The DOI matches its Crossref record; 42 of the 42 references it cites were found in a registry or an index.
The reconstruction of 2,631 draft metagenome-assembled genomes from the global oceans
Open accessAbstract
Microorganisms play a crucial role in mediating global biogeochemical cycles in the marine environment. By reconstructing the genomes of environmental organisms through metagenomics, researchers are able to study the metabolic potential of Bacteria and Archaea that are resistant to isolation in the laboratory. Utilizing the large metagenomic dataset generated from 234 samples collected during the Tara Oceans circumnavigation expedition, we were able to assemble 102 billion paired-end reads into 562 million contigs, which in turn were co-assembled and consolidated in to 7.2 million contigs ≥2 kb in length. Approximately 1 million of these contigs were binned to reconstruct draft genomes. In total, 2,631 draft genomes with an estimated completion of ≥50% were generated (1,491 draft genomes >70% complete; 603 genomes >90% complete). A majority of the draft genomes were manually assigned phylogeny based on sets of concatenated phylogenetic marker genes and/or 16S rRNA gene sequences. The draft genomes are now publically available for the research community at-large.
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Cited by
Blanco-Míguez, A., Beghini, F., Cumbo, F., McIver, L. J., Thompson, K. N., Zolfo, M., Manghi, P., Dubois, L., Huang, K. D., Thomas, A. M., et al. (2023) · Nature Biotechnology · doi:10.1038/s41587-023-01688-w · Cited by 1,442
Chen, I.-M. A., Chu, K., Palaniappan, K., Pillay, M., Ratner, A., Huang, J., Huntemann, M., Varghese, N., White, J. R., Seshadri, R., et al. (2019) · Nucleic Acids Research · doi:10.1093/nar/gky901 · Cited by 835
New insights from uncultivated genomes of the global human gut microbiome
Nayfach, S., Shi, Z. J., Seshadri, R., Pollard, K. S., & Kyrpides, N. C. (2019) · Nature · doi:10.1038/s41586-019-1058-x · Cited by 737
Tara Oceans: towards global ocean ecosystems biology
Sunagawa, S., Acinas, S. G., Bork, P., Bowler, C., Coordinators, T. O., Acinas, S. G., Babin, M., Bork, P., Boss, E., Bowler, C., et al. (2020) · Nature Reviews Microbiology · doi:10.1038/s41579-020-0364-5 · Cited by 490
Biosynthetic capacity, metabolic variety and unusual biology in the CPR and DPANN radiations
Castelle, C. J., Brown, C. T., Anantharaman, K., Probst, A. J., Huang, R. H., & Banfield, J. F. (2018) · Nature Reviews Microbiology · doi:10.1038/s41579-018-0076-2 · Cited by 454
Metadata
- Authors
- Tully, B. J., Graham, E. D., & Heidelberg, J. F.
- Venue
- Scientific Data
- Published
- 2018-01-16
- Volume
- 5
- Issue
- 1
- Pages
- 170203-170203
- ISSN
- 2052-4463 (ISSN-L)
- OpenAlex
- W2735611463
- Cited by
- 508
- References
- 42
- Type
- data paper
- Language
- en
- Open access
- gold
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- Tully, B. J., Graham, E. D., & Heidelberg, J. F. (2018). The reconstruction of 2,631 draft metagenome-assembled genomes from the global oceans. Scientific Data. https://doi.org/10.1038/sdata.2017.203
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