham, D., Wabete, N., & Boulo, V. (2021) · PeerJ · doi:10.7717/peerj.12241 · Cited by 23 · see citing works
Kobiyama, A., Rashid, J., Reza, M. S., Ikeda, Y., Yamada, Y., Kudo, T., Mizusawa, N., Yanagisawa, S., Ikeda, D., Sato, S., et al. (2021) · Scientific Reports · doi:10.1038/s41598-021-96641-9 · Cited by 11 · see citing works
- Authors
- Morris, R. M., Rappé, M. S., Connon, S. A., Vergin, K. L., Siebold, W. A., Carlson, C. A., & Giovannoni, S. J.
- Affiliations
- Oregon State University (US)
- University of California, Santa Barbara (US)
- Corresponding author
- Giovannoni, Stephen J.
- Venue
- Nature
- Published
- 2002-12
- Volume
- 420
- Issue
- 6917
- Pages
- 806-810
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- OpenAlex
- W2001447987
- Cited by
- 1,129
- References
- 28
- Citations by year
- 2026: 20 · 2025: 33 · 2024: 40 · 2023: 55 · 2022: 57 · 2021: 63 · 2020: 48 · 2019: 58 · 2018: 39 · 2017: 50 · 2016: 68 · 2015: 62 · 2014: 55 · 2013: 66 · 2012: 68
- FWCI
- 22.48
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature (publishedVersion)
- PubMed (publishedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- Funders
- National Science Foundation
- M.J. Murdock Charitable Trust
- Oregon State University
- Japan Society for the Promotion of Science
- Topics
- Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
- Physical Sciences › Earth and Planetary Sciences › Oceanography › Marine and coastal ecosystems
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protist diversity and phylogeny
- Keywords
- SAR11 clade, Alphaproteobacteria, bacterioplankton, marine bacteria, bacterial abundance, Sargasso Sea, mesopelagic zone, euphotic zone, microbial community composition, ribosomal DNA, gene cloning
- MeSH terms
- Atlantic Ocean, Pacific Ocean, RNA, Bacterial, RNA, Ribosomal, 16S, Seawater, Colony Count, Microbial, In Situ Hybridization, In Situ Hybridization, Fluorescence, Biomass, Alphaproteobacteria
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